BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336209
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30935.1 | Symbols: | pseudogene, F-box protein family, con... 405 3e-112
AT1G30940.1 | Symbols: | pseudogene, F-box protein -related, c... 313 2e-84
AT1G30930.1 | Symbols: | F-box family protein | chr1:11014783-... 211 6e-54
AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-... 165 5e-40
AT3G57580.1 | Symbols: | F-box and associated interaction doma... 60.2 2e-08
> AT1G30935.1 | Symbols: | pseudogene, F-box protein family, contains
F-box domain Pfam:PF00646 | chr1:11017436-11018990 REVERSE
LENGTH=1555
Length=1555
Score = 405 bits (219), Expect = 3e-112
Identities = 294/329 (89%), Gaps = 9/329 (3%)
Strand=Plus/Plus
Query 6 CATCCCAAAGGAAGATGAAGATGAAAAGCGTGTGTTATGTGACCCTCTCACAGGACAATA 65
|||||||||||||||||| |||| |||||||||||| |||||||||||||| || || ||
Sbjct 345 CATCCCAAAGGAAGATGAGGATGCAAAGCGTGTGTTGTGTGACCCTCTCACTGGCCAGTA 404
Query 66 TGTTATCTTACCTGAACTTAGAGGTCACTCGT-ATTCGTATAGCTATTTAGGGTTTGATC 124
||| |||||||||||||||||| || | || ||||||||||||||||||||||||||
Sbjct 405 TGTGATCTTACCTGAACTTAGA-GT-A--GGTGGTTCGTATAGCTATTTAGGGTTTGATC 460
Query 125 CGGTTGATAAGGAATTCAAGGTGTTGTTCATGAATACTAGTGATTTTATGGCTTATAATT 184
|| ||||||||||||||||||| ||||||||| ||||| |||||||||| |||| ||
Sbjct 461 CGATTGATAAGGAATTCAAGGTATTGTTCATGGATACTTGTGATTTTATAGCTTCGAAGG 520
Query 185 AT-ACAGATCATCATATTTTGACACTAGGAGCTGGAGAATTGAAATGGAGGAAGATCCAA 243
|| | ||||||| ||||||||||| | ||| ||||||||||||| |||||||||||||||
Sbjct 521 ATGA-AGATCATTATATTTTGACATTGGGAACTGGAGAATTGAAGTGGAGGAAGATCCAA 579
Query 244 TGTCCTTTTACACATGAGCCTTTTTGGGAAAGGATATGCATTAATGGGGTTTTGTATTAC 303
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 580 TGTCCTTTTACACATGAGCCTTTTTGGGAGAGGATATGCATTAATGGGGTTTTGTATTAC 639
Query 304 TCAGCTCAAC-ATTCTGATTCTAATGGAA 331
|| ||| | | ||||||||||||||||||
Sbjct 640 TCTGCTTA-CTATTCTGATTCTAATGGAA 667
Score = 315 bits (170), Expect = 5e-85
Identities = 247/283 (87%), Gaps = 9/283 (3%)
Strand=Plus/Plus
Query 368 ATGATGGTGGATTTCCCCTTGAGTT-ACGTATGTGGGTTCTAGAAGATGTCCATAAACCG 426
||| |||||||||||| || |||| | ||||||||||| |||| |||||| | ||||||
Sbjct 797 ATGTTGGTGGATTTCCTGTTAAGTTGA-GTATGTGGGTTTTAGAGGATGTCGAGAAACCG 855
Query 427 GAATGGTCGAAATATGTCTACACTTTGAGGGA-TGATAATAAAGTCGTTAAGGTTAACTC 485
|||||||||||| |||||||| ||||| ||| || | | ||||||||||||||||| |
Sbjct 856 GAATGGTCGAAACATGTCTACTCTTTG-TGGACGGAGAGTGAAGTCGTTAAGGTTAAC-C 913
Query 486 -TAATCTTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCG-TTCAAGTAT 543
|||||||||||||||||||||||||| ||||||||||||||||| ||| | ||| ||
