BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336233
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 411 7e-114
AT1G31090.1 | Symbols: | F-box family protein | chr1:11094407-... 292 3e-78
AT1G30921.1 | Symbols: | pseudogene, hypothetical protein | ch... 169 5e-41
AT1G33020.1 | Symbols: | F-box and associated interaction doma... 161 8e-39
AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-1101... 154 1e-36
AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-... 135 5e-31
AT5G42430.1 | Symbols: | F-box and associated interaction doma... 126 3e-28
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 411 bits (222), Expect = 7e-114
Identities = 310/350 (89%), Gaps = 15/350 (4%)
Strand=Plus/Plus
Query 494 GTGAAATTGTTTTGGCG-AAGGGAAATGTATACAATCCGTTTTATGTTTACTACTTTAAT 552
|||||||||||||| || || | |||| ||| || ||||||||||||| |||||||| |
Sbjct 731 GTGAAATTGTTTTGACGAAACAG-AATGCATATAAACCGTTTTATGTTTTCTACTTTAGT 789
Query 553 CCCGaaaaaaaCACTCTCCTAAGTGTTGAAATCCAAGGTGTTAGAGAAGGGGAAGACTGG 612
|| |||| |||||||||||||| |||||||||||||||||| | | | ||||| |||
Sbjct 790 CCTGAAAGGAACACTCTCCTAAGCGTTGAAATCCAAGGTGTT-G-G-A---GAAGAATGG 843
Query 613 TCTAACATTCATAGA-GTTTACTACTTTGTAGATCATGTAGAGGGTCTTCA-GTTTGATG 670
| | | ||||| | ||||||||||||||||| ||||| |||| |||| | ||||||||
Sbjct 844 T-T-TTA-TCATA-ATGTTTACTACTTTGTAGACCATGTCGAGGATCTT-AGGTTTGATG 898
Query 671 TTATGAAGACAACATATGCTGCAACATCTATAAGCCCACTAGAACAGAGCACATCAACAT 730
||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||||
Sbjct 899 TTATGAAGACAACATATGCTGGAACATCTAGAAGCCCACCAAAACAGAGCACATCAACAT 958
Query 731 CATCTAGAGAAGATCATCAAGTGAGGACCCTTGCTCACCAGAAAGAAGATCGTCTTACGT 790
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CATCTAGAGAAGATCATGAAGTGAGGACCCTTGCTCACCAGAAAGAAGATCGTCTTACGT 1018
Query 791 TTGAGAGTGTTAACAAATTTGATGCTCTGAGTCTTTTAGAAGATGATTAA 840
|||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1019 TTGAGAGTGTTAACCAATTTGATGCTCTGCGTCTTTTAGAAGATGATTAA 1068
Score = 220 bits (119), Expect = 1e-56
Identities = 254/317 (80%), Gaps = 18/317 (6%)
Strand=Plus/Plus
Query 185 AATTGGTTTATCATATTGTGACATTAGGAACTGAAAATTTGAGGTGGAGGGAGATCATAT 244
||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||
Sbjct 308 AATGGGTTTATCATATTCTGACATTAGGAACTGAAAATGTGAGGTGGAGGGAGATTATAT 367
Query 245 GTCCCTTAACCTATGGTTATTGTTGGG--AA-CATATATGCATCAATGGGGTTTTGTATT 301
||||||| | |||| | | | ||| || | |||||||||||||||||||||||||
Sbjct 368 GTCCCTTTTCATATGATCCTCCTCGGGAAAAGCCGATATGCATCAATGGGGTTTTGTATT 427
Query 302 ACCT-AGCTTTTGACCCTAATAAAGAGCATGATATGATAGGTTGCTTTGATGTTAGGTCT 360
