BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336188
Length=2544
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30810.1 | Symbols: | Transcription factor jumonji (jmj) fa... 2822 0.0
AT2G34880.1 | Symbols: MEE27, PKDM7C | Transcription factor jum... 898 0.0
> AT1G30810.1 | Symbols: | Transcription factor jumonji (jmj)
family protein / zinc finger (C5HC2 type) family protein | chr1:10936765-10942292
REVERSE LENGTH=4156
Length=4156
Score = 2822 bits (1528), Expect = 0.0
Identities = 1739/1842 (94%), Gaps = 10/1842 (1%)
Strand=Plus/Plus
Query 23 CTCCATTAGAATCTGAGATCAAAGAGGATATGTCTTTGAAGAATCATCCTCCAGACAAGG 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 CTCCATTAGAATCTGAGATCAAAGAGGATATGTCTTTGAAGAATCATCCTCCAGACAAGG 392
Query 83 ATAAGGACAAGGACACTATTATGGAACAACCTAGTAGTCCACGTCATCGGAAGGTTGTTG 142
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 393 ATAAGGACAAAGACACTATCATGGAACAACCTAGTAGTCCACGTCATCGGAAGGTTGTTG 452
Query 143 CTAGATGGTTA-CTGGATGAAGCGCAGAGGCCGATTATCGATGAAGCTCCGGTATTCACC 201
||||||||||| || |||||||| |||||||| |||||| |||| ||||| ||||||||
Sbjct 453 CTAGATGGTTACCT-GATGAAGCACAGAGGCCAATTATCAATGACGCTCCCGTATTCACT 511
Query 202 CCATCATTAGAGGAGTTTGAAGATACACTTGCTTATATCGAAAAGATACGTCCACTAGCA 261
|||||| |||||||||||| |||| ||||||| |||||||| ||||||||||||||||||
Sbjct 512 CCATCACTAGAGGAGTTTGTAGATCCACTTGCGTATATCGAGAAGATACGTCCACTAGCA 571
Query 262 GAGCCGTTTGGTATCTGTCGAATCATCCCACCATCGACATGGAAACCTCCTTGCCGGCTT 321
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 572 GAGCCGTATGGTATCTGTCGAATCATCCCACCATCGACATGGAAGCCTCCTTGCCGGCTT 631
Query 322 AAGGAGAAGAATATATGGGAGCAAACAAAGTTTCCCACCCGGATTCAGAA-CGTCGACCT 380
|||||||||| |||||||||||| ||||||||||| || |||||||| || ||| |||||
Sbjct 632 AAGGAGAAGAGTATATGGGAGCAGACAAAGTTTCCTACTCGGATTCA-AACCGTAGACCT 690
Query 381 GCTTCAGAACCGCGAGCCGATGACA-AAGAAACCAAAGAGTAGAAAACGGAAAAGGAGAA 439
|||||||||||| |||||||||| | |||||||| ||||||||||| |||||| ||||||
Sbjct 691 GCTTCAGAACCGTGAGCCGATGA-AGAAGAAACCGAAGAGTAGAAAGCGGAAACGGAGAA 749
Query 440 GAAACTCGAGAATGAGTTCGTCTAAGAGACGATCTGGTTCTTCTCCCTCTGAATCGACTT 499
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 750 GAAACTCGAGAATGGGTTCGTCTAAGAGACGATCTGGTTCTTCTCCCGCTGAATCGACTT 809
Query 500 CATCTCCCGAGGCTGAGGAGAAATTTGGTTTCAATTCTGGTTCAGACTTCACTCTTGATG 559
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 810 CATCACCCGAGGCTGAGGAGAAGTTTGGTTTCAATTCTGGTTCAGACTTCACTCTTGATG 869
Query 560 AGTTTGAGAAATATGCTCTGCATTTTAAAGACTCTTACTTCGAAAAGAAAGACTCTGGTG 619
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 870 AGTTTGAGAAATATGCTCTGCATTTTAAAGACTCGTACTTTGAAAAGAAAGACTCTGGTG 929
