BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336232
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 699 0.0
AT1G30921.1 | Symbols: | pseudogene, hypothetical protein | ch... 320 1e-86
AT1G33020.1 | Symbols: | F-box and associated interaction doma... 154 1e-36
AT1G33010.1 | Symbols: | F-box and associated interaction doma... 148 7e-35
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 145 9e-34
AT5G52620.1 | Symbols: | F-box associated ubiquitination effec... 52.8 5e-06
AT3G23960.1 | Symbols: | F-box and associated interaction doma... 52.8 5e-06
AT2G16220.1 | Symbols: | F-box and associated interaction doma... 52.8 5e-06
AT1G20657.1 | Symbols: | Pseudogene of AT3G61340; F-box family... 52.8 5e-06
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 699 bits (378), Expect = 0.0
Identities = 562/647 (87%), Gaps = 28/647 (4%)
Strand=Plus/Plus
Query 250 GATGAATTGGTTTATCATATTCTGACATTAGGAACTGAAAATGTGAAGTGGAGGGAGATA 309
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 304 GATGAATGGGTTTATCATATTCTGACATTAGGAACTGAAAATGTGAGGTGGAGGGAGATT 363
Query 310 AAATTTCCCTTATTC-TCTGATCTTTCTTC-GG-AAA--TGATATGCATCAATGGTGTTT 364
| || |||||| ||| | ||||| || || || ||| ||||||||||||||| ||||
Sbjct 364 ATATGTCCCTT-TTCATATGATC-CTCCTCGGGAAAAGCCGATATGCATCAATGGGGTTT 421
Query 365 TGTATTACATAACTTTAGGTAGTCA-TA--AAAATATAGGTTGCTTTGATGTTAGGTCTG 421
|||||||||||| | | |||||| | || | ||||||||||||||||||||||||||
Sbjct 422 TGTATTACATAAGTGTCGGTAGTTATTATTCACTTATAGGTTGCTTTGATGTTAGGTCTG 481
Query 422 AGAAATTTAAGTTTTTATATGC-AAACCCAGATTACTTT-TATAATTGGTCTAGAAAATT 479
||||||| |||||||||||| | || |||||||| |||| | || ||||||||||||||
Sbjct 482 AGAAATTCAAGTTTTTATAT-CTAAGCCCAGATTGCTTTCCA-AACTGGTCTAGAAAATT 539
Query 480 GTTAAACTATAAGGGTAAATTAGGTGTGACTAAAATGGAAAATGATTATGAAGGTGGATT 539
| |||||||||||||||||||||||||||||| ||||| || |||||| | ||||||||
Sbjct 540 GATAAACTATAAGGGTAAATTAGGTGTGACTATAATGG--AA-GATTATCATGGTGGATT 596
Query 540 TCCCCTTAAGTTGCGTATGTGGGTTCTAGAGGATGTCGAGAAAGAGGAATGGACGACATA 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 597 TCCCCTTAAGTTGCGTATGTGGGTTCTAGAGGATGTCGAGAAAGAGGAATGGACGAGATA 656
Query 600 TTCCTACACTGTGAGGGCTGAGAATTTAA-TCAAGGATAATGACTATATTTGTGTTGTTG 658
| |||||||| ||||| |||||||| || || |||| ||||||||| | | ||||||||
Sbjct 657 TGCCTACACTTTGAGGCCTGAGAATA-AAGTCGAGGACAATGACTATGTATATGTTGTTG 715
Query 659 GGGCGACTGCTTCAGGTGAAATTGTTTTGGCGAAGTTGAATGCGTATAAACCGTTTTATG 718