|| | || || | || | | | | | | ||||||||||||||||||||||||
Sbjct 428 ACATAAG----TGTCGGTAGTTATTA--TTCA-CTTATAGGTTGCTTTGATGTTAGGTCT 480
Query 361 GAGAAAGTCAAGTCTCTAAATTTAAACCCAGACTGCTTTCGTAATTGGTCTACTAAATTG 420
|||||| |||||| | || || ||| |||||| ||||||| || ||||||| ||||||
Sbjct 481 GAGAAATTCAAGTTTTTATATCTAAGCCCAGATTGCTTTCCAAACTGGTCTAGAAAATTG 540
Query 421 ATAAACTATAAGGGTATATTAGGTGTTA-T-TAATTTGGAGGATGATTGTGATGGTAGAT 478
|||||||||||||||| ||||||||| | | |||| ||| | |||| | ||||| |||
Sbjct 541 ATAAACTATAAGGGTAAATTAGGTGTGACTATAAT--GGA--A-GATTATCATGGTGGAT 595
Query 479 TTCCCCTTAAGTTACGT 495
||||||||||||| |||
Sbjct 596 TTCCCCTTAAGTTGCGT 612
> AT1G31090.1 | Symbols: | F-box family protein | chr1:11094407-11095649
FORWARD LENGTH=936
Length=936
Score = 292 bits (158), Expect = 3e-78
Identities = 233/267 (87%), Gaps = 14/267 (5%)
Strand=Plus/Plus
Query 497 AAATTGTTTTGGCGAAGGGA-AATGTATACAATCCGTTTTATGT-TTACTACTTTAATCC 554
|||||||||||||| ||| | || | ||| || ||||||||||| || |||||||||||
Sbjct 659 AAATTGTTTTGGCG-AGGAATAAGGCATATAAACCGTTTTATGTGTT-TTACTTTAATCC 716
Query 555 CGaaaaaaaCACTCTCCTAAGTGTTGAAATCCAAGGTGTTAGAGAAGGGGAAGACTGGTC 614
|||||| | |||||| | ||||||||||||||||||||||||||||| ||||| |||
Sbjct 717 CGAAAAGAGCACTCTACAAAGTGTTGAAATCCAAGGTGTTAGAGAAGAAGAAGATTGG-- 774
Query 615 TAACATTCATAGAGTTTACTACTTTGTAGATCATGTAGAGGGTCTTCA-GTTTGATGTTA 673
| ||||||||||||||||||||||||| ||||| |||| |||| | |||||||||||
Sbjct 775 T----TTCATAGAGTTTACTACTTTGTAGACCATGTCGAGGATCTT-AGGTTTGATGTTA 829
Query 674 TGAAGACAACATATGCTGCAACATCTATAAGCCCA-CTAGAACAGAGCACATCAACATCA 732
||||||||||||||||||||||||| ||||| ||| | |||||||| |||||||||||||
Sbjct 830 TGAAGACAACATATGCTGCAACATCGATAAGACCAGC-AGAACAGAACACATCAACATCA 888
Query 733 TCTAGAGAAGATCATCAAGTGAGGACC 759
|||||||||||||||| ||||||||||
Sbjct 889 TCTAGAGAAGATCATCTAGTGAGGACC 915
> AT1G30921.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11007112-11008238 REVERSE LENGTH=1127
Length=1127
Score = 169 bits (91), Expect = 5e-41
Identities = 155/184 (84%), Gaps = 12/184 (7%)
Strand=Plus/Plus
Query 494 GTGAAATTGTTTTGGCGAAGGGAA--ATGTATACAATCCGTTTTATGTTTACTACTTTAA 551
||||||||||||||||||| ||| ||| ||| || ||||||||||||| ||| |||||
Sbjct 948 GTGAAATTGTTTTGGCGAA--GAATTATGCATAGAAACCGTTTTATGTTTTCTAATTTAA 1005
Query 552 TCCCGaaaaaaaCACTCTCCTAAGTGTTGAAATCCAAGGTGTTAGAGAAGGGGAAGACTG 611
|||||| | |||||||||| ||||||||||||||||||||||||||||| |||||| ||
Sbjct 1006 TCCCGATAGGAACACTCTCCGAAGTGTTGAAATCCAAGGTGTTAGAGAAGAGGAAGAATG 1065
Query 612 GTCTAAC-ATTCATAGAGTT--T-ACT-ACTTTGTAGATCATGTAGAGGGTCTTCAG-TT 665
|| | || || |||| |||| | | | |||||||||| |||||||||| |||| || ||
