BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg336321

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G32370.2 | Symbols: TOM2B, TTM1 | tobamovirus multiplication...   588    1e-167


> AT1G32370.2 | Symbols: TOM2B, TTM1 | tobamovirus multiplication 
2B | chr1:11676962-11678449 FORWARD LENGTH=800
Length=800

 Score =  588 bits (318),  Expect = 1e-167
 Identities = 350/366 (96%), Gaps = 0/366 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGACGGCATCGGAAAATTCAAGAGGAATCGGCGGAGGTGATCGAACGGCGAAAGCA  60
            ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| 
Sbjct  44   ATGGCGACGGCATCGGAAAATTCAAGAGGAATCAGCGGCGGTGATCGAACGGCGAAAGCT  103

Query  61   ATCGTCGCCGATCAGATCTCACAAGCCGTGAATTCTACTGCTAACCTTCTACAACTGATG  120
             |||||||||||||||| ||||||||||| ||||| |||||||||||||| || ||||||
Sbjct  104  GTCGTCGCCGATCAGATTTCACAAGCCGTAAATTCCACTGCTAACCTTCTTCATCTGATG  163

Query  121  CGTCAATCGTCTTCTTCTCAGGCCCAGTTGGCAAAGCTCCCGAAGAATCTGTTGGCTAAA  180
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct  164  CGTCAATCGTCTTCTTCTCAGGCTCAGTTGGCAAAGCTCCCGAAGAATCTGTTGGCGAAA  223

Query  181  GCTTCACTGACTAAGGCCACTGGACAAGCGTTGGCGCAGCTTCCTCAAGTGATTTCATCT  240
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  224  GCTTCACTGACTAAGGCCACTGGACAGGCGTTGGCGCAGCTTCCTCAAGTGATTTCATCT  283

Query  241  CTGGATGCTCATATAGAAAGCGGATTGCACAGCGGCGTTCATCTAAACACAGTAACTCAG  300
            || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  284  CTAGATGCTCATATAGAAAGCGGATTGCACAGCGGTGTTCATCTAAACACAGTAACCCAG  343

Query  301  TTACTTGAAAACATGGAAAGCACACAGCTTCGTGCTCTTCGACAATCTAATATTTCCCCT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  344  TTACTTGAAAACATGGAAAGCACACAGCTTCGTGCTCTTCGACAATCTAATATTTCCCCT  403

Query  361  TTGGTA  366
             |||||
Sbjct  404  GTGGTA  409



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5