Sbjct 914 GGAATCTTTCTGTTTCTGGGATGACTGCAACCGGTGACATTGTTTTATCGATGGAAG-AT 972
Query 544 GCATCTAATCCGTATTATGTTTTCTACTTCAATCTGGAAAGGAACACTCTCCAAGTCCAA 603
||| ||||||||| |||||||||| ||||||||| ||| |||||||||||||||||||||
Sbjct 973 GCAACTAATCCGTTTTATGTTTTCAACTTCAATCCGGATAGGAACACTCTCCAAGTCCAA 1032
Query 604 AGTGTTGAA-TCCAAGGTCTTGAAGCTAATCGTGATCGCATAG 645
||||||||| |||||||||||| |||||||||||||| |||||
Sbjct 1033 AGTGTTGAAATCCAAGGTCTTGGAGCTAATCGTGATCACATAG 1075
> AT1G30940.1 | Symbols: | pseudogene, F-box protein -related,
contains TIGRfam:TIGR01640 F-box protein interaction domain
| chr1:11021984-11023320 REVERSE LENGTH=1337
Length=1337
Score = 313 bits (169), Expect = 2e-84
Identities = 266/312 (85%), Gaps = 9/312 (3%)
Strand=Plus/Plus
Query 1 ATGCGCATCCCAAAGGAAGATGAAGATGAAAAGCGTGTGTTATGTGACCCTCTCACAGGA 60
||| |||||| |||||| ||||| |||| ||||| ||| |||||||||||||||||||||
Sbjct 328 ATGTGCATCCGAAAGGAGGATGAGGATGCAAAGCATGTTTTATGTGACCCTCTCACAGGA 387
Query 61 CAA-TATGTTATCTTACCTGAACTTAGAGGTCACTCGT-ATTCGTATAGCTATTTAGGGT 118
|| ||||| |||||||||||||||||| || | || |||||||||||||||||||||
Sbjct 388 -AAGTATGTGATCTTACCTGAACTTAGA-GT-A--GGTGATTCGTATAGCTATTTAGGGT 442
Query 119 TTGATCCGGTTGATAAGGAATTCAAGGTGTTGTTCATGAATACTAGTGATTTTATGGCTT 178
||||||| |||||||||||||||||||| |||||||||| |||| || || ||| ||||
Sbjct 443 TTGATCCAGTTGATAAGGAATTCAAGGTATTGTTCATGACTACTCGTAATAATATAGCTT 502
Query 179 ATAATTATAC-AGATCATCATATTTTGACACTAGGAGCTGGAGAATTGAAATGGAGGAAG 237
|| || | ||||||| ||||| ||||| | ||| |||| |||||||||||||||| |
Sbjct 503 GGAAGGAT-CTAGATCATTATATTCTGACATTGGGAACTGGGGAATTGAAATGGAGGAGG 561
Query 238 ATCCAATGTCCTTTTACACATGAGCCTTTTTGGGAAAGGATATGCATTAATGGGGTTTTG 297
|||| |||| ||||||| ||||||||| | ||||||||||| || || ||||| ||||||
Sbjct 562 ATCCGATGTGCTTTTACCCATGAGCCTGTGTGGGAAAGGATTTGTATCAATGGAGTTTTG 621
Query 298 TATTACTCAGCT 309
||||||||||||
Sbjct 622 TATTACTCAGCT 633
Score = 289 bits (156), Expect = 3e-77
Identities = 241/281 (86%), Gaps = 9/281 (3%)
Strand=Plus/Plus
Query 368 ATGATGGTGGATTTCCCCTTGAGTT-ACGTATGTGGGTTCTAGAAGATGTCCATAAACCG 426
|||||||||||| | || || |||| | ||||||||||| |||| |||||| | ||||||
Sbjct 772 ATGATGGTGGATCTACCGTTAAGTTGA-GTATGTGGGTTTTAGAGGATGTCGAGAAACCG 830
Query 427 GAATGGTCGAAATATGTCTACACTTTGAGGGA-TGATAATAAAGTCGTTAAGGTTAACTC 485
|||||||||||| |||||||| | ||| ||| || | | ||||||||||||||||| |
Sbjct 831 GAATGGTCGAAACATGTCTACTCGTTG-TGGACGGAGAGTCAAGTCGTTAAGGTTAAC-C 888
Query 486 -TAATCTTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCGTTCAAG-TAT 543