Sbjct 1066 GTTTGACGAT-CATACAGTTCATTAATTACTTTGTAGACCATGTAGAGGATCTT-AGGTT 1123
Query 666 TGAT 669
||||
Sbjct 1124 TGAT 1127
> AT1G33020.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11962746-11964832 FORWARD LENGTH=1647
Length=1647
Score = 161 bits (87), Expect = 8e-39
Identities = 335/447 (75%), Gaps = 48/447 (11%)
Strand=Plus/Plus
Query 34 CGTGTGTTATGTGACCCTAGCACGGGACAATATGCGATCTTACCACCTGACATGAGAACA 93
|||||| ||||| |||||| |||||||||||||||||||||| || || ||| |||
Sbjct 394 CGTGTGATATGTAACCCTATCACGGGACAATATGCGATCTTA-CA----AC-TGATAAC- 446
Query 94 ACGAACAAC-AGTAACTACCATGACTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAA 152
| | || || || | | | ||||||||||||||||||||||||||||||||||||
Sbjct 447 A--TTCCACGAG-AA-GA-GAAG-CTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAA 500
Query 153 GGTTTTG-GTCTTTAACCATACA-G-TCGATGACAAATTGGT-TT-ATCATATTGTGACA 207
||| ||| | | | || ||| | | ||| || | ||| | || | |||||| |||||
Sbjct 501 GGTATTGCG-CATGAAATATA-ATGATCG-TGGTA--TTGTTGTTCACCATATTCTGACA 555
Query 208 TTAGGAAC-TG--AAAATTTGAGGTGGAGGGAGATCATATGTCCCTTAACCTATGGTTAT 264
|||| ||| || ||||| ||||||||| | ||| |||||||||| || ||| |
Sbjct 556 TTAG-AACCTGGCAAAAT--GAGGTGGAGAAAAATCCGATGTCCCTTAGCCCATGAACCT 612
Query 265 TGT-TGGGAACATATATGCATCAATGGGGTTTTGTATTACCTAGCTTTTGA-CC--CTAA 320
| | |||||| | |||||| ||||||||||||||||||| ||||| || || || |
Sbjct 613 T-TCTGGGAAGAGATATGCGCCAATGGGGTTTTGTATTACTTAGCT---GAACCAACTGA 668
Query 321 TAAAGAG-CATGATATGATAGGTTGCTTTGATGTTAGGTCTGAGAAAGTCAAGTCTCTAA 379
| || | | | || ||||| |||||||||||||| ||||||||||| |||| | | ||
Sbjct 669 TGGAGGGTCTT-ATGTGATATGTTGCTTTGATGTTCGGTCTGAGAAATTCAAAT-T-TA- 724
Query 380 ATTTAAACCCAGACTGCTTTCGTAATTGGTCTACTAAATTGATAAACTATAAGGGTATAT 439
|| | | || | |||||| || ||| |||| | ||||||| || |||||||||| |
Sbjct 725 -TTGA--CGCAAAATGCTTTGGTGATTTCTCTATTCAATTGATCAATTATAAGGGTAAAC 781
Query 440 TAGGTGTTATTAATTTGGAGG-ATGAT 465
|||||| |||| || ||| | |||||
Sbjct 782 TAGGTGGGATTAGTT-GGAAGTATGAT 807
> AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-11011792
REVERSE LENGTH=1125
Length=1125
Score = 154 bits (83), Expect = 1e-36
Identities = 146/176 (83%), Gaps = 6/176 (3%)
Strand=Plus/Plus
Query 494 GTGAAATTGTTTTGGCGAAGGGAAATGTATACAATCCGTTTTATGT-TTACTACTTTAAT 552
|||| |||||||||| ||| ||||| || ||| ||||||||||| || ||||||||||
Sbjct 938 GTGATATTGTTTTGGTGAAAACAAATGCATGCAAACCGTTTTATGTGTT-CTACTTTAAT 996
Query 553 CCCGaaaaaaaCACTCTCCTAAGTGTTGAAATCCAAGGTGTTAGAGAAGGGGA-AGACTG 611
|||| || ||||||||||||||||||||||||||||||||| |||||| | | | ||
Sbjct 997 CCCGGAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTGTTGGAGAAGACCACAAA-TG 1055
