BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336216
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-1101... 508 3e-143
AT5G42430.1 | Symbols: | F-box and associated interaction doma... 348 6e-95
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 303 1e-81
AT1G30921.1 | Symbols: | pseudogene, hypothetical protein | ch... 241 1e-62
AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-... 233 2e-60
AT1G33010.1 | Symbols: | F-box and associated interaction doma... 93.5 3e-18
> AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-11011792
REVERSE LENGTH=1125
Length=1125
Score = 508 bits (275), Expect = 3e-143
Identities = 351/385 (91%), Gaps = 15/385 (4%)
Strand=Plus/Plus
Query 415 TCTTCTACATTGATAAACTATAAGGGTAAATTAGGTGTGATTAATTTGAGGCATGCCAAT 474
||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 739 TCTACTACATTGATAAACTATAAGGGTAAAGTAGGTGTGATTAATTTGACGCATGCCTAT 798
Query 475 G-ATGTTATATTTCCCCTTCAGTTAAGTATGACGGTTCTAGAGGATTTCGAGAAACAGGA 533
| | | | ||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 799 GAACG-TGTATTTCCCCTTCAGTTACGTATGACGGTTCTAGAGGATTTTGAGAAACAGGA 857
Query 534 ATGGTCAACATATGTCTACACTTTGATGGCTGAGAATATAGTCGTTAAGGAGAAACACTA 593
|||||| ||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 858 ATGGTCGACATATGTCTACACTTTGATGGCTGAGAATATAGTCGTT-A--AG------TA 908
Query 594 TGTTTCCGTTGTTGGGGTGACTGCTACAGGTGAAATTGTTTTGGTGAATAA-GAATGCAT 652
||||||||| |||||| |||||||||||||||| |||||||||||||| || |||||||
Sbjct 909 TGTTTCCGTGGTTGGGATGACTGCTACAGGTGATATTGTTTTGGTGAA-AACAAATGCAT 967
Query 653 GCAAACCGTTTTATGTGTTCTACTTTAA-GCCGGAAAGTAACACTCTTCTGAGTGTTGAA 711
|||||||||||||||||||||||||||| |||| ||| |||||||| || |||||||||
Sbjct 968 GCAAACCGTTTTATGTGTTCTACTTTAATCCCGG-AAGGAACACTCTCCTAAGTGTTGAA 1026
Query 712 ATCCAAGGTGTTGGAGAAGACCACAAATGGTTCAACTTTCATACAGTTTGCGCCTTTGTA 771
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1027 ATCCAAGGTGTTGGAGAAGACCACAAATGCCTCAACTTTCATACAGTTTGCGCCTTTGTA 1086
Query 772 GACCATGTAGAGGATCTTCAGTTTA 796
|||||||||||||||||||||||||
Sbjct 1087 GACCATGTAGAGGATCTTCAGTTTA 1111
> AT5G42430.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:16971312-16972499 REVERSE LENGTH=1188
Length=1188
Score = 348 bits (188), Expect = 6e-95
Identities = 537/696 (77%), Gaps = 61/696 (9%)
Strand=Plus/Plus
Query 129 GTTTGATCCGATTGGTAATG-AATGGAAGGTATTGTC-CATGAACAATTTAGCTAAA-GA 185
|||||||||| |||| || | ||| ||||||||| | |||| || | || |||| |
Sbjct 450 GTTTGATCCGGTTGGCAA-GCAATTCAAGGTATTG-CTCATG---AA-TAAGATAAACAA 503
