BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336421
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33475.1 | Symbols: | SNARE-like superfamily protein | chr1... 1044 0.0
AT1G33480.1 | Symbols: | RING/U-box superfamily protein | chr1... 723 0.0
AT4G10170.1 | Symbols: | SNARE-like superfamily protein | chr4... 244 1e-63
> AT1G33475.1 | Symbols: | SNARE-like superfamily protein | chr1:12147276-12148249
REVERSE LENGTH=974
Length=974
Score = 1044 bits (565), Expect = 0.0
Identities = 692/753 (92%), Gaps = 9/753 (1%)
Strand=Plus/Plus
Query 700 GTTCACTACTGTTGTGTCTCAAGAGACAATCAGATTCTGTACTCTTACAACAATGCCGGA 759
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 81 GTTCACTACTGTTGTGTCTCAAGAGACAATCAGATTATGTACGCTTACAACAATGCCGGA 140
Query 760 GACCACCGCAACAACGAGAGTCTCGCAGCGTTATGCTTGGAAAAGACTCCATCTTTTCAC 819
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 141 GACCACCGCAACAACGAGAGTCTTGCAGCGTTATGCTTGGAAAAGACTCCACCTTTTCAC 200
Query 820 AAGTGGTACTTCGAAACGATAAGCAAGAGGACTTTTGGGTTCTTGATGGAAGATGGGTTC 879
||||||||||||||||||| | |||| ||||||||| ||||||||| |||||| |||
Sbjct 201 AAGTGGTACTTCGAAACGAGGGGTAAGAAGACTTTTGGATTCTTGATGAAAGATGACTTC 260
Query 880 GTTTATTTCACCATTGTTGATGATGTTTTCAAGAGATCTAGCGTTCTTGATTTTCTTGAG 939
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 261 GTTTATTTCGCCATTGTTGATGATGTTTTCAAGAAATCTAGCGTTCTTGATTTTCTTGAA 320
Query 940 AAACTGAAG-GATGAG-TCAAAGAAAGCTAATAAGAAGAATTCCAGAGGAAGTTTCTCTG 997
|||||| || |||||| | |||| ||||||||||||||||||| ||||||||||||||||
Sbjct 321 AAACTG-AGAGATGAGTTAAAAG-AAGCTAATAAGAAGAATTCTAGAGGAAGTTTCTCTG 378
Query 998 GGAGTATCAGTTTTAGCAATGTTCAAGACCAAATTGTTCGAAGACTCATAGCTTCACTGG 1057
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 379 GTAGTATCAGTTTTAGCAATGTTCAAGACCAAATTGTCCGAAGACTCATAGCTTCATTAG 438
Query 1058 AGAATGATCTCACTTGTCTTCCAATATCATTACCTTCCATTGATGGTGCTGAACAAAGCG 1117
|| ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 439 AGTTTGATCACACTTGTCTTCCATTATCATCACCTTCCATTGATGGTGCTGAACAAAGCT 498
Query 1118 ACGCAGCTAATTCCACGAAAGCTCCGCTTTTAGGCAGATCCAACAAGCAAGAGAAGAAGA 1177
||||| |||| | | | |||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 499 ACGCATCTAACT-C-C-AAAGCTCCTCTTTTAGGAAGATCCAACAAGCAAGATAAGAAGA 555
Query 1178 AAGGAAGAGATCATGTGCACTCACTGAGAGGCATTGAGATTGAAGAACACCGGAAATCGA 1237
|||| |||||||||| ||||||||| ||||| |||||||| || |||||||| ||||| |
Sbjct 556 AAGGGAGAGATCATGCGCACTCACTAAGAGGTATTGAGATAGAGGAACACCGAAAATCAA 615
Query 1238 ATGATAGAGGAAACGTAACAGAATGTTCTAATGCCTCATCTGCAGCAGCAACGTATGTTT 1297
|||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 616 ATGATAGAGGAAACGTAACAGAATGTTCTAATGCTTCATCTGAATCAGCAACGTATGTTC 675
Query 1298 CAAGAAGGGGACGAT-TAGGTGGTTCTCAGAGCATTGAGAGGAAATGGCGGCGTCAAGTG 1356
||||||||||||||| | ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 676 CAAGAAGGGGACGATCT-GGTGGCTCTCAGAGCATTGAGAGGAAGTGGCGGCGTCAAGTG 734
Query 1357 CAGATTGTTCTTGCCATTGATGCAGCTATTTGCTTAACGCTACTTGGTATTTGGTTGGCT 1416
|||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||
Sbjct 735 AAGATTGTTCTTGCCATTGATATAGCTATTTGCTTAACGCTGCTTGGTGTTTGGTTGGCT 794
