BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336203
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 490 1e-137
AT1G30921.1 | Symbols: | pseudogene, hypothetical protein | ch... 459 3e-128
AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-1101... 289 4e-77
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 141 1e-32
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 490 bits (265), Expect = 1e-137
Identities = 540/665 (81%), Gaps = 49/665 (7%)
Strand=Plus/Plus
Query 313 GATGAATTCATTTATCATATTCTGACATTAGGAACTGAAAATGTGAGCTGGAGGGAGATC 372
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 304 GATGAATGGGTTTATCATATTCTGACATTAGGAACTGAAAATGTGAGGTGGAGGGAGATT 363
Query 373 ATATGTCCCTTAACTTATGGTTTTCGTTGGGAAAA---GATATGCATCAATGGGGTTTTG 429
||||||||||| | |||| | || | ||||||| ||||||||||||||||||||||
Sbjct 364 ATATGTCCCTTTTCATATGATCCTCCTCGGGAAAAGCCGATATGCATCAATGGGGTTTTG 423
Query 430 TATTACAT-AGCTTCTGACCCTGATGAAGAGGATGAAAAGATAGGTTGCTTTGATGTTAG 488
|||||||| || || | | | | | || | ||||||||||||||||||||
Sbjct 424 TATTACATAAG----TGTCGGT-A-G-TTATTATTCACTTATAGGTTGCTTTGATGTTAG 476
Query 489 GT-TGGAGAAATTCAAGTTTTTATATGTATCTCCCA-A-T-C-TGATAAA-----CTA-T 537
|| | ||||||||||||||||||||| || |||| | | | | ||| |||
Sbjct 477 GTCT-GAGAAATTCAAGTTTTTATATCTA-AGCCCAGATTGCTTTCCAAACTGGTCTAGA 534
Query 538 AAACTGATAAACTATAAGGGTAAATTAGGTTTGA-T-TAATTTAGACTATGCTTA-CGAT 594
||| |||||||||||||||||||||||||| ||| | ||| | || | | ||| | ||
Sbjct 535 AAATTGATAAACTATAAGGGTAAATTAGGTGTGACTATAA--TGGA--A-GATTATC-AT 588
Query 595 GGTGGATTTCCCCTTGAGTTACGTATGCGGGTTCTAGAGGATGTCGAGAAACAGGAATGG 654
||||||||||||||| |||| |||||| ||||||||||||||||||||||| ||||||||
Sbjct 589 GGTGGATTTCCCCTTAAGTTGCGTATGTGGGTTCTAGAGGATGTCGAGAAAGAGGAATGG 648
Query 655 ACTACATATGTCTACACTTTGATGG-CTGAGAATAAAGCCGTCATGGTTAACAACAATCT 713
|| | ||||| ||||||||||| || |||||||||||| || | || || || || |
Sbjct 649 ACGAGATATGCCTACACTTTGA-GGCCTGAGAATAAAGTCG--A-GGACAATGACTATGT 704
Query 714 TTCCGTTGTTGGGGCAACTGCTTCAGGTGAAATTGTTTTGGCGAAGGATAATGCATATAA 773
| |||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct 705 ATATGTTGTTGGGGCAACTGCTTCAGGTGAAATTGTTTTGACGAAACAGAATGCATATAA 764
Query 774 ACCTTTTTATGTTTTCTACTTTAACCCCGAAAGGAACACTCTCCGAAGTGTTGAGATTCA 833
||| ||||||||||||||||||| || |||||||||||||||| ||| ||||| || ||
Sbjct 765 ACCGTTTTATGTTTTCTACTTTAGTCCTGAAAGGAACACTCTCCTAAGCGTTGAAATCCA 824
Query 834 AGGTGTTAGAGAAGAGGAAGAATGGTTTGGCGATCATAGA-GTTTATTACTTTGTAGACC 892
||||||| | || || | ||||||||| |||||| | ||||| |||||||||||||
Sbjct 825 AGGTGTT-G-GA-GA--A-GAATGGTTTT---ATCATA-ATGTTTACTACTTTGTAGACC 874
Query 893 ATGTAGAGAATCTTAGATTTGATGTTATGAAGACTACATCTGCTGCAACATCTTTAGGCC 952
|||| ||| ||||||| ||||||||||||||||| |||| ||||| ||||||| | |||
