BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg336448

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G33810.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   667    0.0  


> AT1G33810.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast thylakoid membrane, chloroplast, 
chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED 
DURING: 13 growth stages; Has 39 Blast hits to 39 proteins 
in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 
(source: NCBI BLink). | chr1:12265033-12266847 FORWARD LENGTH=660
Length=660

 Score =  667 bits (361),  Expect = 0.0
 Identities = 401/420 (95%), Gaps = 3/420 (1%)
 Strand=Plus/Plus

Query  1    ATGGCGAAGAAGAAGGAACTGTTATCAAAAGCACCGTGGAGAGGCGACGACGATGATGAC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  52   ATGGCGAAGAAGAAGGAACTGTTATCAAAAGCACCGTGGAGAGGCGACGACGAAGATGAT  111

Query  61   TCTGATAAGTTTAGCAACGCAAAGCTTAAAGTCACAAAGGATTCTGATGGTATGTCGAAG  120
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  112  TCCGATAAGTTTAGCAACGCAAAGCTTAAAGTCACAAAGGATTCTGATGGTATGTCGAAG  171

Query  121  ATGCACGTTCCTAGTCGTGGAACCAAAAAGGGAAGTCTCGCtgatgatgatgatgatgat  180
            |||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||  |
Sbjct  172  ATGCACGTCCCTAGCCGCGGAACCAAAAAAGGAAGTCTCGCTGATGATGATGATGAT--T  229

Query  181  TCACTTGAGATTGATCCTCAGCTTCGTTACAGCTTCAATCGCAACTACCAGTTCCTGCAA  240
             |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  230  -CACTTGAGATTGATCCTCAGCTTCGTTACAGCTTCAATCGCAACTATCAGTTCCTGCAA  288

Query  241  AGTGTATTCACTATAGACACTTTGGTGAAGCCTCTTCCTCCTGCAATGGCATTCAACGTC  300
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct  289  AGTGTATTCACTATAGACACTTTGGTGAAGCCTCTTCCTCCTTCAATGGCATTCAATGTC  348

Query  301  TCTCGCAACTTGAGTTTCTTCACCCGCATTTTCACTCAGTTCTTTGATCCTGAAGGCATT  360
            |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  349  TCTCGCAACTTGAGCTTCTTCACCCGCATTTTCACTCAATTCTTTGATCCTGAAGGCATT  408

Query  361  GCAAATGCACAGAAGTCTCTGGGGTTGGGGCAGGAAGATAAAGCGCGTCGTGTTCGTTGA  420
            |||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||
Sbjct  409  GCAAATGCACAGAAGTCTCTAGGGTTGGGGCAGGAAGAGAAAGCTCGCCGTGTTCGTTGA  468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19906028604


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5