BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336411
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33350.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2372 0.0
AT1G56690.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 73.1 8e-12
AT3G22690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein o... 65.8 1e-09
> AT1G33350.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:12089403-12091687 REVERSE LENGTH=2285
Length=2285
Score = 2372 bits (1284), Expect = 0.0
Identities = 1450/1532 (95%), Gaps = 4/1532 (0%)
Strand=Plus/Plus
Query 1 ATGGGGACACGTGTAACGCAATTCACTTACCTCCACGCGCCGTCGTCACACATGGCGGAG 60
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGACACGTGTAACACAATTCTCTTACCTCCACGCGCCGTCGTCACACATGGCGGAG 60
Query 61 CAGTTAGTGAATCAATTCATCTCCGCCGCGATCTCAAAGTCGAGACATTTGAATCATTTG 120
|||||| ||||||||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct 61 CAGTTACTGAATCAATTCATCTCCGCAGTGATATCAAAGTCGAGACATTTGAATCATTTG 120
Query 121 AAGCAAGTTCAGTCCTTTTTGATAGTTTCTGGACTAAGTCATTCACATTTCCTCTGTTTT 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCAAGTTCAGTCCTTTATGATAGTTTCTGGACTAAGTCATTCACATTTCCTCTGTTTT 180
Query 181 AAGCTTCTTCGTTTTTGTACTCTTCGTCTCTGTAATCTCTCTTACGCTCGCTTTATCTTT 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGCTTCTTCGTTTTTGTACGCTTCGTCTCTGTAATCTCTCTTACGCTCGCTTTATCTTT 240
Query 241 GATCGTTTCTCTTTCCCTAATACTCAT-TTATACGCTGCCGTTTTAACTGGTTActcttc 299
||||||||||||||||| ||||| ||| || ||||||||||||||||||| |||||||||
Sbjct 241 GATCGTTTCTCTTTCCCCAATACGCATCTT-TACGCTGCCGTTTTAACTGCTTACTCTTC 299
Query 300 ttctcttcctcttcatgcttcctctgctttctcattctttcgtctcATGGTTAATCGTTC 359
||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 300 TTCTCTTCCTCTTCATGCTTCTTCAGCTTTCTCCTTCTTTCGTCTCATGGTTAATCGTTC 359
Query 360 TTTTCCTCGGCCTAATCACTTTATCTACCCTCTTGTTCTTAAGTCTACACCATATCTCTC 419
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 TGTTCCTCGGCCTAATCACTTTATCTACCCACTTGTTCTTAAGTCTACACCATATCTCTC 419
Query 420 CTCTGCTTTTTCAACTCCTTTGGTTCATACCCATTTGTTTAAATCTGGGTTTCATCTCTA 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 CTCTGCTTTTTCAACTCCTTTGGTGCATACCCATTTGTTTAAATCTGGGTTTCATCTCTA 479
Query 480 TGTTGTTGTTCAAACTGCTCTGCTTCACTCTTACGCTTCCTCTGTTTCTCATATAACTCT 539
||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 480 TGTCGTTGTTCAAACTGCTCTTCTTCACTCCTACGCTTCCTCTGTTTCTCATATAACTCT 539
Query 540 TGCAAGACAACTGTTCGACGAAATGTCTGAGAGAAATGTTGTTTCTTGGACTGCTATGCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGCAAGACAACTGTTCGACGAAATGTCTGAGAGAAATGTTGTTTCTTGGACTGCTATGCT 599
Query 600 TTCTGGGTATGCTAGGTCTGGTGATATCTTTAATGCTGTTGCTCTCTTTGAAGAAATGCC 659
||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||
Sbjct 600 TTCTGGGTATGCTAGGTCTGGTGATATCTCTAATGCTGTTGCTCTTTTTGAAGATATGCC 659
Query 660 TGAGCGTGATGTTCCTTCTTGGAATGCGATTCTTGCTGCTTGTACTCAGAATGGTCTTTT 719
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGAGCGTGATGTTCCTTCCTGGAATGCGATTCTTGCTGCTTGTACTCAGAATGGTCTTTT 719
Query 720 TGTTGAAGCGGTTTCTCTGTTTAGAAGGATGATTAATGACCCTTGTATTCGTCCTAATGC 779
| ||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 720 TCTTGAAGCGGTTTCTCTGTTTAGAAGGATGATTAATGAGCCTAGCATTCGTCCTAATGA 779
Query 780 GGTTACTTTGGTTTGTGTTCTCTCTGCTTGTGCACAAACTGGTACGCTTCAGCTGGCTAA 839
||| ||| | |||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 780 GGTAACTGTAGTTTGTGTCCTCTCTGCGTGTGCTCAAACTGGTACGCTTCAGCTGGCTAA 839
Query 840 AGGGATTCATGCGTTTGCGTATCGTCGTAATCTTTCTTCTGATGTGTTTGTTTCGAATTC 899
|||||||||||| ||||| || |||||| |||||||||||||||||||||||||||||||
Sbjct 840 AGGGATTCATGCCTTTGCTTACCGTCGTGATCTTTCTTCTGATGTGTTTGTTTCGAATTC 899
Query 900 TTTGGTTGATTTGTATGGAAAATGTGGTAACTTGGAGGAAGCAAGCTCTGTTTTTAAAAT 959
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 TTTAGTTGACTTGTATGGAAAATGTGGTAACTTGGAGGAAGCAAGCTCTGTTTTTAAGAT 959
Query 960 GAGT-TCAAAGAAAAGTTTAACAGCTTGGAATTCTATGATCAATTGCTTTGCACTCCATG 1018
| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 G-GCATCCAAGAAAAGTTTAACAGCTTGGAATTCTATGATCAATTGCTTTGCACTCCATG 1018