|||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||
Sbjct 716 GGGCAACTGCTTCAGGTGAAATTGTTTTGACGAAACAGAATGCATATAAACCGTTTTATG 775
Query 719 TTTTCTACTTTAATCCCGAAAAGAACACTCTCCTAAGCGTTGAAATCCAAGGTGTTGGAA 778
|||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 776 TTTTCTACTTTAGTCCTGAAAGGAACACTCTCCTAAGCGTTGAAATCCAAGGTGTTGGA- 834
Query 779 AAGAGAAAGAAGGGTTCGATCATCATAGCGTTTACTACTTTGTAGACCATGTAGAAGATA 838
|| | ||| |||| ||||| || | |||||||||||||||||||||| || |||
Sbjct 835 --GA-A--GAATGGTTTTATCATAAT-G--TTTACTACTTTGTAGACCATGTCGAGGATC 886
Query 839 TTAAGTTTGATGTTATGAAGAAAACATATGCTGCAACATCGATAAGC 885
||| ||||||||||||||||| ||||||||||| |||||| | ||||
Sbjct 887 TTAGGTTTGATGTTATGAAGACAACATATGCTGGAACATCTAGAAGC 933
> AT1G30921.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11007112-11008238 REVERSE LENGTH=1127
Length=1127
Score = 320 bits (173), Expect = 1e-86
Identities = 318/386 (82%), Gaps = 18/386 (5%)
Strand=Plus/Plus
Query 475 AAATTGTTAAACTATAAGGGTAAATTAGGTGTGACTAAAATGGAAAATGATTATGAAGGT 534
|||||| ||||||||||||||||||||||| || | | |||| || |||||||| | |
Sbjct 749 AAATTGATAAACTATAAGGGTAAATTAGGTTTGGTTGATTTGGAGAAGGATTATGATGCT 808
Query 535 GGATTTCCCCTTAAGTTGCGTATGTGGGTTCTAGAGGATGTCGAGAAAGAGGAATGGACG 594
|||| || |||| ||| |||||| ||||||||||||||||||||||| ||||| || |
Sbjct 809 GGATATCTCCTTGGGTTACGTATGCAGGTTCTAGAGGATGTCGAGAAAGGGGAATAGAAG 868
Query 595 ACATATTCCTACACTGTGAGGGCTGA-GAATTTAATCAAG--GATAATGACTATATTTGT 651
| |||| ||||||||||||||||||| | | ||| ||| ||| || || |||
Sbjct 869 AAATATGCCTACACTGTGAGGGCTGATG-A--GAATAAAGTCTTTAACAACAATCTTTCC 925
Query 652 GTTGTTGGGGCGACTGCTTCAGGTGAAATTGTTTTGGCGAAG--TTGAATGCGTATAAAC 709
||||||||||| |||||||||||||||||||||||||||||| || | ||| || ||||
Sbjct 926 GTTGTTGGGGCAACTGCTTCAGGTGAAATTGTTTTGGCGAAGAATT-A-TGCATAGAAAC 983
Query 710 CGTTTTATGTTTTCTACTTTAATCCCGAAAAGAACACTCTCCTAAGCGTTGAAATCCAAG 769
|||||||||||||||| ||||||||||| | ||||||||||| ||| |||||||||||||
Sbjct 984 CGTTTTATGTTTTCTAATTTAATCCCGATAGGAACACTCTCCGAAGTGTTGAAATCCAAG 1043
Query 770 GTGTTGGAAAAGAGAAAGAAGGGTTCGATC-ATCATAGC-GTT--T-ACT-ACTTTGTAG 823
||||| || ||||| ||||| |||| || | |||||| | ||| | | | |||||||||
Sbjct 1044 GTGTTAGAGAAGAGGAAGAATGGTTTGA-CGATCATA-CAGTTCATTAATTACTTTGTAG 1101
Query 824 ACCATGTAGAAGATATTAAGTTTGAT 849
|||||||||| ||| ||| |||||||
Sbjct 1102 ACCATGTAGAGGATCTTAGGTTTGAT 1127
> AT1G33020.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11962746-11964832 FORWARD LENGTH=1647
