BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336243
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31120.1 | Symbols: KUP10 | K+ uptake permease 10 | chr1:111... 1520 0.0
AT2G35060.2 | Symbols: KUP11 | K+ uptake permease 11 | chr2:147... 948 0.0
> AT1G31120.1 | Symbols: KUP10 | K+ uptake permease 10 | chr1:11104301-11107763
REVERSE LENGTH=2867
Length=2867
Score = 1520 bits (823), Expect = 0.0
Identities = 891/925 (96%), Gaps = 0/925 (0%)
Strand=Plus/Plus
Query 31 CTTTCGTTTCAGAGTCTTGGTGTTGTTTATGGAGATTTGGGAACTTCGCCTTTATATGTT 90
||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 577 CTTTCATTTCAGAGTCTTGGTGTTGTTTATGGAGATTTGGGAACTTCTCCTCTATATGTT 636
Query 91 TTCTATAATACATTTCCTAGAGGGATCAAAGACCCTGAAGATATCATTGGAGCTTTATCG 150
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 637 TTCTATAATACATTTCCTCGAGGGATCAAAGACCCTGAAGATATCATTGGAGCTTTATCG 696
Query 151 CTAATCATATATTCCCTCACACTCATCCCTCTCCTCAAGTATGTTTTCGTTGTATGCAAA 210
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 697 CTAATCATATATTCCCTCACACTCATCCCTCTCCTCAAATATGTGTTCGTTGTATGCAAA 756
Query 211 GCAAACGATAATGGTCAAGGTGGAACATTTGCTCTCTATTCTTTGCTCTGTAGACATGCA 270
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 757 GCAAACGATAATGGGCAAGGTGGTACATTTGCTCTCTATTCTTTGCTCTGTAGACATGCA 816
Query 271 AAAGTTAGCACAATTCCGAACCAACACCGTACTGATGAAGAGCTTACTACTTATAGCCGT 330
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 817 AAAGTTAGCACAATTCCGAACCAACACCGTACTGATGAAGAGCTTACTACTTATAGTCGT 876
Query 331 ACTACATTTCATGAGCATTCTTTTGCTGCAAAAACCAAGAGATGGTTGGAGAAAGGTATC 390
|||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |
Sbjct 877 ACTACATTTCATGAGCGTTCTTTTGCTGCAAAAACCAAGAGATGGTTAGAGAACGGTACC 936
Query 391 TCTAGGAAAAATGCGCTACTTATTCTCGTTCTAGTCGGTACGTGCATGGTGATTGGCGAT 450
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 937 TCTAGGAAAAATGCGCTACTTATTCTCGTTCTTGTTGGTACGTGCATGGTGATAGGCGAT 996
Query 451 GGAATCCTTACTCCTGCCATTTCGGTTCTATCTGCTGCGGGTGGGCTCAGGGTAAACCTT 510
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 GGAATCCTTACTCCCGCCATTTCGGTTCTATCTGCTGCGGGTGGGCTCAGGGTAAACCTA 1056
Query 511 CCTCACATAAATAATGGTATTGTTGTTGTTGTGGCAGTTGTGATATTAGTGAGCTTGTTT 570
||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1057 CCTCATATAAACAACGGTATTGTTGTTGTTGTGGCTGTTGTGATATTAGTGAGCTTGTTT 1116
Query 571 AGTGTACAACATTATGGAACAGACAGAGTCGGGTGGCTTTTCGCGCCCATTGTATTTCTC 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 AGTGTACAACATTATGGAACAGACAGAGTCGGGTGGCTTTTCGCGCCCATTGTATTTCTC 1176
Query 631 TGGTTTCTCTTTATTGCAAGTATCGGTATGTTCAATATATGGAAACATGACCCAAGCGTT 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TGGTTTCTCTTTATTGCAAGTATCGGTATGTTCAATATATGGAAACATGACCCAAGCGTT 1236