Query 186 TTATG--A-AAAGGCTCATT-ATATTCTGACATTAGGAACTGA-AAAAGTGAGATGGAGA 240
| ||| | ||||| |||| ||||| ||||||| |||||| | ||||||||||| | ||
Sbjct 504 TAATGAAACAAAGG-ACATTCATATTTTGACATTGGGAACT-AGAAAAGTGAGAT-G-GA 559
Query 241 TGGAGAGAGATCCAAC---GTCCCTTCAACCATGA-T-CTTCAGGGTGCAGGGATATGCA 295
| || ||||||||| | ||||| | |||| | | ||| | || | |||||||||
Sbjct 560 --G-GA-AGATCCAACAATGCCCCTTGATCCAT-ATTGTTTC-GCATGAATGGATATGCA 613
Query 296 TTAGTGGGGTTTTGTATTACCTAGCTTACGAA-AGTGATGATTGGATAT-ATGT-TATAG 352
| | ||||| |||||||||| ||||||| || | |||||||| | | || |||||
Sbjct 614 TCAATGGGGCTTTGTATTACATAGCTTA-TAACATTGATGATT-TCT-TGGGGTATATAG 670
Query 353 GTTGCTTTGATGTTC-GAACCGAGACATTCAAGTCTCTAAATCT-----GA-ACTGCTCA 405
||||||||||| || | |||||| |||||| | ||||||||| | |||| |
Sbjct 671 TTTGCTTTGATG-TCAGGTCCGAGAAATTCAAATGTCTAAATCTAAACCAAGACTGTTTT 729
Query 406 TATGGATGGTCTTCTACATTGATAAACTATAAGGGTAAATTAGGTGTGATTAATTTGAGG 465
| || | | ||| ||| ||||||| ||||||| ||||||||||||||| ||||||||| |
Sbjct 730 TCTGAACGATCTACTAAATTGATATACTATAAAGGTAAATTAGGTGTGGTTAATTTGAAG 789
Query 466 CATGC-CAATGATGTTATATTTCCCCTTCAGTTAAGTATGACGGTTCTAGAGGATTTCGA 524
|||| | ||| | | |||||||||| ||||| ||||| ||||||||||||| | ||
Sbjct 790 TATGCTC-ATGGCGGTGGATTTCCCCTTAAGTTATGTATGTGGGTTCTAGAGGATGTGGA 848
Query 525 GAAACAGGAATGGTCAACATATGTCTACACTTTGATGGCTGAGAATATAGTCGTTAAGGA 584
||||||||||||| |||||| ||| |||||||||| || |||| ||| |||||||||||
Sbjct 849 GAAACAGGAATGGACAACATCTGTGTACACTTTGAGGGATGAGGATAGAGTCGTTAAGG- 907
Query 585 GAAAC-ACTATGTTTCCGTTGTTGGGGTGACTGCTACAGGTGAAATTGTTTTGGTGAATA 643
|| || || ||| |||||||| | ||||||||||||||||||||||||| ||| |
Sbjct 908 TTTACTACGATCTTTTTATTGTTGGGATAACTGCTACAGGTGAAATTGTTTTGGCGAAGA 967
Query 644 AGAATGCATGCAAACCGTTTTATGTGTTCTACTTTAAGC-CGGAAAGTAACACTCTTCTG 702
| || | ||| || ||||||||||| ||||||||||| | | ||||| |||||||| ||
Sbjct 968 AAAAGGTATGTAAGCCGTTTTATGTCTTCTACTTTAATCTC-GAAAGGAACACTCTCCTA 1026
Query 703 AGTGTTGAAATCCAAGGTGTTGGAGAAGACCACAAATGGTTCAACT-TTCATACAGTTTG 761
|||||||||||||||||| |||||||| | | |||| | || || || |||
Sbjct 1027 AGTGTTGAAATCCAAGGTTTTGGAGAATA-C-CAAA--G-----CTGTT-GTAGTGTTCA 1076
Query 762 CGCCTTTGTAGACCATGTAGAGGATCTTCA-GTTTA 796
|||||||||||||||||||||||||||| | |||||
Sbjct 1077 CGCCTTTGTAGACCATGTAGAGGATCTTAATGTTTA 1112
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 303 bits (164), Expect = 1e-81
Identities = 486/631 (77%), Gaps = 64/631 (10%)
Strand=Plus/Plus
Query 203 ATATTCTGACATTAGGAACTGAAAAAGTGAGATGGAGATGGAGAGAGATCCAACGTCCC- 261
||||||||||||||||||||||||| ||||| ||||| ||||| || | |||||
Sbjct 320 ATATTCTGACATTAGGAACTGAAAATGTGAGGTGGAG--GGAGA-TTAT---ATGTCCCT 373