Sbjct 875 ATGTCGAGGATCTTAGGTTTGATGTTATGAAGACAACATATGCTGGAACATCTAGAAGCC 934
Query 953 CACCA 957
|||||
Sbjct 935 CACCA 939
> AT1G30921.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11007112-11008238 REVERSE LENGTH=1127
Length=1127
Score = 459 bits (248), Expect = 3e-128
Identities = 359/411 (87%), Gaps = 13/411 (3%)
Strand=Plus/Plus
Query 512 ATGTATCTCCCAATCTGATAAACTATAAACTGATAAACTATAAGGGTAAATTAGGTTTGA 571
|||||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 723 ATGTATCTTCCAGTGTGATAAACTATAAATTGATAAACTATAAGGGTAAATTAGGTTTGG 782
Query 572 TTAATTTAGACTATGCTTACGATGGTGGATTTCCCCTTGAGTTACGTATGCGGGTTCTAG 631
|| |||| || | | ||| |||| ||||| || ||||| ||||||||||| ||||||||
Sbjct 783 TTGATTTGGAGAAGGATTATGATGCTGGATATCTCCTTGGGTTACGTATGCAGGTTCTAG 842
Query 632 AGGATGTCGAGAAACAGGAATGGACTACATATGTCTACACTTTGATGGC---TGAGAATA 688
|||||||||||||| ||||| || | ||||| ||||||| ||| ||| ||||||||
Sbjct 843 AGGATGTCGAGAAAGGGGAATAGAAGAAATATGCCTACACTGTGAGGGCTGATGAGAATA 902
Query 689 AAGCCGTCATGGTTAACAACAATCTTTCCGTTGTTGGGGCAACTGCTTCAGGTGAAATTG 748
|| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 AA---GTC-T--TTAACAACAATCTTTCCGTTGTTGGGGCAACTGCTTCAGGTGAAATTG 956
Query 749 TTTTGGCGAAGGATAATGCATATAAACCTTTTTATGTTTTCTACTTTAACCCCGAAAGGA 808
||||||||||| || ||||||| ||||| |||||||||||||| ||||| ||||| ||||
Sbjct 957 TTTTGGCGAAGAATTATGCATAGAAACCGTTTTATGTTTTCTAATTTAATCCCGATAGGA 1016
Query 809 ACACTCTCCGAAGTGTTGAGATTCAAGGTGTTAGAGAAGAGGAAGAATGGTTTGGCGATC 868
||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct 1017 ACACTCTCCGAAGTGTTGAAATCCAAGGTGTTAGAGAAGAGGAAGAATGGTTTGACGATC 1076
Query 869 ATAGAGTT--T-A-TTACTTTGTAGACCATGTAGAGAATCTTAGATTTGAT 915
||| |||| | | |||||||||||||||||||||| ||||||| ||||||
Sbjct 1077 ATACAGTTCATTAATTACTTTGTAGACCATGTAGAGGATCTTAGGTTTGAT 1127
> AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-11011792
REVERSE LENGTH=1125
Length=1125
Score = 289 bits (156), Expect = 4e-77
Identities = 301/369 (82%), Gaps = 17/369 (5%)
Strand=Plus/Plus
Query 542 TGATAAACTATAAGGGTAAATTAGGTTTGATTAATTTAGAC-TATGCTTACGATGGTGGA 600
|||||||||||||||||||| ||||| |||||||||| ||| |||| || || ||| |
Sbjct 749 TGATAAACTATAAGGGTAAAGTAGGTGTGATTAATTT-GACGCATGCCTATGAACGTGTA 807
Query 601 TTTCCCCTTGAGTTACGTATG-CGGGTTCTAGAGGATGTCGAGAAACAGGAATGGACTAC 659
||||||||| ||||||||||| | ||||||||||||| | ||||||||||||||| | ||
Sbjct 808 TTTCCCCTTCAGTTACGTATGAC-GGTTCTAGAGGATTTTGAGAAACAGGAATGGTCGAC 866
Query 660 ATATGTCTACACTTTGATGGCTGAGAATAAAGCCGTCATGGTTAACAACAATCTTTCCGT 719
||||||||||||||||||||||||||||| || || | |||| | | |||||||
Sbjct 867 ATATGTCTACACTTTGATGGCTGAGAATATAG---TC--G-TTAAGTA---TGTTTCCGT 917
Query 720 TGTTGGGGCAACTGCTTCAGGTGAAATTGTTTTGGCGAAGGATAA-TGCATATAAACCTT 778
|||||| |||||| ||||||| |||||||||| ||| | || ||||| ||||| |
