BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336237
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 518 5e-146
AT1G30921.1 | Symbols: | pseudogene, hypothetical protein | ch... 261 9e-69
AT1G67130.1 | Symbols: | F-box family protein | chr1:25099262-... 113 3e-24
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 518 bits (280), Expect = 5e-146
Identities = 610/760 (80%), Gaps = 60/760 (8%)
Strand=Plus/Plus
Query 167 GTAGAGTCGATGATGAATTGGTTTATCAGATTCTGATATTAGGAACTGAAAATATGAAGT 226
||||||| || ||||||| ||||||||| ||||||| |||||||||||||||| ||| ||
Sbjct 293 GTAGAGTTGAGGATGAATGGGTTTATCATATTCTGACATTAGGAACTGAAAATGTGAGGT 352
Query 227 GGAGGGAGATCATATGTCCCTTAACCTATGGACCCTATGGTTATCGTTGG-GAA-CATAT 284
|||||||||| ||||||||||| | ||| || || | ||| || || | ||
Sbjct 353 GGAGGGAGATTATATGTCCCTTTTCATAT-GATCC-----TCCTCG--GGAAAAGCCGAT 404
Query 285 ATGCATCAATGGGGTTTTGTATTACAT-AGCTGAT-GATCCTGATGAAGAGCATGATATG 342
||||||||||||||||||||||||||| || || | | | | || | || | |
Sbjct 405 ATGCATCAATGGGGTTTTGTATTACATAAG-TG-TCGGTAGTTAT-TA-TTCA--CT-T- 456
Query 343 ATAGGTTGTTTTGATGTTAGGTTTGAGAAATTCAAATTTGTACATCT-AGCCCCATACTG 401
|||||||| ||||||||||||| |||||||||||| ||| || |||| || |||| | ||
Sbjct 457 ATAGGTTGCTTTGATGTTAGGTCTGAGAAATTCAAGTTTTTATATCTAAG-CCCAGATTG 515
Query 402 CTTACCTAATTGGTCTACTAAATTGATAAACTATAAAGGTAAATTAGGTGTGATTAATTT 461
||| || || ||||||| ||||||||||||||||| |||||||||||||||| | | |
Sbjct 516 CTTTCCAAACTGGTCTAGAAAATTGATAAACTATAAGGGTAAATTAGGTGTGACT-A--T 572
Query 462 AGA-GGATGATTATGATGATGGTGGATTTTCCCTTAAGATAAGTATGTGGGTTCTAGAGA 520
| | ||| || | | || ||||||||||| |||||||| | |||||||||||||||||
Sbjct 573 A-ATGGAAGA-T-T-ATCATGGTGGATTTCCCCTTAAGTTGCGTATGTGGGTTCTAGAGG 628
Query 521 ATGTCGAGAAACATGAATGGACTACATATGCCTACACATTGAGGGCTGAGAATAAAGTCG 580
||||||||||| | |||||||| | |||||||||||| |||||| |||||||||||||||
Sbjct 629 ATGTCGAGAAAGAGGAATGGACGAGATATGCCTACACTTTGAGGCCTGAGAATAAAGTCG 688
Query 581 TTAAGGTTAGTCAAAATCTGTCCGTTATTGGAGTGACTGGTTCGGGTGACATTGTTTTGG 640
||| | | | || | | ||| |||| | |||| ||| ||||| |||||||||
Sbjct 689 ---AGGACAATGACTATGTATATGTTGTTGGGGCAACTGCTTCAGGTGAAATTGTTTTGA 745
Query 641 CGAACCATAATTTATATAAACCGATTTATGTTTTCTACTTTAATCCAGAAAGGAACACTC 700
|||| || ||| |||||||||| |||||||||||||||||| ||| |||||||||||||
Sbjct 746 CGAAACAGAATGCATATAAACCGTTTTATGTTTTCTACTTTAGTCCTGAAAGGAACACTC 805
Query 701 TCCTATGTGTTGAAATCCAAGGTGTTAGGGAAGAGGAAGAATGGTTTAAAAATCATAAAG 760
||||| | |||||||||||||||||| | || |||||||||||| ||||||| |
Sbjct 806 TCCTAAGCGTTGAAATCCAAGGTGTT---G--GA-GAAGAATGGTTT---TATCATAATG 856
Query 761 TTTACTGCTTTGTAAACCATGTAGAGGATCTTAGATTTGATGTTATGAAGACAAC--AT- 817
|||||| ||||||| ||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 857 TTTACTACTTTGTAGACCATGTCGAGGATCTTAGGTTTGATGTTATGAAGACAACATATG 916