Query 1019 GTAGAAGTGAAGAAGCCATAGCAGTGTTTGAGGACATGATGAAGTTGAATAGTCACGATA 1078
|||||||||||||||||||||| |||||||| || |||||||||||||| | | ||||||
Sbjct 1019 GTAGAAGTGAAGAAGCCATAGCTGTGTTTGAAGAAATGATGAAGTTGAACATTAACGATA 1078
Query 1079 TCAAGCCAGATCACATTACTTTTATCGGTCTTCTCAATGCGTGTACTCATGGGGGTTTGG 1138
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1079 TCAAACCAGATCACATTACTTTCATCGGTCTTCTCAATGCGTGTACTCATGGAGGTTTGG 1138
Query 1139 TATCAAAAGGTCGAGGTTATTTCGATCTGATGACAAAAAGATTCGGTATTGAGCCAAGGA 1198
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1139 TATCAAAAGGCCGAGGTTATTTCGATCTGATGACAAACAGATTCGGTATTGAGCCAAGGA 1198
Query 1199 TTGAGCACTATGGCTGTCTAATAGATCTTCTAGGCAGGGCAGGTCAGTTCGATGAAGCTT 1258
||||||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct 1199 TTGAGCATTATGGCTGTCTAATAGATCTTTTAGGCAGGGCAGGTCGGTTTGATGAAGCTT 1258
Query 1259 TGGAAACTATGTCCACGATGAAGATGGAAGCGGATGAAGCGATTTGGGGCTCATTGCTTA 1318
| ||| ||||||||||||||||||| |||||||||| || |||||||| ||| ||||||
Sbjct 1259 TAGAAGTTATGTCCACGATGAAGATGAAAGCGGATGAGGCTATTTGGGGATCACTGCTTA 1318
Query 1319 ATGCTTGTAAAAAATATGGCCATTTGGATTTGGCTGAAGTTGCTGTAAAAAATCTTGTTG 1378
|||||||||| | | |||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 1319 ATGCTTGTAAGATACATGGCCATCTGGATTTGGCTGAAGTTGCTGTAAAAAACCTGGTTG 1378
Query 1379 CTTTAAATCCCAACAATGGAGGTTATGTCGCTATGATGGCAAATTTATATGGAGAGATGG 1438
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CTTTAAATCCTAATAATGGAGGTTATGTCGCTATGATGGCAAATTTATATGGAGAGATGG 1438
Query 1439 GTAATTGGGAAGAGGCACGCAGAGCTAGAAGGATGATCAAGCACCAAAATGCTTATAAAC 1498
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1439 GTAATTGGGAAGAGGCACGTAGAGCTAGAAAGATGATCAAGCACCAAAATGCTTATAAAC 1498
Query 1499 CACCAGGCTGGAGTCAGATTGAGATCGATAAC 1530
||||||||||||||| ||||||||||||||||
Sbjct 1499 CACCAGGCTGGAGTCGGATTGAGATCGATAAC 1530
Score = 169 bits (91), Expect = 1e-40
Identities = 117/129 (91%), Gaps = 4/129 (3%)
Strand=Plus/Plus
Query 1636 ACAGGTCCATGGACAATTAAACATTCGAGAAGAGGAAGTCTCTTACGCCAAGCATTGGTA 1695
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1948 ACAGGTCCATGGACAATCAAACATTCGAGAAGAGGAAGTCTCTTACGCCAAGCATTAGTA 2007
Query 1696 CTCGTTAGTTATGA-CTTTAAGCTTTT-TAACACTT-CCTCATGTATCTTCATTGGGAAT 1752
|| ||| |||||| |||| || |||| |||||||| ||||||||||||| |||| ||||
Sbjct 2008 CTATTTAATTATGATCTTTTAG-TTTTCTAACACTTTCCTCATGTATCTTTATTGAGAAT 2066
Query 1753 GATCAATAA 1761
|||||||||
Sbjct 2067 GATCAATAA 2075
> AT1G56690.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:21253817-21255931 FORWARD LENGTH=2115
Length=2115
Score = 73.1 bits (39), Expect = 8e-12
Identities = 56/64 (88%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 547 CAACTGTTCGACGAAATGTCTGAGAGAAATGTTGTTTCTTGGA-CTGCTATGCTTTCTGG 605
|||||||||||||||||||||||||||||||| ||||| |||| | | | || |||| ||
Sbjct 205 CAACTGTTCGACGAAATGTCTGAGAGAAATGTAGTTTCCTGGAACGGGT-TGGTTTCAGG 263
Query 606 GTAT 609
||||
Sbjct 264 GTAT 267
> AT3G22690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein
of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide
repeat (InterPro:IPR002885); BEST Arabidopsis thaliana
protein match is: Tetratricopeptide repeat (TPR)-like superfamily
protein (TAIR:AT2G29760.1); Has 49784 Blast hits to
14716 proteins in 280 species: Archae - 2; Bacteria - 10;
Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other
Eukaryotes - 904 (source: NCBI BLink). | chr3:8021229-8024534
REVERSE LENGTH=2935
Length=2935
Score = 65.8 bits (35), Expect = 1e-09
Identities = 56/66 (85%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 551 TGTTCGACGAAATGTCTGAGAGAAATGTTGTTTCTTGGACT-GCTATGCTTTCTGGGTAT 609
|||| || |||||||||||||||||||||||||||||||| | |||| ||| ||| ||
Sbjct 572 TGTTTGATGAAATGTCTGAGAGAAATGTTGTTTCTTGGACGAG-TATGATTTGTGGTTAC 630
Query 610 GCTAGG 615
|| |||
Sbjct 631 GCGAGG 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87097945575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5