BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg336227 Length=708 Score E Sequences producing significant alignments: (Bits) Value AT1G33020.1 | Symbols: | F-box and associated interaction doma... 139 3e-32 AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-... 104 1e-21 AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 82.4 5e-15 AT1G47350.1 | Symbols: | F-box associated ubiquitination effec... 76.8 3e-13 AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 63.9 2e-09 AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 62.1 7e-09 AT5G38810.1 | Symbols: | F-box and associated interaction doma... 56.5 3e-07 > AT1G33020.1 | Symbols: | F-box and associated interaction domains-containing protein | chr1:11962746-11964832 FORWARD LENGTH=1647 Length=1647 Score = 139 bits (75), Expect = 3e-32 Identities = 171/214 (80%), Gaps = 20/214 (9%) Strand=Plus/Plus Query 25 AGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCTCATCAACAGTTTA 84 |||||||||||||||||||||||||||||||||||||||||||||| ||| || | | || Sbjct 463 AGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCGCATGAA-A-TATA 520 Query 85 GTTAA--TGAAAC-G--GTTCATCATATTCTGACATTAGAAGCTGG-AATAATGAGGTGG 138 | | || | | ||||| |||||||||||||||||| |||| || |||||||||| Sbjct 521 ATGATCGTGGTATTGTTGTTCACCATATTCTGACATTAGAACCTGGCAA-AATGAGGTGG 579 Query 139 AGGAAGATACAATATTGTCCGGTTA-CCTAT-AAGCCTTT-TAGAAAAGGGATATGCATC 195 || || || | || |||| ||| || || || ||||| | | || | ||||||| | Sbjct 580 AGAAAAATCCGAT---GTCCC-TTAGCCCATGAA-CCTTTCTGGGAA-GAGATATGCGCC 633 Query 196 AATGGGGTTTTGTATTACTTTGCT-AATCCAACT 228 |||||||||||||||||||| ||| || |||||| Sbjct 634 AATGGGGTTTTGTATTACTTAGCTGAA-CCAACT 666 > AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-11005444 REVERSE LENGTH=1203 Length=1203 Score = 104 bits (56), Expect = 1e-21 Identities = 160/207 (77%), Gaps = 20/207 (10%) Strand=Plus/Plus Query 28 TTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCTCATC-A-A--C-AGTT 82 ||||||||||||||||||||||||||||||||||||||||| || | | | | | || Sbjct 475 TTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTAATCC-CGATATTCGATTT 533 Query 83 TAGTTAA---TGAAACGGTTCATCATATTCTGACATTAGAAGCTGGAATAAT-GAGGTGG 138 | | ||| | |||||| |||||||||||| ||||||| ||||| || | | | ||||| Sbjct 534 T-GATAAACATCAAACGGATCATCATATTCTTACATTAGGAGCTGAAACAGTTG-GGTGG 591 Query 139 AGGAAGATACAATATTGTCCGGTTAC-CTATAAGCCTTTTAGAAAAGGGATA-T--GCAT 194 |||||||| |||| | || |||| |||| ||| ||| || || | | | |||| Sbjct 592 AGGAAGATCCAATCTC--CC--TTACGCTATCTTCCTCATAGTAATGGAACAATTTGCAT 647 Query 195 CAATGGGGTTTTGTATTACTTTGCTAA 221 ||||||| ||||||||||| | ||||| Sbjct 648 CAATGGGATTTTGTATTACCTAGCTAA 674 > AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899 FORWARD LENGTH=1068 Length=1068 Score = 82.4 bits (44), Expect = 5e-15 Identities = 104/131 (79%), Gaps = 12/131 (9%) Strand=Plus/Plus Query 89 ATGAAACGGTTCATCATATTCTGACATTA-GAAGCTGGAATAA--TGAGGTGGAGGAAGA 145 ||||| |||| ||||||||||||||||| ||| || ||| || ||||||||||| ||| Sbjct 305 ATGAATGGGTTTATCATATTCTGACATTAGGAA-CT-GAA-AATGTGAGGTGGAGGGAGA 361 Query 146 TACAATATTGTCCGGTTACCTATAAGCCT--TTTAGAAAAG-GGATATGCATCAATGGGG 202 | ||| ||||| || | ||| | ||| | |||||| ||||||||||||||||| Sbjct 362 T--TATA-TGTCCCTTTTCATATGATCCTCCTCGGGAAAAGCCGATATGCATCAATGGGG 418 Query 203 TTTTGTATTAC 213 ||||||||||| Sbjct 419 TTTTGTATTAC 429 > AT1G47350.1 | Symbols: | F-box associated ubiquitination effector family protein | chr1:17358447-17360722 REVERSE LENGTH=1587 Length=1587 Score = 76.8 bits (41), Expect = 3e-13 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 25 AGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCTCAT 74 |||||||| |||| ||||||||||||||||||||||||||||||| |||| Sbjct 676 AGCTTTTTCGGGTATGATCCGATTGACAAGCAATTCAAGGTATTGTTCAT 725 > AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | chr1:11026338-11026784 REVERSE LENGTH=447 Length=447 Score = 63.9 bits (34), Expect = 2e-09 Identities = 45/50 (90%), Gaps = 1/50 (2%) Strand=Plus/Plus Query 172 CCTTTTAGAAAAGGGATATGCATCAATGGGGTTTTGTATTACTTTG-CTA 220 |||||| | |||| ||||||||||||||||||||||||||||| || ||| Sbjct 6 CCTTTTTGGAAAGAGATATGCATCAATGGGGTTTTGTATTACTCTGGCTA 55 > AT2G02660.1 | Symbols: | F-box associated ubiquitination effector family protein | chr2:738504-739769 FORWARD LENGTH=1266 Length=1266 Score = 62.1 bits (33), Expect = 7e-09 Identities = 153/207 (74%), Gaps = 24/207 (12%) Strand=Plus/Plus Query 25 AGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCTCATCAACAGTTTA 84 |||||||| |||||||| ||||||| |||||||| ||||| |||| || | | | ||| Sbjct 439 AGCTTTTTCGGGTTTGACCCGATTGGCAAGCAATACAAGGCATTG-TC--C-ATTGCTTA 494 Query 85 GT-TA-ATGAAAC-GGT--TCATCATATTCTGACATTAGAAGCTGGA-ATAATGAGGTGG 138 | | ||| | ||| |||| | || || ||||||| || |||| || ||| ||| Sbjct 495 -TCCATCTGATCCTGGTCGTCATAAAATACTTACATTAGGAGATGGAGAT-CTGACATGG 552 Query 139 AGGAAGATACAATATTGTCCGGTTACCTATAAGCCT--T-TT-A--GAAAAGGGATATGC 192 || ||||| ||| | ||||| | |||| | | ||| | || | | | ||||||||| Sbjct 553 AGAAAGAT-CAA-A-TGTCCCG-TACC-ACGA-CCTGGTATTAAGGGTGATGGGATATGC 606 Query 193 ATCAATGGGGTTTTGTATTACTTTGCT 219 ||||||||||||||||||| ||| ||| Sbjct 607 ATCAATGGGGTTTTGTATTTCTTAGCT 633 > AT5G38810.1 | Symbols: | F-box and associated interaction domains-containing protein | chr5:15540484-15541540 REVERSE LENGTH=780 Length=780 Score = 56.5 bits (30), Expect = 3e-07 Identities = 32/33 (97%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 188 TATGCATCAATGGGGTTTTGTATTACTTTGCTA 220 ||| ||||||||||||||||||||||||||||| Sbjct 389 TATCCATCAATGGGGTTTTGTATTACTTTGCTA 421 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34309922401 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5