Query 691 TTGAAAGCTTTTTCCCCGGTTTATATATATCGATATTTTAAACGAGGAGGCCAAGATCGC 750
|||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1237 TTGAAAGCGTTTTCCCCGGTTTATATATTTCGATATTTTAAAAGAGGAGGCCAAGATCGT 1296
Query 751 TGGACCTCACTTGGAGGCATTATGCTTAGTATCACAGGGATTGAAGCTCTCTTTGCGGAT 810
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 TGGACCTCGCTTGGAGGCATTATGCTTAGTATCACAGGGATTGAAGCTCTCTTTGCGGAT 1356
Query 811 CTATCTCATTTTCCAGTCTCAGCTGTGCAATTCGCTTTTACTGTAATTGTCTTTCCTTGC 870
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1357 CTCTCTCATTTTCCAGTCTCAGCTGTGCAATTCGCTTTTACTGTAATTGTGTTTCCTTGC 1416
Query 871 CTCCTTTTGGCGTATAGCGGACAAGCTGCATACCTTAGAAAGTACCCGCATCATGTGGAA 930
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1417 CTCCTTTTGGCTTATAGTGGACAAGCTGCATACCTTAGAAAGTACCCGCATCATGTCGAA 1476
Query 931 GACGCGTTTTATCAATCTATACCAA 955
||||||||||||||||| || ||||
Sbjct 1477 GACGCGTTTTATCAATCCATTCCAA 1501
Score = 1517 bits (821), Expect = 0.0
Identities = 909/952 (95%), Gaps = 4/952 (0%)
Strand=Plus/Plus
Query 956 TCCTCTTATTTAC-CGTTCTATCCCTTGTTGTGGAATGCACTTACTTCTCGGCGGTGCTC 1014
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1844 TCCTCTTATTTACTC-TTCTATCCCTTGTTGTGGAATGCACTTACTTCTCGGCGGTGCTC 1902
Query 1015 TTCAAGGTAAACCAAGGTGGATGGGTCCCGCTGGTCATCGCGGCGT-CGTTTCTCGTCAT 1073
|||||||| ||||||||||||||||| ||||||||||| ||||| | ||||||| |||||
Sbjct 1903 TTCAAGGTTAACCAAGGTGGATGGGTTCCGCTGGTCATTGCGGC-TGCGTTTCTTGTCAT 1961
Query 1074 CATGTACGTCTGGCACTATGGAACCCTCAAGAGGTATGAGTTTGAAATGCATAGTAAAGT 1133
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1962 CATGTATGTTTGGCATTATGGAACCCTCAAGAGGTATGAGTTTGAAATGCATAGTAAAGT 2021
Query 1134 CTCCATGGCTTGGATTCTCGGGCTCGGTCCTAGCCTTGGTCTTGTCCGTGTTCCTGGGAT 1193
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2022 CTCCATGGCTTGGATTCTCGGACTCGGTCCTAGCCTTGGTCTTGTCCGTGTTCCTGGGAT 2081
Query 1194 TGGCCTTGTTTACACCGAGCTAGCTAGCGGAGTCCCTCACATTTTCTCTCATTTCATCAC 1253
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2082 TGGCCTTGTTTACACCGAGCTAGCTAGTGGAGTCCCTCACATTTTCTCTCATTTCATCAC 2141
Query 1254 AAACCTGCCGGCAACTCACTCTGTCGTGATCTTTGTCTGCGTCAAGAACCTTCCCGTCTA 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2142 AAACCTGCCGGCAACTCACTCTGTCGTGATCTTTGTCTGCGTCAAGAACCTTCCCGTATA 2201
Query 1314 CACCGTCCCCCAGGAAGAACGGTTCCTTGTAAAAAGGATCGGACCCAAAACCTTCCACAT 1373
|||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct 2202 CACCGTTCCCCAGGAAGAACGGTTCCTTGTAAAAAGAATCGGACCCAAAAACTTTCACAT 2261
Query 1374 GTTCCGCTGCGTCGCGAGATACGGGTACAGAGACTTGCACAAGAAAGACGACGACTTTGA 1433
|||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2262 GTTCCGCTGCGTTGCGAGGTACGGATACAGAGACTTGCACAAGAAAGATGACGACTTTGA 2321