Query 620 GAGATGTAGTAAAATGGACACCGTCTGTGGATGAAATAGAAGGCGAATACTGGCGGATAG 679
||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 930 GAGATATAGTAAAATGGACACCGTCTGTGGATGATATAGAAGGGGAATACTGGCGGATAG 989
Query 680 TTGAGCAACCAACAGATGAAGTGGAGGTATACTATGGAGCTGACTTGGAGAATGGGGTAC 739
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 990 TTGAGCAACCAACAGATGAAGTGGAGGTTTACTATGGAGCTGACTTGGAGAATGGGGTGC 1049
Query 740 TTGGAAGCGGGTTTTATAAAAGAGCGGAAAAGTTAACCGGTAGCGATATGGATCAGTACA 799
||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||
Sbjct 1050 TTGGAAGCGGGTTTTATAAAAGAGCCGAGAAGTTTACCGGTAGCGATATGGAGCAGTACA 1109
Query 800 CAGTATCTGGCTGGAACTTGAATAACCTGCCGCGTCTCCCCGGCTCTGTCCTCTCTTTTG 859
|| ||||||||||||||||||||||| | || || || || |||||||| ||||||||||
Sbjct 1110 CATTATCTGGCTGGAACTTGAATAACTTACCACGGCTTCCTGGCTCTGTACTCTCTTTTG 1169
Query 860 AAGATTGTGATATCTCTGGAGTTCTAGTTCCTTGGCTCTATGTAGGAATGTGCTTTTCAT 919
|||||||||| || || |||||||||||||| ||||| ||||| |||||||| |||||||
Sbjct 1170 AAGATTGTGACATATCCGGAGTTCTAGTTCCATGGCTATATGTGGGAATGTGTTTTTCAT 1229
Query 920 CATTTTGTTGGCATGTGGAGGACCATCATTTATATTCACTGAACTATCATCACTTTGGGG 979
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1230 CATTTTGTTGGCATGTGGAGGACCATCATTTATATTCACTTAACTATCATCACTTTGGGG 1289
Query 980 AGCCAAAAGTATGGTATGGTGTTCCAGGAAGCAATGCAACCGCTCTTGAGAAGGCGATGA 1039
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1290 AGCCAAAAGTATGGTATGGTGTTCCAGGAAGCAATGCAACCGCTCTCGAGAAGGCGATGA 1349
Query 1040 GAAAACATCTGCCTGACCTGTTTGAAGAACAGCCTGATTTACTTCATGGCCTGGTTACTC 1099
| |||||| | |||||| |||| ||||||||||||||| |||| ||||||||||||||||
Sbjct 1350 GGAAACATTTACCTGACTTGTTCGAAGAACAGCCTGATCTACTACATGGCCTGGTTACTC 1409
Query 1100 AGTTTTCTCCTTCAATCCTGAAAGATGAGGGAGTCCAGGCTTACCGGGTGGTTCAGAATT 1159
|||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 1410 AGTTTTCTCCTTCAATACTGAAAGATGAGGGAGTCCAGGCTTACCGGGTCGTGCAGAATT 1469
Query 1160 CAGGGGAGTATGTATTGACATTCCCGAGGGCGTATCATGCTGGATTCAACTGCGGTTTCA 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 CAGGGGAGTATGTATTGACATTCCCGAGGGCGTATCATGCTGGATTCAACTGCGGTTTCA 1529
Query 1220 ACTGCGCAGAAGCGGTTAATGTGGCTCCTGTTGATTGGTTGACTCATGGACAGAACGCTG 1279
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1530 ACTGCGCAGAAGCGGTTAATGTGGCTCCGGTTGATTGGTTGGCTCATGGACAGAACGCTG 1589
Query 1280 TGGAACTTTACAGTAAAGAGACAAGGAAGACTTCTCTGTCTCACGACAAACTTCTTCTTG 1339
||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1590 TGGAACTATATAGTAAAGAGACAAGGAAGACTTCTCTGTCTCACGACAAGCTTCTTCTTG 1649
Query 1340 GAGCAGCTTATGAAGCTGTTAAGTCCCTTTGGGAACTCTCAGCTTCTGTGGGAAAGGAAA 1399
|||||||||||||||| || ||| | |||||||||||||||||||||| |||||||||||
Sbjct 1650 GAGCAGCTTATGAAGCGGTGAAGGCTCTTTGGGAACTCTCAGCTTCTGAGGGAAAGGAAA 1709
