BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336456
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33930.1 | Symbols: | P-loop containing nucleoside triphosp... 1400 0.0
AT1G33910.1 | Symbols: | P-loop containing nucleoside triphosp... 209 3e-53
> AT1G33930.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:12323888-12327084
FORWARD LENGTH=1011
Length=1011
Score = 1400 bits (758), Expect = 0.0
Identities = 892/955 (93%), Gaps = 15/955 (2%)
Strand=Plus/Plus
Query 24 TGACCGTTGGGAGTTGCCTTCAGCGTCAGAGCCCGTCAAAAACGTAGTTCTGGTAGGCCG 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 TGACCGTTGGGAGTTGCCTTCAGCGTCAGAGCCCGTCAAAAACGTAGTTCTGGTAGGCCG 128
Query 84 TACTGGGAATGGAAAAAGCGCCACTGGAAATTCCATCATCGGAAGAAAGGTTTTCGAGTC 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 TACTGGGAATGGAAAAAGCGCCACTGGAAATTCCATCATCGGAAGAAAGGTTTTCGAGTC 188
Query 144 AAAATATCAAGCTGTTGGTGTTACCACAAAATGTAAGACATTTAGAGCTGTGACACCGGA 203
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 189 AAAATATCAAGCTGTTGGTGTTACCACAAGATGTAAGACATTTAGAGCTGTGACACCGGA 248
Query 204 TGGCCCGATAATCAATGTGATTGACACTCCTGGTCTCTTCGACCTGGCCGTGTCCGCAGA 263
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 249 TGGCCCCATAATCAATGTGATTGACACTCCTGGTCTCTTCGACCTGGCCGTGTCCGCTGA 308
Query 264 GTTTATTAGTAAGGAAATCGTCAACTGCCTTATTCTTGCTAGAGAAGGGCTACATGCCGT 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 309 GTTTATTAGTAAGGAAATCGTCAACTGCCTTATTCTTGCTAGAGAAGGGCTACATGCTGT 368
Query 324 CGTGTTAGTTCTATCCATGTCGACTCGGATTTCACAAGAGGAAGAAAATGCACTTTGTAC 383
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 369 GGTGTTAGTTCTATCCTTGTCGACTCGGATTTCACAAGAGGAAGAAAACGCACTTTGTAC 428
Query 384 GTTACAAATGCTGTTCGGGGCTTCAATCGTTGACTATTTGATCGTTGTATTCACTTGCGG 443
|||||| ||| ||||||||| | ||||||||||||||||||||||||||||||||| ||
Sbjct 429 GTTACAGATGTTGTTCGGGGGTAAAATCGTTGACTATTTGATCGTTGTATTCACTTGTGG 488
Query 444 TGATATGTTGGAAGAGCGGAATATGACACTAGAGGATTATTTGTCCAATGGTTGCCCTGA 503
||||||||||||||| || |||||||| |||| ||||||||||||||||||||||||||
Sbjct 489 TGATATGTTGGAAGATCGAAATATGACTTTAGAAGATTATTTGTCCAATGGTTGCCCTGA 548
Query 504 ATTTCTAAAGAAAGTTCTCAGACTATGTGGAGGCAGAAGGGTTGTATTTGATAACCGAAC 563
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 ATTTCTAAAGAATGTTCTCAGACTATGTGGAGGCAGAAGGGTTGTATTTGATAACCGAAC 608
Query 564 GGAAGATGAAGAG-GTGAAGGCTAAGCAAGTCCATG-AGCTTCTCGTCCATGTCGCAGCG 621
| ||||||||| | |||||||||||||||||||| | ||||||| |||||||||||||||
Sbjct 609 GAAAGATGAAG-GTGTGAAGGCTAAGCAAGTCCA-GCAGCTTCTGGTCCATGTCGCAGCG 666
Query 622 ATCGAAA-GTGAAACTGGTGGGAATCCATTTACGGACACGATGCACCGTAGGATACAGGA 680
|| |||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 667 ATTGAAAAG-GAAACTGGTGGGAATCCCTTTACGGACACGATGCACCGTAGGATACAGGA 725
Query 681 AGAGGCTGAAAGGGTTAAAAGGGAAGAGAAGGAAATTGAAGaaaaaaaCATTGCAGAGGA 740
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 726 AGAGGCTGCAAGGGTTAAAAGGGAAGAGAAGGAAATTGAAGAAAAAAACATTGCAGACGA 785
