BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg336202

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G30925.1 | Symbols:  | phospholipase Cs | chr1:11009888-1101...   159    1e-38
  AT5G42430.1 | Symbols:  | F-box and associated interaction doma...   141    5e-33
  AT1G30920.1 | Symbols:  | F-box family protein | chr1:11004242-...  69.4    2e-11


> AT1G30925.1 | Symbols:  | phospholipase Cs | chr1:11009888-11011792 
REVERSE LENGTH=1125
Length=1125

 Score =  159 bits (86),  Expect = 1e-38
 Identities = 228/294 (78%), Gaps = 20/294 (7%)
 Strand=Plus/Plus

Query  1     ATGTCGGTTCTAGAGGATGTCGAGAAATTGGAATGGTCGAAATATGTCTACAC-TT--TG  57
             ||| |||||||||||||| | ||||||  ||||||||||| |||||||||||| ||  ||
Sbjct  826   ATGACGGTTCTAGAGGATTTTGAGAAACAGGAATGGTCGACATATGTCTACACTTTGATG  885

Query  58    CCTCACAATGACATTGGTGTCTACAATGTTTTTGTCGTTGGTATGACGGCTAGAGGTGAA  117
              || | ||| | | | || |  |  ||||||  || ||||| ||||| |||| |||||| 
Sbjct  886   GCTGAGAAT-ATAGTCGT-T-AAGTATGTTTCCGTGGTTGGGATGACTGCTACAGGTGAT  942

Query  118   ATTGTTTTGGCGGAGAA-GTATACAT-CAAAACCATTTTATGTTTTGTACTTCAAT-CCG  174
             ||||||||||  || ||   || ||| | ||||| |||||||| || ||||| ||| |||
Sbjct  943   ATTGTTTTGG-TGAAAACAAATGCATGC-AAACCGTTTTATGTGTTCTACTTTAATCCCG  1000

Query  175   GAAAAGAACACTATCCAAAGTGTTGAAATCCAAGGTGTTGGAGCTA-ACGGTGAAGCGTT  233
             | || ||||||| ||| ||||||||||||||||||||||||||  | ||    ||  |  
Sbjct  1001  G-AAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTGTTGGAG-AAGAC-CACAAATGCC  1057

Query  234   TGAGACTGATT-GTAGAGTTTACGCCTTTGTAGACCATGTAGAGGATCTT-AGT  285
             | | |||  ||  || ||||| |||||||||||||||||||||||||||| |||
Sbjct  1058  TCA-ACT--TTCATACAGTTTGCGCCTTTGTAGACCATGTAGAGGATCTTCAGT  1108


> AT5G42430.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr5:16971312-16972499 REVERSE LENGTH=1188
Length=1188

 Score =  141 bits (76),  Expect = 5e-33
 Identities = 229/299 (77%), Gaps = 25/299 (8%)
 Strand=Plus/Plus

Query  1     ATGTCGGTTCTAGAGGATGTCGAGAAATTGGAATGGTCGAA-ATATGTCTACACTTT---  56
             |||| ||||||||||||||| ||||||  ||||||| | || || ||| ||||||||   
Sbjct  826   ATGTGGGTTCTAGAGGATGTGGAGAAACAGGAATGGAC-AACATCTGTGTACACTTTGAG  884

Query  57    GCCTCACAAT-GA--CATT--GGTGT-CTACAATGTTTTTGTCGTTGGTATGACGGCTAG  110
             |  | |  || ||  | ||  ||| | |||| || ||||| | ||||| || || |||| 
Sbjct  885   GGATGAGGATAGAGTCGTTAAGGTTTACTACGATCTTTTTATTGTTGGGATAACTGCTAC  944

Query  111   AGGTGAAATTGTTTTGGCGGAGAAGTATACATCAAAACCATTTTATGTTTTGTACTTCAA  170
             ||||||||||||||||||| ||||  |   ||  || || |||||||| || ||||| ||
Sbjct  945   AGGTGAAATTGTTTTGGCGAAGAAAAAGGTATGTAAGCCGTTTTATGTCTTCTACTTTAA  1004

Query  171   TC-CGGAAAAGAACACTATCCAAAGTGTTGAAATCCAAGGTGTTGGAGCTAACGGTGAAG  229
             || | |||| ||||||| ||| ||||||||||||||||||| ||||||  ||   |  | 
Sbjct  1005  TCTC-GAAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTTTTGGAG--AA---T--A-  1055

Query  230   CGTTTGAGACTGATTGTAGAGTTTACGCCTTTGTAGACCATGTAGAGGATCTTAGTGTT  288
             |     || ||| |||||| ||| |||||||||||||||||||||||||||||| ||||
Sbjct  1056  C--CAAAG-CTG-TTGTAGTGTTCACGCCTTTGTAGACCATGTAGAGGATCTTAATGTT  1110


> AT1G30920.1 | Symbols:  | F-box family protein | chr1:11004242-11005444 
REVERSE LENGTH=1203
Length=1203

 Score = 69.4 bits (37),  Expect = 2e-11
 Identities = 164/223 (74%), Gaps = 18/223 (8%)
 Strand=Plus/Plus

Query  2     TGTCGGTTCTAGAGGATGTC-GAGAAATTGGAATGGTCGAAATATGTCTACACTTT---G  57
             ||| |||||||||||||||| || |||   |||||||||| |||||||||||||||   |
Sbjct  854   TGTGGGTTCTAGAGGATGTCGGA-AAAGAAGAATGGTCGACATATGTCTACACTTTGAGG  912

Query  58    CCTCACAAT---GAC-AT-TGG-TGTCTACAATGTTTTTGTCGTTGGTATGACGGCTAGA  111
               | | |||   | | ||  || |   || ||| | |  || |||||  |||| |||  |
Sbjct  913   GATGATAATAAAGTCGATCAGGTTAAATATAATCTCTCCGTTGTTGGGGTGACTGCTTCA  972

Query  112   GGTGAAATTGTTTTGGCGGAGAAG--T-ATACATC-AAAACCATTTTATGTTTTGTACTT  167
             |||||||||||||||| | |||||  | | ||| |  || |||||||||||||| |||||
Sbjct  973   GGTGAAATTGTTTTGGTGAAGAAGACTCAAACA-CTTAAGCCATTTTATGTTTTATACTT  1031

Query  168   CAATCCGGA-AAAGAACACTATCCAAAGTGTTGAAATCCAAGG  209
              || || || ||| || ||| ||  || ||||||| || ||||
Sbjct  1032  TAACCCCGACAAA-AATACTCTCTTAACTGTTGAAGTCAAAGG  1073



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18096389640


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5