Query 1417 ATTTGTCATGGCATTGAGTGTACACGTTCTTGA 1449
|||||||||||||||||||||||||||||||||
Sbjct 795 ATTTGTCATGGCATTGAGTGTACACGTTCTTGA 827
> AT1G33480.1 | Symbols: | RING/U-box superfamily protein | chr1:12148602-12150263
REVERSE LENGTH=1084
Length=1084
Score = 723 bits (391), Expect = 0.0
Identities = 441/466 (95%), Gaps = 0/466 (0%)
Strand=Plus/Plus
Query 114 TAGCTCTGATTTGTCTTCTCTCGGAATGCGAACTACTTTCATCCCTGGAAACTCTCTCTC 173
||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 292 TAGCTCTGATTTGTCTTCTCTTGGAATGCGAACTACTTTCATCCCCGGGAACTCTCTCTC 351
Query 174 CACGATTGAATTAGGATTGAGCAAAGAGCTGAGAGAGATGCTTCCCATTGTTGTCTTTAA 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CACGATTGAATTAGGATTGAGCAAAGAGCTGAGAGAGATGCTTCCCATTGTTGTCTTTAA 411
Query 234 AGAGAGCTTCACCATAATGGATTCACAATGTTCAGTGTGCCTTGGGGACTATCAAGCAAA 293
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 412 AGAGAGCTTCACCGTAATGGATTCACAATGTTCAGTGTGCCTTGGGGACTATCAACCAAA 471
Query 294 TGACAAGCTTCAACAGATCCCGGTATGTAAACACACTTTTCACATGGACTGCATTGATCT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TGACAAGCTTCAACAGATCCCGGTATGTAAACACACTTTTCACATGGACTGCATTGATCT 531
Query 354 TTGGCTCACATCACATACCACTTGCCCTCTTTGTCGTCTCGCTCTTATCCCGAGCCGATC 413
||||||||||||||||||||||||||||||||| || |||||||| |||||||| || ||
Sbjct 532 TTGGCTCACATCACATACCACTTGCCCTCTTTGCCGCCTCGCTCTAATCCCGAGTCGTTC 591
Query 414 CCATCAAAGCCAAGAGGATCCTGTTCCGAGTCTCGTGAGCCCTGATGGAGAAGTGTTGAG 473
|| |||||||||||| |||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 592 CCGTCAAAGCCAAGATGATCCTGTTCCGAGTCTCGTAAGCCCTGATGAAGAAGTGTCGAG 651
Query 474 TCAACCTGAATCTGAGCCAGTAAACCACAGTGGAGTGTCAAGTCAACCGGAATCTGAGCC 533
|||||| ||||||||||||||||||||||| | |||||| | |||||| |||||||||||
Sbjct 652 TCAACCAGAATCTGAGCCAGTAAACCACAGAGTAGTGTCGACTCAACCAGAATCTGAGCC 711
Query 534 AGTAAACCACAGAGGAGTGTCGAGTCAACCGGAATCTGAGCCAGTA 579
|||||||||||| ||||| ||||||||||| |||||| ||||||||
Sbjct 712 AGTAAACCACAGTGGAGTCTCGAGTCAACCAGAATCTCAGCCAGTA 757
Score = 307 bits (166), Expect = 2e-82
Identities = 218/243 (90%), Gaps = 3/243 (1%)
Strand=Plus/Plus
Query 461 GAGAAGTGTTGAGTCAACCTGAATCTGAGCCAGTAAACCACAGTGGAGTGTCAAGTCAAC 520
||| ||||| || |||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 681 GAGTAGTGTCGACTCAACCAGAATCTGAGCCAGTAAACCACAGTGGAGTCTCGAGTCAAC 740
Query 521 CGGAATCTGAGCC---AGTAAACCACAGAGGAGTGTCGAGTCAACCGGAATCTGAGCCAG 577
| |||||| |||| |||||||||||||||||| |||||||||||||| ||| ||||||
Sbjct 741 CAGAATCTCAGCCAGTAGTAAACCACAGAGGAGTCTCGAGTCAACCGGAGTCTCAGCCAG 800
Query 578 TAAACCACATAAACCATGGCCAAGAGCAGCAATGTGATCAAGATGGAGAGGGCTTTAAGG 637
|||||||||| ||| ||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 801 TAAACCACATTAACGATGGCCATGAGCAGCAATGTGATCAAGATGTAGAGGGCTTTAAGG 860
Query 638 AAATGCAAGAGGATGAACAAAACAGCATCGGGTCATCGAATGCTTGTTGTAGTTGTAGAC 697
||||| ||||||| |||| ||||| ||||||| |||||| |||||||||||||||||||
Sbjct 861 AAATGGAAGAGGACGAACGAAACAACATCGGGACATCGAGTGCTTGTTGTAGTTGTAGAA 920
Query 698 CTG 700
|||
Sbjct 921 CTG 923
> AT4G10170.1 | Symbols: | SNARE-like superfamily protein | chr4:6344331-6345537