Query 1434 GAAACGTCTATTTGAAAGCCTCTTCCTTTTCCTCCGCCTCGAATCAATGATGGAAGGCTG 1493
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2322 GAAACGGCTCTTTGAAAGCCTCTTCCTTTTCCTCCGCCTCGAATCGATGATGGAAGGCTG 2381
Query 1494 CTCGGATTCCGACGATTACAGCGTCTGCGGAAGCCAACAACGACAGTCCAGAGATGGGGT 1553
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2382 CTCAGATTCCGAAGATTACAGCGTCTGCGGAAGCCAACAACGACAGTCCAGAGATGGGGT 2441
Query 1554 CACCGGGAATGGGAACGAGAATAGGAACTTGTCGGCGTTTGATACATTTGATTCTATAGA 1613
|| ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||
Sbjct 2442 CAACGGGAATGGGAACGAGATTAGGAACGTGTCGACGTTTGATACATTTGATTCTATAGA 2501
Query 1614 GTCGGTTATAGCTCCCACTGTAACAAAACGGACAAGCCACACAGTGACGGGGTCGAGCCA 1673
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 2502 GTCGGTTATAGCTCCCACTACAACAAAACGGACAAGTCACACAGTGACGGGGTCGAGCCA 2561
Query 1674 GATGAGCGGAGGAGGGGATGAGGTGGAGTTCATAAACGGCTGCAGAGACGCTGGAGTGGT 1733
||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||
Sbjct 2562 AATGAGCGGAGGAGGGGACGAAGTGGAGTTCATAAACGGGTGCAGAGACGCAGGAGTGGT 2621
Query 1734 GCACATAATGGGGAACACAGTGGTTCGAGCCAGGAGAGAAGCAAGGTTCTACAAGAGGAT 1793
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2622 GCATATAATGGGGAACACAGTGGTTCGAGCCAGGAGAGAGGCAAGGTTCTACAAGAGGAT 2681
Query 1794 AGCCATTGATTATGTTTATGCGTTTCTTAGGAAGATTTGTAGAGAAAACAGTGCCATTTT 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2682 AGCCATTGATTATGTTTATGCGTTTCTTAGGAAGATTTGTAGAGAAAACAGTGCCATCTT 2741
Query 1854 CAATGTTCCTCAGGAGAGCCTTTTAAATGTCGGCCAGATTTTCTATGTGTAA 1905
|||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2742 CAATGTTCCTCAGGAGAGCCTTTTAAATGTTGGCCAGATTTTCTATGTGTAA 2793
> AT2G35060.2 | Symbols: KUP11 | K+ uptake permease 11 | chr2:14775063-14778870
REVERSE LENGTH=2642
Length=2642
Score = 948 bits (513), Expect = 0.0
Identities = 788/921 (86%), Gaps = 17/921 (2%)
Strand=Plus/Plus
Query 31 CTTTCGTTTCAGAGTCTTGGTGTTGTTTATGGAGATTT-GGGAACTTCGCCTTTATATGT 89
||||| |||||||||||||||||||||||||| ||||| ||| || || ||| |||||||
Sbjct 317 CTTTCATTTCAGAGTCTTGGTGTTGTTTATGGTGATTTAGGG-ACATCTCCTCTATATGT 375
Query 90 TTTCTATAATACATTTCCTAGA-GGGATCAAAGACCCTGAAGATATCATTGGAGCTTTAT 148
|||||| |||||||||||| | ||||||||||| || |||||||||||||||||| |||
Sbjct 376 TTTCTACAATACATTTCCT-CATGGGATCAAAGATCCAGAAGATATCATTGGAGCTCTAT 434
Query 149 CGCTAATCATATATTCCCTCACACTCATCCCTCTCCTCAAGTATGTTTTCGTTGTATGCA 208
| || || || ||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct 435 CTCTCATTATTTATTCACTCACACTCATCCCTCTCCTCAAATACGTTTTCGTTGTATGTA 494
Query 209 AAGCAAACGATAATGGTCAA-G--GTGGAACATTTGCTCTCTATTCTTTGCTCTGTAGAC 265
||||||| |||||||||||| | |||| || |||||| | ||||| || ||||||||||