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 889 ATAATCTTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCGA-CAAAATAT 947
Query 544 GCATCTAATCCGTATTATGTTTTCTACTTCAATCTGGAAAGGAACACTCTCCAAGTCCAA 603
|||||| | |||| |||||||||||||||||||| |||||||| ||||| ||||||| |
Sbjct 948 GCATCTCAGCCGTTTTATGTTTTCTACTTCAATCCAGAAAGGAAAACTCTGCAAGTCCCA 1007
Query 604 AGTGTTGAA-TCCAAGGTCTTGAAGCTAATCGTGATCGCAT 643
||||||||| || | ||||||| ||||||||||| | ||||
Sbjct 1008 AGTGTTGAAGTCGAGGGTCTTGGAGCTAATCGTGCTTGCAT 1048
> AT1G30930.1 | Symbols: | F-box family protein | chr1:11014783-11015913
REVERSE LENGTH=1131
Length=1131
Score = 211 bits (114), Expect = 6e-54
Identities = 157/177 (89%), Gaps = 5/177 (3%)
Strand=Plus/Plus
Query 472 GTTAAGGTTAACTC-TAATCTTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTT 530
||||||||||| | |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 868 GTTAAGGTTAA-GCAGAATCTTTCCGTTGCTGGGATGACTGCTACCGGTGACATTGTTTT 926
Query 531 GT-CGTTCAAGTATGCATCTAATCCGTATTATGTTTTCTACTTCAATCTGGAAAGGAACA 589
|| | | || | ||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct 927 GTTCATGAAATT-TGCGTCTAATCCGTTTTATGTTTTCTACTTCAATCCGGAAAGGAACT 985
Query 590 CTCTCCAAGTCCAAAGTGTTGAA-TCCAAGGTCTTGAAGCTAATCGTGATCGCATAG 645
||||| ||||||||||||||||| |||||||||||| |||||||| |||||||||||
Sbjct 986 CTCTCGAAGTCCAAAGTGTTGAAATCCAAGGTCTTGGAGCTAATCCTGATCGCATAG 1042
> AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-11005444
REVERSE LENGTH=1203
Length=1203
Score = 165 bits (89), Expect = 5e-40
Identities = 141/166 (85%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 368 ATGATGGTGGATTTCCCCTTGAGTTACGTATGTGGGTTCTAGAAGATGTC-CATAAACCG 426
|||||||||| |||||||| ||||| || ||||||||||||| |||||| | |||
Sbjct 824 ATGATGGTGGTTTTCCCCTAAAGTTAAGTGTGTGGGTTCTAGAGGATGTCGGA-AAAGAA 882
Query 427 GAATGGTCGAAATATGTCTACACTTTGAGGGATGATAATAAAGTCGTTAAGGTTAACTCT 486
|||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| | |
Sbjct 883 GAATGGTCGACATATGTCTACACTTTGAGGGATGATAATAAAGTCGATCAGGTTAAATAT 942
Query 487 AATCTTTCTGTT-TCTGGGATGACTGCTACCGGTGACATTGTTTTG 531
||||| || ||| | |||| |||||||| | ||||| |||||||||
Sbjct 943 AATCTCTCCGTTGT-TGGGGTGACTGCTTCAGGTGAAATTGTTTTG 987
> AT3G57580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:21320491-21322379 REVERSE LENGTH=1889
Length=1889
Score = 60.2 bits (32), Expect = 2e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 275 GGATATGCATTAATGGGGTTTTGTATTACTCAGCT 309
|||||||||||||||||||||||||||||| ||||
Sbjct 940 GGATATGCATTAATGGGGTTTTGTATTACTTAGCT 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31145171140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5