BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336359
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32740.1 | Symbols: | SBP (S-ribonuclease binding protein) ... 1182 0.0
> AT1G32740.1 | Symbols: | SBP (S-ribonuclease binding protein)
family protein | chr1:11844877-11846347 FORWARD LENGTH=1210
Length=1210
Score = 1182 bits (640), Expect = 0.0
Identities = 863/963 (90%), Gaps = 45/963 (5%)
Strand=Plus/Plus
Query 1 ATGGCACTTCAAGCTCAACACCATTCCTCTAATCTCATCTTATTCAATAAAAGAAACGGG 60
|||||| |||||||||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct 7 ATGGCAGTTCAAGCTCAACACCATTCCTCCAATCTCCTCTTCCTCAATAAAAGAAACGGG 66
Query 61 AAAGAGAAAG-A-AGA-TAATTTTACATTACAATCAC-A--AGCTGGAGATTATCTTGAT 114
|||||||||| | | | |||||||||||||||||||| | ||||||||||| |||||||
Sbjct 67 AAAGAGAAAGAACATAGTAATTTTACATTACAATCACAAGCAGCTGGAGATTTTCTTGAT 126
Query 115 CAAACCAATATGTTATTCAACAATGGAAGTTCGAATCAGAGAAAAAGAAGAAGAGAAACG 174
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 127 CAAACCAATATGTTATTCAACAATGGAAGTTCTAATCAGAGAAAAAGAAGAAGAGAAACG 186
Query 175 AACAATCATCAGTTCTTACC-ACTGCAGTCTCATCAGTTTCCTCAAGTTATAGACTTATC 233
|||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 187 AACAATCATCAGTTATTACCTA-TGCAGTCTCATCAGTTTCCTCAAGTTATAGACTTATC 245
Query 234 TTTATTACATAACCACAATCATCCACCGTCGAATATGGTTCATACAGGACTCCGGTTATC 293
| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 246 TCTATTACACAACTACAATCATCCACCGTCGAATATGGTTCATACAGGACTCCGATTATT 305
Query 294 ATCCGGCGAAGATCAGGCACAAAAGATTAGTCATCAGATAAGTTTTGTCTCCGATTCGTC 353
||||||||||||||||||||||||||||| || | || | |||
Sbjct 306 TTCCGGCGAAGATCAGGCACAAAAGATTAG---TC-----A---------CC---T-GTC 344
Query 354 TGAAGATGTTTTTGCTGCACATATCAATAGGCAAAGCAAAGAACTTGATGAATTTCTTCA 413
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 345 TGAAGATGTTTTTGCTGCACATATCAATAGGCAAAGCGAAGAACTTGATGAGTTTCTTCA 404
Query 414 TGCCCAGGCGGAGGAGCTACGGCGCACATTAGTGGAGAAGAGGAAGAGGCACTATAAAGC 473
|||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct 405 TGCCCAGGCGGAGGAGCTACGGCGTACATTAGCGGAGAAGAGGAAGATGCACTATAAAGC 464
Query 474 GCTTCTTGGTGTTGTGGAGGAGCCGTTGGTTCGTAAGCTGAGGGAGAAAGAAGCAGAGAT 533
||||||||||| ||||| ||| |||||||||||||||||||||||||||| | ||||||
Sbjct 465 GCTTCTTGGTGCCGTGGAAGAGTCGTTGGTTCGTAAGCTGAGGGAGAAAGAGGTAGAGAT 524
Query 534 AGAGAGAGCCACGCGCCGTCACAATGACCTGGTGGCGCGTGACTCACAGCTGAGAGCGGA 593
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 525 AGAGAGAGCCACGCGCCGTCACAATGAGCTGGTGGCACGTGACTCGCAGCTGAGAGCGGA 584
Query 594 GACGCAAGAATGGCAAGAGAGAGCTAAGGCGCACGAAGCCGCCGCCGCGTCGCTGCAGGC 653
| ||||| |||||||||||||||||| |||||||||| ||||||||||||||||||| |
Sbjct 585 GGTGCAAGTATGGCAAGAGAGAGCTAAAGCGCACGAAGACGCCGCCGCGTCGCTGCAGTC 644
Query 654 TCAGCTCCAGCAGGCAGTTAACCAATGCG--G-TCG-TGTGT--CGGCGCAGGATAGTAG 707
|||||||||||| || ||||||||||||| | | | ||||| ||||||||||||||||
Sbjct 645 TCAGCTCCAGCAAGCCGTTAACCAATGCGCCGGTGGATGTGTATCGGCGCAGGATAGTAG 704
Query 708 AGCGGCGGAGGAAGA-C-ATT--GCGG-A-AATCAGCGGATTGGACGACGCCGAGTCGGT 761
|||||||||||||| | ||| || | |||||||||| |||| ||||||||||||||
Sbjct 705 AGCGGCGGAGGAAGGGCTATTATGCACCACAATCAGCGGAGTGGATGACGCCGAGTCGGT 764
Query 762 GTACGTGGATCCGGAGAG-GATGA-GACGGCCGAGTTGCAAAGCTTGCCGGGAAAGGGAA 819
|||||||||||||||||| | | | | ||||||| ||||||||||||||||||||| ||
Sbjct 765 GTACGTGGATCCGGAGAGAG-TAAAG-CGGCCGAATTGCAAAGCTTGCCGGGAAAGAGAG 822
Query 820 GCGACGGTGGTTGTGTTGCCATGTCGGCATCTGAGCATATGCCCGGGATGTGACCGGACA 879
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 823 GCAACGGTGGTTGTGTTGCCGTGTCGGCATCTGAGCATCTGCCCGGGATGTGACCGGACA 882
Query 880 GCTTTAGCGTGCCCGTTCTGTCTCACGTTGCGAAATTCAAGTGTTGAAGCTATCCTTGGC 939
|||||||| |||||||| |||||||||||||| ||||||||||||||||||||| || ||
Sbjct 883 GCTTTAGCTTGCCCGTTGTGTCTCACGTTGCGGAATTCAAGTGTTGAAGCTATCTTTTGC 942
Query 940 TAA 942
|||
Sbjct 943 TAA 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5