Query 1400 ATACAACAAATTTGAGATGGAAAAGTTTCTGTGGGAAGAACGGGACACTTACCAACGCGA 1459
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1710 ATACAACAAATTTGAGATGGAAGAGTTTCTGTGGGAAGAACGGGACACTTACCAACGCGA 1769
Query 1460 TCCAGGCTCGGTTACAAATGGAAGAGGGAAGAATTGCAGCTCTTGGTAGGGATTCTTCAA 1519
| || ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1770 TACAAGCTCGGTTACAAATGGAAGAGGGGAGAATTACAGCTCTTGGTAGGGATTCTTCAA 1829
Query 1520 TCCT-AATGAAGATGGAGAAGGAGTTTGATTCAAACTGTGAAAGGGAATGCTTCTCATGC 1578
| | || ||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1830 GCTTGAA-GAAGATGGAGAAGGACTTTGATTCAAACTGTGAAAGGGAATGTTTCTCATGC 1888
Query 1579 TTTTATGATTTGCATCTCTCGGCTTCTGGCTGCAAGTGCTCTCCTGACGAATACGCGTGC 1638
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1889 TTTTATGATTTGCATCTCTCGGCTTCTGGCTGCAAGTGCTCTCCCGAAGAATACGCGTGC 1948
Query 1639 CTTAAGCATGCAGATGATCTTTGTTCATGTGATGAGAAAGATGGATTTATT-TGTCTCCG 1697
||||| |||||||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 1949 CTTAAACATGCAGATGATCTTTGTTCATGTGATGTGAAAGATGGATTTATTCT-TCTCCG 2007
Query 1698 GTACACAATGGATGAGTTAAGCTCGTTGGTCAGAGCATTGGAAGGGGAATCAGATGATTT 1757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2008 GTACACAATGGATGAGTTAAGCTCGTTGGTCAGAGCATTGGAAGGGGAATCAGATGATTT 2067
Query 1758 AAAGATATGGGCTTCCCAGGTCTTAGGCATTGAACACAGTGATGAAGATCAGACAAAGAC 1817
|||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||
Sbjct 2068 AAAGATATGGGCTTCCAAGGTTTTAGGCATTGAACATAGTGATGAAGATCAGACAAAGAC 2127
Query 1818 TAGTTCAGTTATCAGTGAGGAGAAGAAGTTAAAAGAAGGTTC 1859
||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2128 TAGTTCAGTTATCAGTGAGGAGAAGAAGTTAAAGGAAGGTTC 2169
Score = 1085 bits (587), Expect = 0.0
Identities = 631/653 (97%), Gaps = 0/653 (0%)
Strand=Plus/Plus
Query 1892 GTTCAGTTATCAGTGAGGAGAAGAAGTTAAAGGAAGGTTCTTTTGATCTGAACATTGACT 1951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2130 GTTCAGTTATCAGTGAGGAGAAGAAGTTAAAGGAAGGTTCTTTTGATCTGAACATTGACT 2189
Query 1952 TAGAGTTGGATTATCAAGAAGGCCTTAAAGAAGAAGTCAGCACTAGTGGCGGCGAGTTAA 2011
||||| ||||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 2190 TAGAGATGGATTATCAAGAAGACGTTAAAGAAGAAGCCAGCACTAGTGGCGGCGAGTTAA 2249
Query 2012 CCGCCTCAGAGAACCTTGGTGTATCGGTTGAGCCTATAAACCTCGGGTTCTTGATTTTTG 2071
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2250 CCGCCTCAGAGAACCTTGGTGTATCGGTCGAGCCTATAAACCTCGGGTTCTTGATTTTTG 2309
Query 2072 GAAAGCTTTGGTGCAATAAGCATGCTATATTCCCAAAAGGATTCAGGAGTCGTGTCAAGT 2131
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2310 GAAAGCTTTGGTGCAATAAGTATGCTATATTCCCAAAAGGATTCAGGAGTCGTGTCAAGT 2369
Query 2132 TCTACAATGTGCTTGATCCAACAAGAATGAGCAATTACATCTCCGAGGTTTTGGATGCAG 2191
