BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336289
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32120.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1247 0.0
> AT1G32120.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING:
4 anthesis, C globular stage, F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant
mobile domain (InterPro:IPR019557), Protein of unknown function
DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana
protein match is: Aminotransferase-like, plant mobile domain
family protein (TAIR:AT1G51538.1); Has 16736 Blast hits
to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182;
Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174;
Other Eukaryotes - 4469 (source: NCBI BLink). | chr1:11552926-11558777
FORWARD LENGTH=3790
Length=3790
Score = 1247 bits (675), Expect = 0.0
Identities = 758/798 (95%), Gaps = 6/798 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTCTTTCAAGGGTCATGCTTTGCCAGGTACATTGTTCCTT-GTGGTTGGAGTATG 59
||||||||||||||||||||||||||||| ||||||||||| ||| || |||||||||||
Sbjct 2827 ATGGGTTCTTTCAAGGGTCATGCTTTGCCTGGTACATTGTT-CTTGGTAGTTGGAGTATG 2885
Query 60 GCACATTTGGAGCTCAGTGGTTCGATTCATATCGAATCCTAGTTCATTTCGGGTTCGAGT 119
|||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 2886 GCACATTTGGAGCTCAGTTGTTAGATACATATCGAATCCTAGTTCATTTCGGGTTAGAGT 2945
Query 120 TTGGCACCCTGTTCCTGGTTTTAATGATAGGATCAAGTACTTGGAGCTTTATGTTGTTAC 179
|||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2946 TTGGCATCCTGTTCCTGGTTTCAATGATAGGATCAAGTACTTGGAGCTTTACGTTGTTAC 3005
Query 180 TATTGGCTCGTTCATTGACTTGTGCATTGAGTTTTTGTATTCAACTCATCTCAAGTTCTT 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3006 TATTGGCTCGTTCATTGACTTGTGCATTGAGTTCTTGTATTCAACTCATCTCAAGTTCTT 3065
Query 240 TGTTGATGGTGTTTTGAATCCTTCCCACATGAATGATTTTGAGCACTCTGGGATGCTTCT 299
|||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 3066 TGTTAATGGTGTTTTGAATCCTTCCCATATGAATGACTTTGAGCACTCTGGGATGCTTCT 3125
Query 300 CATGTTCTTCATCCTCGGATTTATCGCTTTGCTCTCCGAGAAAACGAGGTTACTTCCTCT 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3126 CATGTTCTTCATCCTCGGATTTATCGCTTTGCTCTCCGAGAAAACAAGGTTACTTCCTCT 3185
Query 360 GCCACAAGAAGCTCTATGCT-TAATTGCTGCAACAGCCTTTACAGCTGAATGTCTTCTCT 418
||||||||||||||| || | |||| ||||||||||| ||||| || || ||||||||||
Sbjct 3186 GCCACAAGAAGCTCTGTG-TCTAATCGCTGCAACAGCTTTTACGGCAGAGTGTCTTCTCT 3244
Query 419 TCTT-TTCCCACCCCAAAAGCCACAAAGGTCTTGAAGGTTATTACCATCTCCTCCTCGTC 477
|||| || |||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3245 TCTTCTT-CCACTCCACAAGCCACAAAGGTCTTGAAGGTTATTACCATCTCCTCCTCGTC 3303
Query 478 TTTCTCATCGGTCTCTGCGTCATCTCCTCAATCGCAGGAGCAATCTGCCCTACAAGCTTC 537
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3304 TTTCTCATCGGTCTCTGCGTCATCTCCTCAATCGCTGGAGCAATCTGCCCTACAAGCTTC 3363
Query 538 CCAGTAGATCTATGCAATGGCATTGCAATGACTCTTCAAGGCCTCTGGTTTTACCAGACA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3364 CCAGTAGATCTATGCAATGGCATTGCAATGACTCTTCAAGGCCTCTGGTTTTATCAGACA 3423
Query 598 GCTTTCACTCTCTATGGCCCTATGATGCCTCAAGGCTGTAGTTTAAAACAAAACTCTGTA 657
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3424 GCTTTCACTCTGTATGGCCCTATGATGCCTCAAGGCTGCAGTTTAAAACAAAACTCTGTA 3483
Query 658 GTTTGCAGATCAGTCGATTCCGAAGTCTCCGGAGAGTTTCTGGCTAATTTTCAGCTATTT 717
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 3484 GTTTGCAGATCAGTTGATTCAGAAGTCTCAGGAGAGTTTCTGGCTAATTTTCAGCTCTTT 3543
Query 718 TCATTGGTTCTTGCTGTTCTTGTCTGCGTTGTGGGTTCATATGTATTTGCAGCTTCGAGA 777
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 3544 TCATTGGTTCTTGCTGTTCTTGTTTGCGTTGTGGGTTCATATGTTTTTGCAGCTTCAAGA 3603
Query 778 TTTGGAGTTAGTAGATGA 795
|||||||| |||||||||
Sbjct 3604 TTTGGAGTAAGTAGATGA 3621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5