Length=1647
Score = 154 bits (83), Expect = 1e-36
Identities = 589/816 (72%), Gaps = 103/816 (13%)
Strand=Plus/Plus
Query 111 TGTGATATGTAACCCTAGCACGGGACAATTTGCGATCTTACCACCTGACCTGACAACGTA 170
||||||||||||||||| ||||||||||| |||||||||| || |||| | || | |
Sbjct 396 TGTGATATGTAACCCTATCACGGGACAATATGCGATCTTA-CAACTGA--TAAC-A-TTC 450
Query 171 CA-GA-AACTTCG-GCGGCCTTTTGGGGTATGATCCGATTGGCAGGCAATTCAAGGTTTT 227
|| || || | | || |||| |||| ||||||||||| || |||||||||||| ||
Sbjct 451 CACGAGAA----GAGAAGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATT 506
Query 228 GGTC-CAT-AACCCTAAAATCGA-CGAT-GAATTG--GTTTATCATATTCTGACATTAGG 281
| | ||| || || ||| || || | | |||| ||| | ||||||||||||||| |
Sbjct 507 -G-CGCATGAA--ATATAAT-GATCG-TGGTATTGTTGTTCACCATATTCTGACATTA-G 559
Query 282 AA-CT-G-AAAATGTGAAGTGGAGGGAGATAAAATTTCCCTTATTCTC-TG-ATCTTTCT 336
|| || | |||| ||| |||||| | || || ||||||| | | || | |||||
Sbjct 560 AACCTGGCAAAA--TGAGGTGGAGAAAAATCCGATGTCCCTTA-GCCCATGAACCTTTC- 615
Query 337 TCGGAA-ATGATATGCATCAATGGTGTTTTGTATTAC--A--T-AA-C--TTTA-GGTA- 385
| |||| | ||||||| |||||| |||||||||||| | | || | | | || |
Sbjct 616 TGGGAAGA-GATATGCGCCAATGGGGTTTTGTATTACTTAGCTGAACCAACTGATGG-AG 673
Query 386 -GTCATAAAAAT-ATAGGTTGCTTTGATGTTAGGTCTGAGAAATTTAAGTTTTTATATGC 443
||| | | | ||| |||||||||||||| ||||||||||||| || ||||| ||
Sbjct 674 GGTC-T-TATGTGATATGTTGCTTTGATGTTCGGTCTGAGAAATTCAA--ATTTAT-TG- 727
Query 444 AAACCCAGATTACTTTTATAATTGGTCTAGAAAATTGTTAAACTATAAGGGTAAATTAGG 503
|| || | | |||| | ||| |||| ||||| | || |||||||||||| ||||
Sbjct 728 --ACGCAAAATGCTTTGGTGATTTCTCTATTCAATTGATCAATTATAAGGGTAAACTAGG 785
Query 504 TGTGACTAAAATGGAA-AATGATTA-TGAAGGTGG--A-TTTCCCCTTAAGTTGCGTATG 558
|| || | | ||||| |||| || | | ||| | | || || ||||| ||||
Sbjct 786 TGGGA-TTAGTTGGAAGTATGA-TACCGTCGATGGAAAGCGTACCGTTGAGTTGTATATG 843
Query 559 TGGGTTCTAGAGGATGTCGAGAAAGAGGAATGGACGACATA-TTCCTACACTGTGAGGGC 617
|||||||||||||||||||||||| || ||||| | | ||| | |||| || || ||
Sbjct 844 TGGGTTCTAGAGGATGTCGAGAAACAGAAATGGTCCAAATACGT-CTACCCTTTGCCGG- 901
Query 618 TGAGAATTTAATCAAGGATAATGACTATATTTGTGTTGTTGGGGCGACTGCTTCAGGTGA 677
| ||| | || | | | | || || |||| || | ||| ||| ||||||
Sbjct 902 -G-GAA--T--TC----CT-ACCA-T-TA-TTCCGTTGCAGGAGTGACAGCTAAAGGTGA 947
Query 678 AATTG-TTTTGGCGAAG--TTGAATGCGTATAAACCGTTTTATGTTTTCTACTTTAATCC 734
|||| ||||| | ||| || | | | |||||||||||||||||||||| | |||||
Sbjct 948 TATTGTTTTTGTC-AAGACTT--ACACATCTAAACCGTTTTATGTTTTCTACGTAAATCC 1004