Query 262 -TTCAACCATGAT-CT--TCAGGGTGCAG-GGATATGCATTAGTGGGGTTTTGTATTACC 316
||| | ||||| || || ||| || ||||||||| | ||||||||||||||||
Sbjct 374 TTTC-A-TATGATCCTCCTC-GGGAAAAGCCGATATGCATCAATGGGGTTTTGTATTACA 430
Query 317 T-AGCT-TACGAAAGTGATGATTGGATAT-ATGTTATAGGTTGCTTTGATGTTCGAACCG 373
| || | | || ||| | ||| || | | |||||||||||||||||||| | | |
Sbjct 431 TAAG-TGT-CGGTAGT--T-ATT--AT-TCA-CTTATAGGTTGCTTTGATGTTAGGTCTG 481
Query 374 AGACATTCAAGTCTCTAAATCT--G---A-ACTGCTCATATGGA-TGGTCTTCTACATTG 426
||| |||||||| | || |||| | | | |||| | | |||||| | ||||
Sbjct 482 AGAAATTCAAGTTTTTATATCTAAGCCCAGATTGCT-TTCCAAACTGGTCTAGAAAATTG 540
Query 427 ATAAACTATAAGGGTAAATTAGGTGTGA-T-TAATTTGAGGCATGCCAATGATGTTATAT 484
|||||||||||||||||||||||||||| | |||| || | || | | ||| | ||
Sbjct 541 ATAAACTATAAGGGTAAATTAGGTGTGACTATAATG-GAAG-ATT--A-TCATGGTGGAT 595
Query 485 TTCCCCTTCAGTTAAGTATGACGGTTCTAGAGGATTTCGAGAAACAGGAATGGTCAACAT 544
|||||||| |||| ||||| ||||||||||||| |||||||| |||||||| | | ||
Sbjct 596 TTCCCCTTAAGTTGCGTATGTGGGTTCTAGAGGATGTCGAGAAAGAGGAATGGACGAGAT 655
Query 545 ATGTCTACACTTTGATGGC-TGAGAATATAGTCGTTAAGGAGAAACACTATGTTTCCGTT 603
||| ||||||||||| ||| |||||||| ||||| | ||| || ||||||| | |||
Sbjct 656 ATGCCTACACTTTGA-GGCCTGAGAATAAAGTCG--A-GGACAATGACTATGTATATGTT 711
Query 604 GTTGGGGTGACTGCTACAGGTGAAATTGTTTTGGTGAATA-AGAATGCATGCAAACCGTT 662
||||||| |||||| ||||||||||||||||| ||| | ||||||||| ||||||||
Sbjct 712 GTTGGGGCAACTGCTTCAGGTGAAATTGTTTTGACGAA-ACAGAATGCATATAAACCGTT 770
Query 663 TTATGTGTTCTACTTTAAG-CCGGAAAGTAACACTCTTCTGAGTGTTGAAATCCAAGGTG 721
|||||| |||||||||| | || ||||| |||||||| || || ||||||||||||||||
Sbjct 771 TTATGTTTTCTACTTTA-GTCCTGAAAGGAACACTCTCCTAAGCGTTGAAATCCAAGGTG 829
Query 722 TTGGAGAAGACCACAAATGGTTCAACTTTCATACA-GTTTGCGCCTTTGTAGACCATGTA 780
|||||||||| | ||||| | | |||| | |||| | |||||||||||||||
Sbjct 830 TTGGAGAAGA--A----TGGTTTTA-T--CATA-ATGTTTACTACTTTGTAGACCATGTC 879
Query 781 GAGGATCTTCAG-TTTAATATTGTGAAGACA 810
||||||||| || ||| || || ||||||||
Sbjct 880 GAGGATCTT-AGGTTTGATGTTATGAAGACA 909
> AT1G30921.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11007112-11008238 REVERSE LENGTH=1127
Length=1127
Score = 241 bits (130), Expect = 1e-62
Identities = 301/380 (79%), Gaps = 25/380 (7%)
Strand=Plus/Plus
Query 423 ATTGATAAACTATAAGGGTAAATTAGGTGTGATTAATTTG-AGGCATGCCAATGATGTTA 481
|||||||||||||||||||||||||||| || || ||||| || | | |||||| |
Sbjct 751 ATTGATAAACTATAAGGGTAAATTAGGTTTGGTTGATTTGGAGA-AGGATTATGATGCTG 809
Query 482 TATTTCCCCTTCAGTTAAGTATG-ACGGTTCTAGAGGATTTCGAGAAACAGGAATGGTC- 539