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2370 TCTACAATGTTCTTGATCCAACAAGAATGAGCAATTACATCTCTGAGGTTTTGGATGCAG 2429
Query 2192 GACTCATGGGTCCATTGTTCAGGGTCACTCTGGAAGAATCTCCAGACGAGAGCTTCTTCA 2251
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2430 GACTCATGGGTCCATTGTTCAGGGTTACTCTGGAAGAATCTCCAGACGAGAGCTTCTTCA 2489
Query 2252 ATGTCTCAGCCCAACAATGCTGGGAAATGGTGTTGCAGAGAGTTAAAGATACATCCACAA 2311
||||||| || ||||||||||||||||||||| ||| |||||||||||||||||| ||||
Sbjct 2490 ATGTCTCTGCACAACAATGCTGGGAAATGGTGATGCGGAGAGTTAAAGATACATCAACAA 2549
Query 2312 GTCTTGGTCTTCCTACATTATCGCAGTTTGAGGGTATCAACGGTCTTCAAATGTTTGGTT 2371
||||||||||||||| ||| | ||||||||| |||||||||| ||||||||||||||||
Sbjct 2550 GTCTTGGTCTTCCTATTTTACCACAGTTTGAGAGTATCAACGGGCTTCAAATGTTTGGTT 2609
Query 2372 TCCTCTCGCCGTCTATAGTTCAGGCCATTGAAGCTCTTGACCCAAACCATCGACTAGTTG 2431
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2610 TCCTCTCACCCTCTATAGTTCAGGCCATTGAAGCTCTTGACCCAAACCATCGACTAGTTG 2669
Query 2432 AGTACTGGAACCACAAGAACCAAACTTCATCAGACTCAAAAGATCACTTCATATCATCAA 2491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2670 AGTACTGGAACCACAAGAACCAAACTTCATCAGACTCAAAAGATCACTTCATATCATCAA 2729
Query 2492 ACTGTTCCGCAAGTTTAACCAAAGGAAAACTTTTCGGAGTAGATTTGATGTAA 2544
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2730 ACTGTTCCGCAAGTTTAACCAAAGGAAAACTTTTCGGAGTAGATTTGATGTAA 2782
> AT2G34880.1 | Symbols: MEE27, PKDM7C | Transcription factor jumonji
(jmj) family protein / zinc finger (C5HC2 type) family
protein | chr2:14711880-14716634 REVERSE LENGTH=2421
Length=2421
Score = 898 bits (486), Expect = 0.0
Identities = 1344/1737 (77%), Gaps = 143/1737 (8%)
Strand=Plus/Plus
Query 85 AAGGACAAGGACACTATTATGGAACAACCTAGTAGTCCACGTCATCGGAAGGTTGTTGCT 144
||| |||||| ||||| | | |||| ||||||||||| ||||| ||||||| |||||
Sbjct 79 AAGAACAAGGGCACTAATGTAGAACCTCCTAGTAGTCCGTATCATCCGAAGGTTCTTGCT 138
Query 145 AGAT-GGTTACTGGATGAA-GCGCAGAGGCC-GATTATCGATGAAGCTCCGGTATT-CAC 200
|||| || | | || | || | ||||||| || || | ||||||||| ||||| |||
Sbjct 139 AGATGGGAT-CCGGCT-AATGAAAAGAGGCCAGA-CATTGGTGAAGCTCCAGTATTCCAC 195
Query 201 CCCATCATTAGAGGAGTTTGAAGATACACTTGCTTATATCGAAAAGATACGTCCAC-TAG 259
|| | ||| |||||||||||||||||| |||||||| || ||||| |||||||| | |||
Sbjct 196 CCTA-CATCAGAGGAGTTTGAAGATACGCTTGCTTACATAGAAAAAATACGTCC-CTTAG 253
Query 260 CAGAGCCGTTTGGTATCTGTCGAATCATCCCACCATCGACA-TGGAAACCTCCTTGCCGG 318
| || | |||||||| ||||||||| | ||||| |||| | ||| ||||||||||||
Sbjct 254 CTGAATCATTTGGTATTTGTCGAATCGTGCCACCGTCGA-ATTGGTCTCCTCCTTGCCGG 312
Query 319 CTT-AAGGAGAAGAATATATGGGAGCAA-ACAAAGTTTCCC-ACCCG-GATTCAGAACGT 374
||| |||| | | | ||||||| || || | ||| |||||| ||||| | ||||| ||