Query 735 CGAAAAGAACACTCTCCTAA-GCGTTGAAATCCAAGGTGTTGGAAAAGAGAAAGAAGGGT 793
||||||||| ||| ||| || |||||||||||| | ||| | | | |||| ||
Sbjct 1005 CGAAAAGAAAACTTTCC-AACGCGTTGAAATCC-A-----TGG--TA-ACCATGAAGTGT 1054
Query 794 TCGATCA-TCAT-AGC--GTTTACTACTTTGTAGACCATGTAGAAGATATTAAGTTTGAT 849
| || || | || | | |||||| ||| |||||||||||||| ||| || ||||||||
Sbjct 1055 TTGA-CACTAATAATCTAGTTTACGCCTTCGTAGACCATGTAGAGGATCTTCAGTTTGAT 1113
Query 850 GTTATGAAGAAAACATATGCTGCAACATCGATAAGC 885
||||||||||||||||||||||||| | | ||||||
Sbjct 1114 GTTATGAAGAAAACATATGCTGCAAAACCTATAAGC 1149
> AT1G33010.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11959287-11960591 FORWARD LENGTH=1086
Length=1086
Score = 148 bits (80), Expect = 7e-35
Identities = 313/419 (75%), Gaps = 42/419 (10%)
Strand=Plus/Plus
Query 476 AATTGTTAAACTATAAGGGTAAATTAGGTGTGACTAAAATGGAAAATGATTATGAAGGTG 535
||||| |||||||||||||||||||||||| || | | ||| ||| || ||| ||||
Sbjct 539 AATTGATAAACTATAAGGGTAAATTAGGTGGGA-TTAGTTGG--AATAATCATG-AGGTT 594
Query 536 GATTTCCCCTTAAGTTG-CGTATGTGGGTTCTAGAGGATGTCGAGAAAGAGGAATGGACG 594
| |||| || ||||| | ||||||||||||||| |||||||||||| | |||||| |
Sbjct 595 G--CTCCCGTTGAGTTGTC-TATGTGGGTTCTAGAAGATGTCGAGAAACAAGAATGGTCC 651
Query 595 ACATAT-TCCTACACTGTGAGGGCTGAGAATTTAATCAAGGATAATGACTATATTTG--T 651
| | || | ||||| | | | || ||||| || || |||| || | |||
Sbjct 652 AAAAATGT-CTACA-T-T-TTGCCTAAGAATGTAGTC---CCTAATAAC--TGGTTGCAC 702
Query 652 GTTGTTGGGGCGACTGCTT-CAGGTGAAATTGTTTTGGC-GAAGTTGAATGCGTAT--AA 707
| || ||| | ||||| || |||||| |||||||| | || | || | |||| ||
Sbjct 703 GCTGCTGGAGTGACTG-TTGAAGGTGATATTGTTTTCTCGGAGGCTG--T-AGTATCCAA 758
Query 708 ACCGTTTTATGTTTTCTACTTTAATCCCGAAAAGAACACTCTCCTA-AGCGTTGAAATCC 766
|||||| |||||||||||||||||||||||||||||||||||| | | |||||||| ||
Sbjct 759 TCCGTTTGATGTTTTCTACTTTAATCCCGAAAAGAACACTCTCCAACA-CGTTGAAACCC 817
Query 767 AAGGTGTTGGAA--AAGAGAAAGAAGGGTTCGATCATCATAGCGTTTAC-TACTTTGTAG 823
| ||| | ||| | || | | || ||| ||| || || | ||||||||
Sbjct 818 AT--TGTAACCATGAAGTGTTTGACGA-TGAGA--ATC-TAG--TTAACAT-CTTTGTAG 868
Query 824 ACCATGTAGAAGATATTAAGTTTGATGTTATGAAGAAAACATATGCTGCAACATCGATA 882
|||||||||| ||| |||||||||||||||||||| |||||||||||||||||| |||
Sbjct 869 ACCATGTAGAGGATCTTAAGTTTGATGTTATGAAGCCAACATATGCTGCAACATCTATA 927
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 145 bits (78), Expect = 9e-34
Identities = 271/358 (76%), Gaps = 37/358 (10%)
Strand=Plus/Plus