|| || |||| |||| ||||| | ||||||||||||| |||||||| ||||| |
Sbjct 810 GATATCTCCTTGGGTTACGTATGCA-GGTTCTAGAGGATGTCGAGAAAGGGGAATAGAAG 868
Query 540 AACATATGTCTACACTTTGATGGCTGA-GA-A-TATAGTCGTTAAGGAGAAACACTATGT 596
|| ||||| ||||||| ||| |||||| || | || |||| |||| | | || || |
Sbjct 869 AA-ATATGCCTACACTGTGAGGGCTGATGAGAATAAAGTCTTTAAC-A-A--CA--ATCT 921
Query 597 TTCCGTTGTTGGGGTGACTGCTACAGGTGAAATTGTTTTGGTGAATAAGAATGCAT-GCA 655
|||||||||||||| |||||| |||||||||||||||||| ||| || |||||| | |
Sbjct 922 TTCCGTTGTTGGGGCAACTGCTTCAGGTGAAATTGTTTTGGCGAAGAATTATGCATAG-A 980
Query 656 AACCGTTTTATGTGTTCTACTTTAAGCCGGAAAGTAACACTCTTCTGA-GTGTTGAAATC 714
||||||||||||| ||||| ||||| || || || |||||||| | || |||||||||||
Sbjct 981 AACCGTTTTATGTTTTCTAATTTAATCCCGATAGGAACACTCTCC-GAAGTGTTGAAATC 1039
Query 715 CAAGGTGTTGGAGAAGACCACA-AATGGTTCAACTTTCATACAGTT--TGCGC--CTTTG 769
||||||||| ||||||| | | ||||||| || |||||||||| | |||||
Sbjct 1040 CAAGGTGTTAGAGAAGAGGA-AGAATGGTTTGACGATCATACAGTTCATTAATTACTTTG 1098
Query 770 TAGACCATGTAGAGGATCTT 789
||||||||||||||||||||
Sbjct 1099 TAGACCATGTAGAGGATCTT 1118
> AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-11005444
REVERSE LENGTH=1203
Length=1203
Score = 233 bits (126), Expect = 2e-60
Identities = 531/717 (74%), Gaps = 66/717 (9%)
Strand=Plus/Plus
Query 124 TTAGGGTTTGATCCGATTGGTAATG-AATGGAAGGTATT-GT-CC-ATGA-ACAATTTAG 178
||||||||||||||||||| || | ||| |||||||| | || || | | |||| |
Sbjct 478 TTAGGGTTTGATCCGATTGACAA-GCAATTCAAGGTATTAATCCCGAT-ATTCGATTTTG 535
Query 179 CTAAAGATTATGAAAAGGCTCATTATATTCTGACATTAGGAACTGAAAAAGTGAGATGGA 238
| || | || ||| || |||| ||||||| ||||||||| |||||| ||| |||
Sbjct 536 AT-AA-A-CATCAAACGGATCATCATATTCTTACATTAGGAGCTGAAACAGT----TGG- 587
Query 239 GATGGA-GAGAGATCCAA-CGTCCCTTCAAC-C-ATGATCTTC--AG-GGTGCAGGGATA 291
| |||| || |||||||| | |||||| || | || || || || || | ||
Sbjct 588 G-TGGAGGA-AGATCCAATC-TCCCTT--ACGCTATCTTCCTCATAGTAATGGAACAATT 642
Query 292 TGCATTAGTGGGGTTTTGTATTACCTAGCTTACGAA--AGTGATG-ATTGGAT--ATATG 346
||||| | |||| |||||||||||||||| || || | | ||| | ||||| | |||
Sbjct 643 TGCATCAATGGGATTTTGTATTACCTAGC-TA-AAATTAATTATGCAATGGATAAAAATG 700
Query 347 TTATAGGTTGCTTTGATGTTCGAACCGAGACA-TTCAAGTCTCTAAATCTGAACTGCTCA 405
| ||| ||||||||||||| | | |||| | || || |||| ||| || | ||
Sbjct 701 TGCTAGTTTGCTTTGATGTTAGGTCTGAGA-ATTTTGTGTTTCTACGTCTTAA---CACA 756
Query 406 TA-TGGATGGTCTTCTACATTGATAAACTATAAGGGTAAATTAGGTGTGATTAATTTGAG 464
|| | | | ||| ||| |||| |||||||||||||||||||||| ||||||| | ||
Sbjct 757 TACT-GCTCTTCTACTAAATTGGTAAACTATAAGGGTAAATTAGGCATGATTAA-TCAAG 814
