BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336227
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33020.1 | Symbols: | F-box and associated interaction doma... 139 3e-32
AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-... 104 1e-21
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 82.4 5e-15
AT1G47350.1 | Symbols: | F-box associated ubiquitination effec... 76.8 3e-13
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 63.9 2e-09
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 62.1 7e-09
AT5G38810.1 | Symbols: | F-box and associated interaction doma... 56.5 3e-07
> AT1G33020.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11962746-11964832 FORWARD LENGTH=1647
Length=1647
Score = 139 bits (75), Expect = 3e-32
Identities = 171/214 (80%), Gaps = 20/214 (9%)
Strand=Plus/Plus
Query 25 AGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCTCATCAACAGTTTA 84
|||||||||||||||||||||||||||||||||||||||||||||| ||| || | | ||
Sbjct 463 AGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCGCATGAA-A-TATA 520
Query 85 GTTAA--TGAAAC-G--GTTCATCATATTCTGACATTAGAAGCTGG-AATAATGAGGTGG 138
| | || | | ||||| |||||||||||||||||| |||| || ||||||||||
Sbjct 521 ATGATCGTGGTATTGTTGTTCACCATATTCTGACATTAGAACCTGGCAA-AATGAGGTGG 579
Query 139 AGGAAGATACAATATTGTCCGGTTA-CCTAT-AAGCCTTT-TAGAAAAGGGATATGCATC 195
|| || || | || |||| ||| || || || ||||| | | || | ||||||| |
Sbjct 580 AGAAAAATCCGAT---GTCCC-TTAGCCCATGAA-CCTTTCTGGGAA-GAGATATGCGCC 633
Query 196 AATGGGGTTTTGTATTACTTTGCT-AATCCAACT 228
|||||||||||||||||||| ||| || ||||||
Sbjct 634 AATGGGGTTTTGTATTACTTAGCTGAA-CCAACT 666
> AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-11005444
REVERSE LENGTH=1203
Length=1203
Score = 104 bits (56), Expect = 1e-21
Identities = 160/207 (77%), Gaps = 20/207 (10%)
Strand=Plus/Plus
Query 28 TTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCTCATC-A-A--C-AGTT 82
||||||||||||||||||||||||||||||||||||||||| || | | | | | ||
Sbjct 475 TTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTAATCC-CGATATTCGATTT 533
Query 83 TAGTTAA---TGAAACGGTTCATCATATTCTGACATTAGAAGCTGGAATAAT-GAGGTGG 138
| | ||| | |||||| |||||||||||| ||||||| ||||| || | | | |||||
Sbjct 534 T-GATAAACATCAAACGGATCATCATATTCTTACATTAGGAGCTGAAACAGTTG-GGTGG 591
Query 139 AGGAAGATACAATATTGTCCGGTTAC-CTATAAGCCTTTTAGAAAAGGGATA-T--GCAT 194
|||||||| |||| | || |||| |||| ||| ||| || || | | | ||||
Sbjct 592 AGGAAGATCCAATCTC--CC--TTACGCTATCTTCCTCATAGTAATGGAACAATTTGCAT 647
Query 195 CAATGGGGTTTTGTATTACTTTGCTAA 221
||||||| ||||||||||| | |||||
Sbjct 648 CAATGGGATTTTGTATTACCTAGCTAA 674
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 82.4 bits (44), Expect = 5e-15
Identities = 104/131 (79%), Gaps = 12/131 (9%)
Strand=Plus/Plus
Query 89 ATGAAACGGTTCATCATATTCTGACATTA-GAAGCTGGAATAA--TGAGGTGGAGGAAGA 145
||||| |||| ||||||||||||||||| ||| || ||| || ||||||||||| |||
Sbjct 305 ATGAATGGGTTTATCATATTCTGACATTAGGAA-CT-GAA-AATGTGAGGTGGAGGGAGA 361
Query 146 TACAATATTGTCCGGTTACCTATAAGCCT--TTTAGAAAAG-GGATATGCATCAATGGGG 202
| ||| ||||| || | ||| | ||| | |||||| |||||||||||||||||
Sbjct 362 T--TATA-TGTCCCTTTTCATATGATCCTCCTCGGGAAAAGCCGATATGCATCAATGGGG 418
Query 203 TTTTGTATTAC 213
|||||||||||
Sbjct 419 TTTTGTATTAC 429
> AT1G47350.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:17358447-17360722 REVERSE LENGTH=1587
Length=1587
Score = 76.8 bits (41), Expect = 3e-13
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 25 AGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCTCAT 74
|||||||| |||| ||||||||||||||||||||||||||||||| ||||
Sbjct 676 AGCTTTTTCGGGTATGATCCGATTGACAAGCAATTCAAGGTATTGTTCAT 725
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 63.9 bits (34), Expect = 2e-09
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand=Plus/Plus
Query 172 CCTTTTAGAAAAGGGATATGCATCAATGGGGTTTTGTATTACTTTG-CTA 220
|||||| | |||| ||||||||||||||||||||||||||||| || |||
Sbjct 6 CCTTTTTGGAAAGAGATATGCATCAATGGGGTTTTGTATTACTCTGGCTA 55
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 62.1 bits (33), Expect = 7e-09
Identities = 153/207 (74%), Gaps = 24/207 (12%)
Strand=Plus/Plus
Query 25 AGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCTCATCAACAGTTTA 84
|||||||| |||||||| ||||||| |||||||| ||||| |||| || | | | |||
Sbjct 439 AGCTTTTTCGGGTTTGACCCGATTGGCAAGCAATACAAGGCATTG-TC--C-ATTGCTTA 494
Query 85 GT-TA-ATGAAAC-GGT--TCATCATATTCTGACATTAGAAGCTGGA-ATAATGAGGTGG 138
| | ||| | ||| |||| | || || ||||||| || |||| || ||| |||
Sbjct 495 -TCCATCTGATCCTGGTCGTCATAAAATACTTACATTAGGAGATGGAGAT-CTGACATGG 552
Query 139 AGGAAGATACAATATTGTCCGGTTACCTATAAGCCT--T-TT-A--GAAAAGGGATATGC 192
|| ||||| ||| | ||||| | |||| | | ||| | || | | | |||||||||
Sbjct 553 AGAAAGAT-CAA-A-TGTCCCG-TACC-ACGA-CCTGGTATTAAGGGTGATGGGATATGC 606
Query 193 ATCAATGGGGTTTTGTATTACTTTGCT 219
||||||||||||||||||| ||| |||
Sbjct 607 ATCAATGGGGTTTTGTATTTCTTAGCT 633
> AT5G38810.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:15540484-15541540 REVERSE LENGTH=780
Length=780
Score = 56.5 bits (30), Expect = 3e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 188 TATGCATCAATGGGGTTTTGTATTACTTTGCTA 220
||| |||||||||||||||||||||||||||||
Sbjct 389 TATCCATCAATGGGGTTTTGTATTACTTTGCTA 421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5