Query 406 TTTGATGTTAGGTCTGAGAAATTTAAGTTTTTAT--ATGCAAACCCAGATTACTTTTATA 463
|||||| |||||||||||||||| || |||||| |||| | | || || | ||| |
Sbjct 88 TTTGATTTTAGGTCTGAGAAATTCAA--TTTTATCAATGC--ATCAAGCTT-CCTTT-T- 140
Query 464 ATTGGTCTAGAAAATTGTTAAACTATAAGGGTAAATTAGGTGTGACTAAAATGGAAAATG 523
|| |||| ||||||| ||||||| || ||||||||||||| || | | ||| ||
Sbjct 141 -TTCATCTACAAAATTGATAAACTACAAAGGTAAATTAGGTGGGATTGATTTGGCGTATA 199
Query 524 ATTATGAAGGTGGATTTCCCCTTAAGTTGCGTATGTGGGTTCTAGAGGATGTCGAGAAAG 583
|| ||| |||| || |||| || |||| ||||||||||||||||||||||||||||||
Sbjct 200 ATCATGGTGGTGTATATCCCGTTGAGTTACGTATGTGGGTTCTAGAGGATGTCGAGAAAC 259
Query 584 AGGAATGGACGA--CATATTCCTACACTGTGA-GG-G-C--TGAGAATTTAATCAAG-GA 635
| |||||| ||| ||| || ||| || || || | | | |||||| | || | |
Sbjct 260 ACGAATGGTCGAGACATGTT--TACTCTTTGCCGGAGACCATT-GAATTTCAGCA-GTG- 314
Query 636 TAA-TGACTATATTTGTGTTGTTGGGGCGACTGCT-TCAGGTGAAATTGTTTTGGCGAAG 693
||| | || ||||||| |||| |||| || |||| | ||||||||||||||| || ||
Sbjct 315 TAACT-ACAATATTTGCGTTGGTGGGATGAATGCTAT-AGGTGAAATTGTTTTTTCGGAG 372
Query 694 T--TG-A-ATGCGTA--T--AAACCGTTTTATGTTTTCTACTTTAATCCCGAAAAGAA 743
| | | || | || | ||||||||||||||||||||||| ||||||||||||||
Sbjct 373 TCATATATAT-C-TACATCCAAACCGTTTTATGTTTTCTACTTCAATCCCGAAAAGAA 428
> AT5G52620.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr5:21348554-21349681 REVERSE LENGTH=1128
Length=1128
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 112 GTGATATGTAACCCTAGCACGGGACAAT 139
||||||||||||||||||||||||||||
Sbjct 376 GTGATATGTAACCCTAGCACGGGACAAT 403
> AT3G23960.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8657736-8658944 FORWARD LENGTH=1209
Length=1209
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 345 GATATGCATCAATGGTGTTTTGTATTAC 372
||||||||||||||||||||||||||||
Sbjct 705 GATATGCATCAATGGTGTTTTGTATTAC 732
> AT2G16220.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:7030155-7031378 REVERSE LENGTH=1224
Length=1224
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 345 GATATGCATCAATGGTGTTTTGTATTAC 372
||||||||||||||||||||||||||||
Sbjct 609 GATATGCATCAATGGTGTTTTGTATTAC 636
> AT1G20657.1 | Symbols: | Pseudogene of AT3G61340; F-box family
protein | chr1:7161890-7163076 REVERSE LENGTH=1187
Length=1187
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 345 GATATGCATCAATGGTGTTTTGTATTAC 372
||||||||||||||||||||||||||||
Sbjct 677 GATATGCATCAATGGTGTTTTGTATTAC 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5