Sbjct 313 CTTAAAGG-GGATAGTATATGGAAG-AATA-AAAATTTCCCAACCCGTG-TTCAGTTTGT 368
Query 375 CGACCTGCTTCAGAACCG-CGAGCC--GATGACA-AAGAAACC-AAAGAGTAGAAAACGG 429
||||||||||||||| | || || || || | |||| ||| |||| | || ||||||
Sbjct 369 TGACCTGCTTCAGAACAGAGGACCCGTGAAGA-AGAAGACACCTAAAG-GAAGGAAACGG 426
Query 430 AAAAGGA-GAAGAA-ACTCGAGAATGAGTTCG--TCTAAGAGACGATCTGGTTCTTCTCC 485
||| || ||| || |||| |||| | ||| | |||| |||| ||| | |||
Sbjct 427 -AAACGAGGAA-AATACTCAAGAA-CCG-TCGCCCCCAAGAAACGAAATGG--C-TCTGT 479
Query 486 CTCTGAATCGA-CTTCAT-CTCCCGA-G-G-CTG-AG--GAGAAATTTGGTTTC-AATTC 536
||| |||| | ||| | | ||| | | | | | || ||||| ||||||||| || ||
Sbjct 480 TTCTAAATC-AGTTTC-TACCCCCAAGGCGACCGAAGAAGAGAATTTTGGTTTCGAA-TC 536
Query 537 TGGTTCAGACTTCACTCTTGATG-AGTTTGAGAAATATGCTC-TGCATTTTAAAGACTCT 594
|||| |||| || |||||||| | ||||||||||||| |||| | |||| ||||||||
Sbjct 537 TGGTCCAGAATTTACTCTTGA-GAAGTTTGAGAAATACGCTCAAG-ATTTCAAAGACTCC 594
Query 595 TACTTCGAAAAG-AAAGACTCTGGTGGAGATGTAGTAAAATGGACA-CCGTCTGTGGATG 652
||||| | |||| ||||| | | | | || |||| | || ||||| || |
Sbjct 595 TACTTTG-AAAGAAAAGA--C------A-A--T-GT----TGGAGATCCATCTGTTGAGG 637
Query 653 AAATAGAAGGCGAATACTGGCGGAT-AGTTGAGCAACCAACAGATGAAGTGGAGGTATAC 711
| || ||||| || |||||| | || | ||||| || |||| ||||||| ||||||
Sbjct 638 AGATCGAAGGAGAGTACTGGAGAATCA-TTGAGAAAGAAACAAATGAAGTTAAGGTATTG 696
Query 712 TAT-GGAGCTGACTTGGAGAATGGGGTACTTGGAAGCGGGTTTTAT-AAAAGAGCGG-AA 768
||| ||| | || ||||||||| ||||||||||| || ||| | |||| | || ||
Sbjct 697 TATGGGA-CGGATTTGGAGAATCCCATACTTGGAAGC-GG-TTTCTCCAAAG-G-GGTAA 751
Query 769 AAGTT--AACC-G--GTAGCGATATGGATCAGTACACAGT-ATCTGGCTGGAACTTGAAT 822
|| || |||| | | | ||||||||| | |||| | | ||||| ||||| |||||
Sbjct 752 AAATTCCAACCAGAAGAAATGATATGGATAAATACATA-TCTTCTGGTTGGAATTTGAAC 810
Query 823 AACCT-GCCGCGTCTCCCCGGCTCTGTCCTCTCTTTTGAAGATTGTGATATCTCTGGAGT 881
||||| ||| ||||| | || ||| | || || ||||| |||||||| ||||| || ||
Sbjct 811 AACCTCGCC-CGTCTGCAGGGATCTCTACTATCCTTTGAGGATTGTGAGATCTCAGGGGT 869
Query 882 TCTA-GTTCCTTGGCTCTATGTAGGAATGTGCTTTTCATCATTTTGTTGGCATGTGGAGG 940
|| | || || ||||||||||| || |||||||||||| | |||||||||||||| ||||
Sbjct 870 TC-AGGTGCCATGGCTCTATGTGGGCATGTGCTTTTCAACGTTTTGTTGGCATGTTGAGG 928
Query 941 ACCATCATTTATATTCACTGAACTATCATCACTTTGGGGAGCCAAAAGTATGGTATGGTG 1000
|| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 929 ACAATCATCTATATTCACTGAACTATCATCACTTTGGCGAGCCAAAAGTATGGTACGGAG 988
Query 1001 TTCCAGGAAGCAATGCAACCGCTCTTGAGAAGGCGATGAGAAAACATCTGCCTGACCTGT 1060
|||| |||||| ||||||| | || |||||||| |||||||||||||| || || |||
Sbjct 989 TTCCGGGAAGCCATGCAACTGGGCTAGAGAAGGCAATGAGAAAACATCTACCAGATTTGT 1048
Query 1061 TTGAAGAACAGCCTGATTTACTTCATGGCCTGGTTACTCAGTTTTCTCCTTCAATCCTGA 1120