FORWARD LENGTH=1207
Length=1207
Score = 244 bits (132), Expect = 1e-63
Identities = 586/791 (74%), Gaps = 88/791 (11%)
Strand=Plus/Plus
Query 700 GTTCACTACTGTTGTGTCTCAAGAGACAATCAGATTCTGTACTCTTACAACAATGCCGGA 759
||||| |||||||||||||||||||||||||||||||| |||||||||||| || | |
Sbjct 278 GTTCATTACTGTTGTGTCTCAAGAGACAATCAGATTCTTTACTCTTACAACGGTG--G-A 334
Query 760 GACCACCGCAAC-AACGAGAGTCTCGCAGCGT-TATGCTTGGAAAAGACTCCATC-TTTT 816
||||| ||| ||||||||||| || || | | || || |||||| |||| || ||||
Sbjct 335 GACCA----AACCAACGAGAGTCTTGCTGC-TCTGTGTTTAGAAAAGTCTCC-TCCTTTT 388
Query 817 CACAAGTGGTACTTCGAAACGATAAGCAAGAGGACTTTTGGGTTCTTGAT-GGAAGATGG 875
|| | |||||||| ||||| || | || || | |||||||| || || ||| |||||
Sbjct 389 CATACTTGGTACTTTGAAACTATTGGTAAAAGAAGATTTGGGTTTTTAATTGGA-GATGG 447
Query 876 GTTCGTTTATTTCACCATTGTTGATGATGTTTTCAAGAGATCTAGCGTTCTTGATTTTCT 935
||| ||||||||| ||||||||||||| ||||| ||||||||||| |||||| | |||||
Sbjct 448 GTTTGTTTATTTCGCCATTGTTGATGAGGTTTTGAAGAGATCTAGTGTTCTTAAGTTTCT 507
Query 936 TGAGAAACT-GA-AGGATGAGTCAAAGAAAGCTAATAAGAAGAATTCCAGAGGAAGTTTC 993
||| | | | || || |||| | ||||||||| || | ||||||| |||||||||||
Sbjct 508 TGA-ACATTTGAGAG-ATGAATTTAAGAAAGCTGCTAGGGAGAATTCTAGAGGAAGTTT- 564
Query 994 T-CTGGGA-GTATCAGTTTTAGCAATGTTCAAGACCAAATTGTTC--G-----A--AGAC 1042
| ||| | | || ||| || |||||| |||| || |||||| | | ||||
Sbjct 565 TACTGCTATG-ATTGGTTCTATTAATGTTGAAGATCAGCTTGTTCCTGTTGTTACTAGAC 623
Query 1043 TCATAGCTTCACTGGAGAA-TGAT-CTCACT-T-GTCTTC-CAAT-ATCATT-ACCT-TC 1094
| |||||||| || || | || | || | | || | |||| | ||| | |
Sbjct 624 TTATAGCTTCTCTTGA-ACGTGTTGCTGAGAGTAGTAGTAACAATGA--ATTGAAGAGT- 679
Query 1095 CATTGATGGTGCTGAACAAAGCGACGCAGCTAATTCCACGAAAGCTCCGCTT-TTAGGCA 1153
| | || || |||||||||||| | | ||||| || ||||||||| || || || |
Sbjct 680 -AGTAATCTTGGTGAACAAAGCGAAGGTTCGAATTCTACTAAAGCTCCG-TTGTTGGGGA 737
Query 1154 GATCCAAC-AAGCAAGAGAAGAAGAAAGG-AAGAGATCATGTGCACTCACTGAGAGGCAT 1211
| | || |||||||||||||||||||| || |||||||||| | | |||| | |
Sbjct 738 GGTT-AAGTAAGCAAGAGAAGAAGAAAGGGAA-AGATCATGTG-A-T---TGAG---C-T 786
Query 1212 TGAGATTGAAGAACACCGGAAATCGAATGATAGAGGAAACGTAACAGAATG-TTCTAATG 1270
|||| ||| | || |||| || ||||||||||| ||| |||| || || ||| | |
Sbjct 787 TGAG---GAACA-CA--GGAAGTCTAATGATAGAGGGAACATAACCGA-TGATTC-AGCG 838
Query 1271 C---CTC-ATC-T-GCAGCAGCAACGTA-TGT-T-TCAAGAAGGGGACGATTAGGTGGTT 1321
|| | | | | | || || | | ||| | || || || ||||| || || ||
Sbjct 839 GGAGCTGGAACGTCGTTGGAG-AAGG-AGTGTGTGTCGAGTAGTGGACG-TTC--TG-TT 892
Query 1322 -CTCAGAGCATTGAGA-GGAAATGGCGGCG-TCAAGTGCAGATTGTTCTTGCCATTGATG 1378
|||| ||| |||| | ||||||||||||| | | || |||||||||||||| |||||||
Sbjct 893 ACTCAAAGCTTTGA-ATGGAAATGGCGGCGGTTA-GTTCAGATTGTTCTTGCTATTGATG 950
Query 1379 CAGCTATTTGCTTAACGCTACTTGGTATTTGGTTGGCTATTTGTCATGGCATTGAGTGTA 1438
||||||||||||| || || ||||||||||||||||||| |||| || || |||||||
Sbjct 951 CAGCTATTTGCTTGACACTGTTTGGTATTTGGTTGGCTATATGTCGGGGTATCGAGTGTA 1010
Query 1439 CACGTTCTTGA 1449
||||||| |||
Sbjct 1011 CACGTTCGTGA 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5