Sbjct 495 AAGCAAATGATAATGGTCAAGGTAGTGGGACGTTTGCTTTGTATTCATTACTCTGTAGAC 554
Query 266 ATGCAAAAGTTAGCACAATTCCGAACCAACACCGTACTGATGAAGAGCTTACTACTTATA 325
|||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 555 ATGCCAAAGTCAAAACAATTCAGAACCAACACCGTACTGATGAAGAGCTTACTACTTACA 614
Query 326 GCCGTACTACATTTCATGAGCATTCTTTTGCTGCAAAAACCAAGAGATGGTTGGAGAAAG 385
|||| ||||| || ||||||||||| |||||||| || || || |||||||| || ||||
Sbjct 615 GCCGCACTACGTTCCATGAGCATTCCTTTGCTGCTAAGACTAAAAGATGGTTAGA-AAAG 673
Query 386 -GTATC-TCTAGGAAAAATG-CGCTACTTATTCTCGTTCTAGTCGGTACGTGCATGGTGA 442
| | | ||||| ||||| | |||| |||||| | ||||| || |||||||| ||||| |
Sbjct 674 CGGA-CATCTAG-AAAAACGGCGCTTCTTATTTTAGTTCTTGTTGGTACGTGTATGGTCA 731
Query 443 TTGGCGATGGAATCCTTACTCCTGCCATTTCGGTTCTATCTGCTGCGGGTGGGCTCAGGG 502
| |||||||| ||||||||||| || ||||| ||||| || ||||| |||||||| || |
Sbjct 732 TCGGCGATGGTATCCTTACTCCCGCTATTTCTGTTCTCTCAGCTGCTGGTGGGCTAAGAG 791
Query 503 TAAACCTTCCTCACATAAATAATGGTATTGTTGTTGTTGTGGCAGTTGTGATATTAGTGA 562
|||||||||||||||||| |||||| |||||||| |||| || |||||||||||||| |
Sbjct 792 TAAACCTTCCTCACATAAGCAATGGTGTTGTTGTTTTTGTTGCTGTTGTGATATTAGTCA 851
Query 563 GCTTGTTTAGTGTACAACATTATGGAACAGACAGAGTCGGGTGGCTTTTCGCGCCCATTG 622
|||||||||| ||||| ||||||||||||||| | || || |||||||| ||||||||||
Sbjct 852 GCTTGTTTAGCGTACAGCATTATGGAACAGACCGGGTTGGTTGGCTTTTTGCGCCCATTG 911
Query 623 TATTTC-TCTGGTTTCTCTTTATTGCAAGTATCGGTATGTTCAATATATGGAAACATGAC 681
| |||| |||||||||||| ||| |||||||| ||||||| |||||| |||||||||||
Sbjct 912 T-TTTCCTCTGGTTTCTCTCTATCGCAAGTATTGGTATGTACAATATCTGGAAACATGAT 970
Query 682 CCAAGCGTTTTGAAAGCTTTTTCCCCGGTTTATATATATCGATATTTTAA-ACGAGGAGG 740
| || || ||||||||||| || ||||||||||||||||| |||||||| | |||||||
Sbjct 971 ACTAGTGTCTTGAAAGCTTTCTCTCCGGTTTATATATATCGGTATTTTAAGA-GAGGAGG 1029
Query 741 CCAAGATCGCTGGACCTCACTTGGAGGCATTATGCTTAGTATCACAGGGATTGAAGCTCT 800
| ||||| |||||||| ||||||||||||||||||||||| ||||| || ||||| ||
Sbjct 1030 TCGGGATCGTTGGACCTCTCTTGGAGGCATTATGCTTAGTATAACAGGAATCGAAGCACT 1089
Query 801 CTTTGCGGATCTATCTCATTTTCCAGTCTCAGCTGTGCAATTCGCTTTTACTGTAATTGT 860
||| || |||||||| |||||||| ||||||||||||||| |||||||||| ||||| ||
Sbjct 1090 CTTCGCTGATCTATCGCATTTTCCGGTCTCAGCTGTGCAAATCGCTTTTACGGTAATCGT 1149
Query 861 CTTTCCTTGCCTCCTTTTGGCGTATAGCGGACAAGCTGCATACCTTAGAAAGTACCCGCA 920
||||||||||| |||||||| ||||| ||||||||||| ||| |||| | ||| ||| |
Sbjct 1150 GTTTCCTTGCCTTCTTTTGGCTTATAGTGGACAAGCTGCGTACATTAGGAGGTATCCGGA 1209
Query 921 TCATGTGGAAGACGCGTTTTA 941
|||||| | || ||||||||
Sbjct 1210 TCATGTAGCTGATGCGTTTTA 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94326824055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5