Query 818 CT-----A--T--AAGCCCACCAGAACAGAGCACATCAACATCATCTAGAGAAGCAGAAG 868
|| | | |||||||||| |||||||||||||||||||||||||||||| |
Sbjct 917 CTGGAACATCTAGAAGCCCACCAAAACAGAGCACATCAACATCATCTAGAGAAG-A---- 971
Query 869 CTCATCAAGTGAGGACCGTTGCTCACCTGAAACAAGATCG 908
|||| ||||||||||| ||||||||| |||| |||||||
Sbjct 972 -TCATGAAGTGAGGACCCTTGCTCACCAGAAAGAAGATCG 1010
> AT1G30921.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11007112-11008238 REVERSE LENGTH=1127
Length=1127
Score = 261 bits (141), Expect = 9e-69
Identities = 221/259 (85%), Gaps = 8/259 (3%)
Strand=Plus/Plus
Query 6 GATCTCAAACGAGAATGACGATGTAGTGCGTATGATATGTAACCCTAGCACGGGACAGTA 65
||||||||| ||| ||||||| ||||||| ||||||||||||||||||| |||| ||
Sbjct 409 GATCTCAAAGGAGTGGGACGATGAAGTGCGTGCGATATGTAACCCTAGCACGAGACAATA 468
Query 66 TGCGATCTTACCACCTGACTTGAGAACAGGGTACCAAGAAGTA-GG-CGGCTTTTTAGGG 123
||||||||||||||||||| | |||||| ||||||| || | || | ||||| |||
Sbjct 469 TGCGATCTTACCACCTGACCTCAGAACAACGTACCAA-AACTTCGGTCCCCTTTT-AGGA 526
Query 124 TTTGATCCGATTGGCAAGCAATTCAAGGTTTTGGTCTATAAAC-GTAGAGTCG-ATGATG 181
|||||||||||||||||||||||||||||| | |||| | ||| ||||||||| | |||
Sbjct 527 TTTGATCCGATTGGCAAGCAATTCAAGGTTCTAGTCT-TCAACTGTAGAGTCGGAA-ATG 584
Query 182 AATTGGTTTATCAGATTCTGATATTAGGAACTGAAAATATGAAGTGGAGGGAGATCATAT 241
||||||||||||| ||| ||| |||||||||||||||| ||| |||||| ||||||||||
Sbjct 585 AATTGGTTTATCATATTTTGACATTAGGAACTGAAAATGTGAGGTGGAGAGAGATCATAT 644
Query 242 GTCCCTTAACCTATGGACC 260
||||||| ||||||| |||
Sbjct 645 GTCCCTTTACCTATGAACC 663
> AT1G67130.1 | Symbols: | F-box family protein | chr1:25099262-25100625
REVERSE LENGTH=1176
Length=1176
Score = 113 bits (61), Expect = 3e-24
Identities = 207/271 (76%), Gaps = 35/271 (13%)
Strand=Plus/Plus
Query 121 GGGTTTGATCCGATTGGCAAGCAATTCAAGGTTTTGG-TCTATAAACGTAGAGTCGATGA 179
|||||||| |||||||||||||||||||||||||||| ||| | ||| | || | ||
Sbjct 376 GGGTTTGACCCGATTGGCAAGCAATTCAAGGTTTTGGTTCT-T-AAC----ATTCTA-GA 428
Query 180 TGAATTGGTTTATCAGATTCTGATATTAGGAACTGAAAAT-ATGAAGTGGAGGGAG-AT- 236
|| | |||| ||||||| ||||||||| |||||| || ||||||| |||| ||
Sbjct 429 -CAA-T-CATTAT---ATTCTGACATTAGGAACAGAAAATGAT-AAGTGGA-GGAGTATC 480
Query 237 CATATGTCCCTTAACCTATGGACCCTATGGTTATCGTTGG-GAA--CATATATGCATCAA 293
|| | || |||||| ||| | ||| | | | | || || | |||||||| ||
Sbjct 481 CA-AAGTTCCTTAAGGTATCG-TCCT-T-G---T-G--GGCAAAGCCCGATATGCATTAA 530
Query 294 TGGGGTTTTGTATTACATAGCTGATGATCCTGATGA-AG--AGCATGATATGATAGGTTG 350
||| |||||||||||||||||| | ||| | | || || | ||||| ||||||||||
Sbjct 531 TGGAGTTTTGTATTACATAGCTTACGATACACAGGACAGCTCGAATGATGTGATAGGTTG 590
Query 351 TTTTGATGTTAGGTTTGAGAAATTCAAATTT 381
||||||||||||||||||||||||||| |||
Sbjct 591 TTTTGATGTTAGGTTTGAGAAATTCAAGTTT 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5