Sbjct 918 GGTTGGGATGACTGCTACAGGTGATATTGTTTTGGTGAAA-ACAAATGCATGCAAACCGT 976
Query 779 TTTATGTTTTCTACTTTAACCCCGAAAGGAACACTCTCCGAAGTGTTGAGATTCAAGGTG 838
||||||| ||||||||||| |||| |||||||||||||| ||||||||| || |||||||
Sbjct 977 TTTATGTGTTCTACTTTAATCCCGGAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTG 1036
Query 839 TTAGAGAAGAGGA-AGAATGGTTTGGCGATCATAGAGTTTATTACTTTGTAGACCATGTA 897
|| ||||||| | | |||| | | ||||| ||||| ||||||||||||||||
Sbjct 1037 TTGGAGAAGACCACA-AATGCCTCAACTTTCATACAGTTTGCGCCTTTGTAGACCATGTA 1095
Query 898 GAGAATCTT 906
||| |||||
Sbjct 1096 GAGGATCTT 1104
Score = 145 bits (78), Expect = 9e-34
Identities = 84/87 (97%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGTGGTAAGACGTTTCTTGGCTGCAAAGAAGATTATTGGTGGCTCTGTAGCGGAA 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 622 ATGGCTTTGGTAAGACGTTTCTTGGCTGCAAAGAAGATTATTGGTGGCTCTGTAGCGAAA 681
Query 61 CTGAGGAAAGAAAATTCAGCAATATTA 87
||||||||||||| |||||||||||||
Sbjct 682 CTGAGGAAAGAAACTTCAGCAATATTA 708
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 141 bits (76), Expect = 1e-32
Identities = 321/433 (74%), Gaps = 42/433 (10%)
Strand=Plus/Plus
Query 402 GGAAA-AGATATGCATCAATGGGGTTTTGTATTACA-TAGCTTCTG-ACCCTGATGAAGA 458
||||| ||||||||||||||||||||||||||||| | ||| | | | | ||| ||
Sbjct 13 GGAAAGAGATATGCATCAATGGGGTTTTGTATTACTCTGGCTAGTTCAGC-TCATG--GA 69
Query 459 GGATGAAAAGATAGGTTGCTTT-GATGTTAGGT-TGGAGAAATTCAAGTTTTTAT-A-TG 514
|| ||||| || |||| ||| |||||| || |||||||||| |||| || | ||
Sbjct 70 T-ATCTTCTGATAGTTT-CTTTTGATTTTAGGTCTG-AGAAATTCAA-TTTT-ATCAATG 124
Query 515 TATCTCCCAATC-TGATAA-A-CTATAAACT-GATAAACTATAAGGGTAAATTAGGTTTG 570
||| | || | | | ||| ||| | ||||||||| || |||||||||||| |
Sbjct 125 CATCAAGCT-TCCTTTTTTCATCTACAAAATTGATAAACTACAAAGGTAAATTAGGTGGG 183
Query 571 ATTAATTTAGAC-TATGCTTACGATGGTGGATTTCCCCTTGAGTTACGTATGCGGGTTCT 629
||| |||| | | ||| | | | ||||| || |||| |||||||||||||| |||||||
Sbjct 184 ATTGATTTGG-CGTATAATCATGGTGGTGTATATCCCGTTGAGTTACGTATGTGGGTTCT 242
Query 630 AGAGGATGTCGAGAAACAGGAATGGACTACATATGTCTACACTTTGATGGCTGAGAATA- 688
|||||||||||||||||| |||||| | | | |||| ||| ||||| || || ||
Sbjct 243 AGAGGATGTCGAGAAACACGAATGGTCGAGACATGTTTACTCTTTGCCGGA-GACCATTG 301
Query 689 AAGC-C-GTCA-TGGTTAACAACAATCTTTCCGTTGTTGGG--GCAACTGCT-TCAGGTG 742
|| | | || || | ||| ||||| ||| ||||| |||| | || |||| | |||||
Sbjct 302 AATTTCAG-CAGTG-T-AACTACAATATTTGCGTTGGTGGGATG-AA-TGCTAT-AGGTG 355
Query 743 AAATTGTTTTGGCGAAGG-ATA-ATG-C-ATAT--AAACCTTTTTATGTTTTCTACTTTA 796
|||||||||| || || ||| || | | || ||||| ||||||||||||||||| |
Sbjct 356 AAATTGTTTTTTCGGAGTCATATATATCTACATCCAAACCGTTTTATGTTTTCTACTTCA 415
Query 797 ACCCCGAAAGGAA 809
| ||||||| |||
Sbjct 416 ATCCCGAAAAGAA 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5