| || ||||| |||||| ||||||||| |||||||||||||||||||| | || |||
Sbjct 1049 TCGATGAACAACCTGATCTACTTCATGAACTGGTTACTCAGTTTTCTCCAACGATTTTGA 1108
Query 1121 AAGATGAGGGAGTCCAGGCTTACCGGG-TGGTTCAGAATTCAGGGGAGTATGTAT-TGAC 1178
|| |||||||||||| || ||| || | || |||||||| ||||||||||||| | | ||
Sbjct 1109 AAAATGAGGGAGTCCCGGTTTATCGAGCTG-TTCAGAATGCAGGGGAGTATGT-TCTAAC 1166
Query 1179 ATTCCCGAGGGCGTATCATGCTGGATTCAACTGCGGTTTCAACTGCGCAGAAGCGGTTAA 1238
|||||| || || |||||| | || ||||||||||| |||||||| ||||||||||| ||
Sbjct 1167 ATTCCCTAGAGCATATCATTCGGGTTTCAACTGCGGATTCAACTGTGCAGAAGCGGTGAA 1226
Query 1239 TGTGGCTCCTGTTGATTGGTTGACTCATGGACAGAACGCTGTGGAACTTTACAGTAAAGA 1298
||||||||| ||||||||| || ||||||||||||| ||||||||| | || || ||||
Sbjct 1227 TGTGGCTCCGGTTGATTGGCTGGCTCATGGACAGAATGCTGTGGAAATATATAGCCAAGA 1286
Query 1299 GACAAGGAAGACTTCTCTGTCTCACGACAAACTTCTTCTTGGAGCAGCTTATGAAGCTGT 1358
||| |||| || ||||| ||||| |||||| |||| ||||||||||||| |||||||||
Sbjct 1287 GACTCGGAAAACGTCTCTATCTCATGACAAAATTCTCCTTGGAGCAGCTTTTGAAGCTGT 1346
Query 1359 TAAGTCCCTTTGGGAACTCTCAGCTTC-TGTGGGAAAGGAAAATACAACAAAT-TTGAGA 1416
||||||||| ||| ||| | || ||||| | | ||||||| ||| || ||
Sbjct 1347 TAAGTCCCT-------CTC--AGCA-CATG-GGGAA-G-ATAATACAA-AAAGGTTCAGC 1392
Query 1417 TGGAAAAGTTTCTGTGGGAAGAACGGGA-CACTTACCAACGCGATCCAGGCTCGGTTACA 1475
||||| || |||||||||||| |||| | || | || || || ||| |||| |||||||
Sbjct 1393 TGGAAGAGATTCTGTGGGAAGGACGGTATCA-TAACTAAGGCCATCGAGGCACGGTTACG 1451
Query 1476 AATGGAAGAGGGAAGAATTGCAG-CTCTTGGTAG-GGATTCTTCAATCCTAATGAAGATG 1533
|||||||| |||||||| || ||||||| | || || | || | | | ||||||
Sbjct 1452 GATGGAAGAAAAAAGAATTG-AGGCTCTTGGAAATGG-TT-T-CAG-CTTGGTAAAGATG 1506
Query 1534 GAGAAGGAGTTTGATTCAAACTGTGAAAGGGAATGCTTCTCATGCTTTTA-TGATTTGCA 1592
|| || || ||||||||||||||||||||||||||| |||| |||||| | ||| |||||
Sbjct 1507 GATAAAGACTTTGATTCAAACTGTGAAAGGGAATGCATCTCTTGCTTT-AGTGACTTGCA 1565
Query 1593 TCTCTCGGCTTCTGGCTGCAAG--T-GCTC-TC-CT-GACGAATACGCGT-GC-CTTAAG 1644
|||||| ||| ||||||||||| | |||| || || || ||||| | || || | ||
Sbjct 1566 TCTCTCTGCTACTGGCTGCAAGAATTGCTCATCTCTCGAAGAATATG-GTTGCACGAAA- 1623
Query 1645 CATGCAGATGATCTTTGTTCATGTGATGAGAAAGATGGATTT-ATTTGTCTCCGGTACAC 1703
|| | ||| || || |||||||||| | |||||| | ||| |||| ||| || |||||
Sbjct 1624 CA--C-GAT-AT-TT-GTTCATGTGAAGGGAAAGACCG-TTTCATTTTTCTTCGTTACAC 1676
Query 1704 AATGGATGAGTTAAGCTCGTTGGTCAGAGCATTGGAAGGGGAATCAGATGATTTAAA 1760
|| |||||||||||||| ||||| |||||||||||||| |||||||||||| ||||
Sbjct 1677 CATAGATGAGTTAAGCTCATTGGTAAGAGCATTGGAAGGTGAATCAGATGATCTAAA 1733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126270195531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5