Query 612 G-TCTAACATTCATAGAGTTTACTACTTTGTAGATCATGTAGAGGGTCTTCAGTTT 666
|| ||| |||||| ||||| | ||||||||| |||||||||| ||||||||||
Sbjct 1056 CCTC-AACTTTCATACAGTTTGCGCCTTTGTAGACCATGTAGAGGATCTTCAGTTT 1110
> AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-11005444
REVERSE LENGTH=1203
Length=1203
Score = 135 bits (73), Expect = 5e-31
Identities = 298/400 (75%), Gaps = 42/400 (11%)
Strand=Plus/Plus
Query 118 TTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTTTTGGTCTTTAACCATAC-AGT 176
|||||||||||||||||||||||||||||||||||||| || || | || | | |
Sbjct 475 TTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTAATCCCGAT--ATTCGATT 532
Query 177 C-GATGA-CA--AATTGGTTTATCATATTGTGACATTAGGAACTGAAA-ATTTGAGGTGG 231
||| | || || || | |||||||| | ||||||||| |||||| | ||| |||||
Sbjct 533 TTGATAAACATCAAACGGATCATCATATTCTTACATTAGGAGCTGAAACAGTTG-GGTGG 591
Query 232 AGGGAGATC-ATATGTCCCTTAAC-CTATGGT--T-ATTGT--TGGGAACATATATGCAT 284
||| ||||| | || ||||||| | |||| | | || || ||| |||| || |||||
Sbjct 592 AGGAAGATCCA-ATCTCCCTTA-CGCTATCTTCCTCATAGTAATGG-AACA-ATTTGCAT 647
Query 285 CAATGGGGTTTTGTATTACCTAGCTTTTGACCCTAATAAAG-A--GCATGATA-TGA--T 338
||||||| ||||||||||||||||| | |||| | | | | || | | || |
Sbjct 648 CAATGGGATTTTGTATTACCTAGCTAAA-AT--TAATTATGCAATGGATAAAAATGTGCT 704
Query 339 AGGTTGCTTTGATGTTAGGTCTGAGAAAGTCAAGTCTCTAAAT-TTAAACCCAGACTGCT 397
|| |||||||||||||||||||||||| | || |||| | |||| | || ||||||
Sbjct 705 AGTTTGCTTTGATGTTAGGTCTGAGAATTTTGTGTTTCTACGTCTTAA-CACATACTGCT 763
Query 398 TTCGTAATTGGTCTACTAAATTGATAAACTATAAGGGTATATTAGGTGTTATTAATTTGG 457
| | | ||||||||||| ||||||||||||||| |||||| | |||||| |
Sbjct 764 --C-T--T----CTACTAAATTGGTAAACTATAAGGGTAAATTAGGCATGATTAATCAAG 814
Query 458 AGGATGATTG-TGATGGTAGATTTCCCCTTAAGTTACGTG 496
|| ||| ||| ||||||| | |||||||| |||||| |||
Sbjct 815 AGTATG-TTGATGATGGTGGTTTTCCCCTAAAGTTAAGTG 853
> AT5G42430.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:16971312-16972499 REVERSE LENGTH=1188
Length=1188
Score = 126 bits (68), Expect = 3e-28
Identities = 95/108 (88%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 494 GTGAAATTGTTTTGGCGAAGGGAAATGTATACAATCCGTTTTATGT-TTACTACTTTAAT 552
|||||||||||||||||||| ||| |||| || ||||||||||| || ||||||||||
Sbjct 947 GTGAAATTGTTTTGGCGAAGAAAAAGGTATGTAAGCCGTTTTATGTCTT-CTACTTTAAT 1005
Query 553 CCCGaaaaaaaCACTCTCCTAAGTGTTGAAATCCAAGGTGTTAGAGAA 600
| ||||| |||||||||||||||||||||||||||||| || |||||
Sbjct 1006 CTCGAAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTTTTGGAGAA 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5