Query 741 AGAGAAAGCAAAGTTGAAGAAACAGCTCGACAAGTCGTATAGCCAAAATATGAACATGAT 800
|||||||||| ||||||||| ||| | |||| ||||||||||||||| |||||||||||
Sbjct 786 AGAGAAAGCAGCGTTGAAGAAGCAGTTAGACATGTCGTATAGCCAAAACATGAACATGAT 845
Query 801 GGCACAGATGATGGAGAGGATATTTAAAGAATCTGCGGCGGCAAATGAGAGACAAATGAA 860
|||| ||||||||||||||||||||||||| | || ||||| |||||||||||||||||
Sbjct 846 GGCATTGATGATGGAGAGGATATTTAAAGAAACAGCAGCGGCGAATGAGAGACAAATGAA 905
Query 861 TATGATGAAGGACTTTATGGAAATTTCAATTATCGGAAAGGATGCTCAGCGTAAAAGAGA 920
||||||||| |||||||||||||||||||| || ||||| |||||||| ||||||||||
Sbjct 906 TATGATGAAAGACTTTATGGAAATTTCAATAATAGGAAATGATGCTCATCGTAAAAGAGC 965
Query 921 TGAAGAGAAGCGGGAGCAGCAGGCAGCGAGGAAGCAGGAATGCAACATCTTGTGA 975
||||||||||| || ||| || || | || || |||||||||||| |||||
Sbjct 966 TGAAGAGAAGCAGG--CAG-AGA-AG--A--AA-CAAGAATGCAACATCCTGTGA 1011
Score = 126 bits (68), Expect = 3e-28
Identities = 68/68 (100%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGAAGATCAGAACACAACTGACCGTTGGGAGTTGCCTTCAGCGTCAGAGCCCGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGAAGATCAGAACACAACTGACCGTTGGGAGTTGCCTTCAGCGTCAGAGCCCGTC 60
Query 61 AAAAACGT 68
||||||||
Sbjct 61 AAAAACGT 68
> AT1G33910.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:12314904-12316258
FORWARD LENGTH=906
Length=906
Score = 209 bits (113), Expect = 3e-53
Identities = 301/392 (77%), Gaps = 12/392 (3%)
Strand=Plus/Plus
Query 173 AATGTAAGACATTTAGAGCTGTGACACCGGATGGCCCGATAATCAATGTGATTGACACTC 232
|||||||||||| || |||| ||||| ||||||| |||||||||||||||||||||||
Sbjct 134 AATGTAAGACATGTAAAGCTAAGACACTAGATGGCCAGATAATCAATGTGATTGACACTC 193
Query 233 CTGGTCTCTTCGACCTGGCCGTGTCCGCAGAGTT-TATTAGTAAGGAAATCGTCAACTGC 291
||||||||||||| || ||||||| | || || ||| | ||||| ||| |||| |||
Sbjct 194 CTGGTCTCTTCGATTTGTCCGTGTCTACGGA-TTATATGAACAAGGAGATCATCAATTGC 252
Query 292 CTTATTCTTGCTAGA-GAAGGGCTACATGCCGTCGTGTTAGTTCTATCCATGTCGACTCG 350
|||| || | || | |||| ||||||| || |||||||| ||||| || |||| |
Sbjct 253 CTTACCCTCACG-GATGGAGGGTTACATGCTGTGGTGTTAGTACTATCTGTGGGGACT-G 310
Query 351 G-ATTTCACAAGAGGAAGAAAATGCACTTTGTACGTTACAAATGCTGTTCGGG-GCTTCA 408
|||| | |||||||||| |||||| | |||||| | || || || | | |
Sbjct 311 ACATTTTAAAAGAGGAAGAGGCCGCACTTAACAAGTTACAGCTCCTTTTTGGCAG-TAAA 369
Query 409 ATCGTTGACTATTTGATCGTTGTATTCACTTGCGGTGATATGTTGGAAGAGCGGAAT-AT 467
|| |||||||||||| ||||| | |||||| | |||||| | |||||| || | || |
Sbjct 370 ATTGTTGACTATTTGGTCGTTCTCTTCACTGGTGGTGATGTTTTGGAAAAG-GAAAACAA 428
Query 468 GACACTAGAGGATTATTTGTCCA-ATGGTTGCCCTGAATTTCTAAAGAAAGTTCTCAGAC 526
|||||| || || |||||||||| | || |||||||||||| | |||| |||||| |||
Sbjct 429 GACACTTGACGACTATTTGTCCAGA-GGCTGCCCTGAATTTTTGAAGACAGTTCTTAGAT 487
Query 527 TATGTGGAGGCAGAAGGGTTGTATTTGATAAC 558
| ||||| || ||||||||| | ||| |||||
Sbjct 488 TGTGTGGCGGAAGAAGGGTTTTGTTTAATAAC 519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5