BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg336279

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G07526.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   233    1e-60
  AT3G43880.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   141    7e-33
  AT3G29790.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   132    4e-30


> AT4G07526.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G33528.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr4:4358652-4360099 REVERSE LENGTH=768
Length=768

 Score =  233 bits (126),  Expect = 1e-60
 Identities = 165/182 (91%), Gaps = 9/182 (5%)
 Strand=Plus/Plus

Query  305  AATTCTCAGAAGTTTCTGATCTAAGT-AAGTGGTTTTCGAGTTATGTCTATGAGTCACCG  363
            |||||||||||||| ||||||||||| || |||| |||||||| ||||||||||||||||
Sbjct  446  AATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTGTGTCTATGAGTCACCG  504

Query  364  ATGTTGGATACAAGTGATGGTCTTGA------GTTTCTTGGAGAAAGTAAAGGTACAAAG  417
            ||| ||||||||||||||||||||||      ||||||||||||||||||||||| ||||
Sbjct  505  ATGATGGATACAAGTGATGGTCTTGAGTTTGCGTTTCTTGGAGAAAGTAAAGGTAGAAAG  564

Query  418  GAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGA-TTTTCA  476
            ||||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||||||
Sbjct  565  GAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTCATTCGCAGATTGAGTTTTCA  624

Query  477  GA  478
            ||
Sbjct  625  GA  626


 Score =  141 bits (76),  Expect = 7e-33
 Identities = 97/107 (91%), Gaps = 1/107 (1%)
 Strand=Plus/Plus

Query  476  AGATGAAGACTGCTGTATTTGGGGGAAATCTAAGAGAAAAGGTAGCAGTATTTTTCGAGA  535
            ||||||||||  | || ||||||| ||| |||||||||||||||||| | |||||||| |
Sbjct  663  AGATGAAGACAACAGTCTTTGGGGAAAACCTAAGAGAAAAGGTAGCAAT-TTTTTCGAAA  721

Query  536  ACCTAAGAGAAAGGAAGAGACTACAACAACCTGTGAAGCTGAGCTAA  582
            |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  722  ACCTAAGAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAGCTAA  768


> AT3G43880.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G07526.3); 
Has 32 Blast hits to 32 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15738173-15738616 
REVERSE LENGTH=264
Length=264

 Score =  141 bits (76),  Expect = 7e-33
 Identities = 108/122 (89%), Gaps = 7/122 (6%)
 Strand=Plus/Plus

Query  364  ATGTTGGATACAAGTGATGGTCTTGA----G--TTTCTTGGAGAAAGTAAAGGTACAAAG  417
            ||| ||||||||||  ||||||||||    |  ||||||||||||| |||||||||||||
Sbjct  1    ATGATGGATACAAGCAATGGTCTTGAGTTTGCTTTTCTTGGAGAAATTAAAGGTACAAAG  60

Query  418  GAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGA-TTTTCA  476
            ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||
Sbjct  61   GAAATGGAATTAGTCTCTTCTGAGGCTAAAGATATGTCTCAGTCGCAAGTTGAGTTTTCA  120

Query  477  GA  478
            ||
Sbjct  121  GA  122


> AT3G29790.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G33528.1); 
Has 40 Blast hits to 40 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:11693095-11693622 
REVERSE LENGTH=435
Length=435

 Score =  132 bits (71),  Expect = 4e-30
 Identities = 83/89 (93%), Gaps = 0/89 (0%)
 Strand=Plus/Plus

Query  476  AGATGAAGACTGCTGTATTTGGGGGAAATCTAAGAGAAAAGGTAGCAGTATTTTTCGAGA  535
            ||||||||| ||| |||||||||| ||| ||||||||||||||||||||||||| ||| |
Sbjct  159  AGATGAAGATTGCAGTATTTGGGGAAAACCTAAGAGAAAAGGTAGCAGTATTTTCCGAAA  218

Query  536  ACCTAAGAGAAAGGAAGAGACTACAACAA  564
            |||||||||||||||||||||||||||||
Sbjct  219  ACCTAAGAGAAAGGAAGAGACTACAACAA  247



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27980419879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5