BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336380
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32970.1 | Symbols: | Subtilisin-like serine endopeptidase ... 294 6e-79
AT1G32980.1 | Symbols: | Subtilisin-like serine endopeptidase ... 152 4e-36
> AT1G32970.1 | Symbols: | Subtilisin-like serine endopeptidase
family protein | chr1:11948721-11951982 REVERSE LENGTH=2205
Length=2205
Score = 294 bits (159), Expect = 6e-79
Identities = 213/239 (89%), Gaps = 3/239 (1%)
Strand=Plus/Plus
Query 446 TTTATAAGGCTATGATTGAGGCTCCGATGGGTGTTAACGTGACCGTGACACCGAGCACAT 505
|||||||| || ||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1970 TTTATAAGCCTGTGATTGAGGCTCCAATGGGTGTTAACGTGACCGTGACACCAAGCACAT 2029
Query 506 TAGTGTTCAACACGCTAAGACCAGAAAGCTCTCGTTTCAAGGTCCGTGTGTTAACGAACC 565
|||||||| | | ||| | ||||| |||||||||||| ||||| ||||| ||||||||||
Sbjct 2030 TAGTGTTC-A-ATGCTTATACCAGGAAGCTCTCGTTT-AAGGTTCGTGTCTTAACGAACC 2086
Query 566 AAAGAGTGAACACTCGCTACTACTTTGGAAGCTTGACTTGGACTGAGTCTGTTCATAATG 625
| | |||||||||| | ||||||||||| |||||||||||||| || |||||||||||||
Sbjct 2087 ATATAGTGAACACTGGATACTACTTTGGTAGCTTGACTTGGACCGACTCTGTTCATAATG 2146
Query 626 CGGTCATTCCCGTGTCAGTGAGAACTCAGATCATGCAGCGTTATTACAATGAAAACTGA 684
||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 2147 TGGTTATTCCTGTGTCTGTGAGAACTCAGATCATGCAGCGTTATTATGATGAAAACTGA 2205
Score = 108 bits (58), Expect = 9e-23
Identities = 94/110 (85%), Gaps = 7/110 (6%)
Strand=Plus/Plus
Query 330 AAA-CCCGGTCTTGTTTACGATATGGGAGTTAACGATTACGTTCTCTAGTACTTGTGCT- 387
||| ||||||||||||||||||||||||||||| |||||| | ||||| |||||| |
Sbjct 1743 AAACCCCGGTCTTGTTTACGATATGGGAGTTAAAGATTACATCCTCTA---CTTGTGTTC 1799
Query 388 ATGTTTGGTTACAAAGATTTATCCATTACTAGACTCGTCCGCAAGAAGAC 437
| ||| ||||||| ||||| ||| |||||| |||||||| ||||||||||
Sbjct 1800 A-GTT-GGTTACACAGATTCATCTATTACTGGACTCGTCAGCAAGAAGAC 1847
> AT1G32980.1 | Symbols: | Subtilisin-like serine endopeptidase
family protein | chr1:11954278-11955362 REVERSE LENGTH=879
Length=879
Score = 152 bits (82), Expect = 4e-36
Identities = 110/123 (89%), Gaps = 4/123 (3%)
Strand=Plus/Plus
Query 321 AAAGCCTCGAAACCCGGTCTTGTTTACGATATGGGAGTTAACGATTACGTTCTCTAGTAC 380
|||||| |||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 523 AAAGCCGCGAAACCCGGTCTTGTTTACGATATGGGAGTTAACGATTATGTTCTATA-T-- 579
Query 381 TTGTGCTATGTTTGGTTACAAAGATTTATCCATTACTAGACTCGTCCGCAAGAAGACGGG 440
||||||| ||| ||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 580 TTGTGCTCCGTT-GGTTACACAGATTCATCCATTACTAGACTTGTCCGCAAGAAGACGGT 638
Query 441 TTG 443
|||
Sbjct 639 TTG 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33104302873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5