BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg336313

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G32280.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   532    6e-151


> AT1G32280.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr1:11646220-11646816 
FORWARD LENGTH=339
Length=339

 Score =  532 bits (288),  Expect = 6e-151
 Identities = 322/339 (95%), Gaps = 0/339 (0%)
 Strand=Plus/Plus

Query  1    ATGGACAAGCACATCTTTTGTCAATTCTTAGTCCTAATGATGTTAATGTCATCATCCCAA  60
            ||||| ||||| || |||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct  1    ATGGAGAAGCAAATATTTTGTCAATTCTTAGTCGTAATGATGTTATTGTCATCATCTCAA  60

Query  61   ATTCAGGGAGAGTTGAGGAAAGGATGTTATGATTCAGGCATCACAGTTTTGATGGGTTGT  120
            ||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct  61   ATTCAGGGAGATTTGAGGAAAGGATGTTATGATTTAGGGATCACAGTTTTGATGGGTTGT  120

Query  121  CCTGATTCGATTGACAAGAAACTTCCAGCTCCTCCGACACCATCCGAAGGTTGTTGCACT  180
            || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCAGATTCTATTGACAAGAAGCTTCCAGCTCCTCCGACACCATCCGAAGGTTGTTGCACT  180

Query  181  CTTGTCCGAACCATTGGAATGAAATGTGTATGTGAAATCGTCAATAAGAAAATCGAAGAC  240
            |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  181  CTTGTCCGAACCATCGGAATGAAATGTGTATGTGAAATCGTCAACAAGAAAATCGAAGAC  240

Query  241  ACCATTGATATGCAAAAGCTCGTCAATGTCGCCGCAGCTTGTGCTCGTCCTCTTGCTCCT  300
            ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct  241  ACCATTGATATGCAAAAGCTCGTCAATGTCGCCGCAGCTTGTGGTCGTCCCCTTGCTCCT  300

Query  301  GGTTCACAATGCGGAAGTTACAGAGTTCCTGGTGCATGA  339
            ||||||||||||||||||||| |||||||||||||||||
Sbjct  301  GGTTCACAATGCGGAAGTTACCGAGTTCCTGGTGCATGA  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15834340935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5