Query 465 -GCATGCCAATGAT-GTTATATTTCCCCTTCAGTTAAGTATGACGGTTCTAGAGGATTTC 522
| ||| ||||| || | |||||||| |||||||| || ||||||||||||| ||
Sbjct 815 AGTATGTTGATGATGGTGGT-TTTCCCCTAAAGTTAAGTGTGTGGGTTCTAGAGGATGTC 873
Query 523 -GAGAAACAGGAATGGTCAACATATGTCTACACTTTGATGGCTGAGAATATAGTCGTTAA 581
|| ||| | |||||||| ||||||||||||||||||| || ||| |||| ||||| | |
Sbjct 874 GGA-AAAGAAGAATGGTCGACATATGTCTACACTTTGAGGGATGATAATAAAGTCGATCA 932
Query 582 GGAGAAACACT-ATGTTTCCGTTGTTGGGGTGACTGCTACAGGTGAAATTGTTTTGGTGA 640
|| ||| | | || | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 933 GGTTAAATA-TAATCTCTCCGTTGTTGGGGTGACTGCTTCAGGTGAAATTGTTTTGGTGA 991
Query 641 ATAAGAATGCATGCA---AA-CCGTTTTATGTGTTCTACTTTAAGCCGGA-AAGTAACAC 695
| |||| | || || || || |||||||| || |||||||| || || || || ||
Sbjct 992 AGAAGACT-CAAACACTTAAGCCATTTTATGTTTTATACTTTAACCCCGACAA-AAATAC 1049
Query 696 TCTTC-TGAGTGTTGAAATCCAAGGTGTTGGAGAAGACCACAAATGGT-TCAACTTTCAT 753
|| || | | ||||||| | ||| ||| | ||| || || | | | ||
Sbjct 1050 TC-TCTTAACTGTTGAAGT-CAA-----AGGACTACACCGGGGATTGTAT-GCCGTACAC 1101
Query 754 ACAGTTTGCGCCTTTGTAGACCATGTAGAGGATCTTCAGTTTAATATTGTGAAGACA 810
| | ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1102 AGAATTTACGCCTTTGTAGACCATGTAGAGGATCTTGAGTTTAATATTATGAAGACA 1158
> AT1G33010.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11959287-11960591 FORWARD LENGTH=1086
Length=1086
Score = 93.5 bits (50), Expect = 3e-18
Identities = 213/287 (74%), Gaps = 30/287 (10%)
Strand=Plus/Plus
Query 420 TAC-ATTGATAAACTATAAGGGTAAATTAGGTGTGATTAATTTGAGGCATGCCAATGATG 478
||| ||||||||||||||||||||||||||||| ||||| || || || | | ||| |
Sbjct 536 TACAATTGATAAACTATAAGGGTAAATTAGGTGGGATTAGTTGGAATAAT-C-A-TGAGG 592
Query 479 TTATATTTCCCCTTCAGTTAAGTATGACGGTTCTAGAGGATTTCGAGAAACAGGAATGGT 538
|| | ||| || |||| |||| ||||||||| ||| |||||||||| |||||||
Sbjct 593 TTGC-T--CCCGTTGAGTTGTCTATGTGGGTTCTAGAAGATGTCGAGAAACAAGAATGGT 649
Query 539 C-AACATATGTCTACACTTTGATGGCTGAGAATATAGTCGTTAAGGAGAAACACTATGTT 597
| || | ||||||||| ||| || || ||||| ||||| ||| | | | | |||
Sbjct 650 CCAAAA-ATGTCTACA-TTT--TGCCTAAGAATGTAGTCCCTAAT-A-A--C--TG-GTT 698
Query 598 TC-CGTTGTTGGGGTGACTGCT-ACAGGTGAAATTGTTTT---GGTGAATAAGAATGCAT 652
| || || ||| ||||||| | | |||||| |||||||| || | | | | | ||
Sbjct 699 GCACGCTGCTGGAGTGACTGTTGA-AGGTGATATTGTTTTCTCGGAGGCT--GTA-GTAT 754
Query 653 GCAAACCGTTTTATGTGTTCTACTTTAAGCCGGAAA-GTAACACTCT 698
||| |||||| |||| ||||||||||| || |||| | ||||||||
Sbjct 755 CCAATCCGTTTGATGTTTTCTACTTTAATCCCGAAAAG-AACACTCT 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5