BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336460
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33890.1 | Symbols: | Avirulence induced gene (AIG1) family... 1393 0.0
AT1G33950.1 | Symbols: | Avirulence induced gene (AIG1) family... 174 1e-42
> AT1G33890.1 | Symbols: | Avirulence induced gene (AIG1) family
protein | chr1:12308284-12309686 REVERSE LENGTH=1005
Length=1005
Score = 1393 bits (754), Expect = 0.0
Identities = 888/952 (93%), Gaps = 12/952 (1%)
Strand=Plus/Plus
Query 1 ATGAATCATTGGGAACAGCCTTCAGCGTACAAAGCAGTCAAAAACATAGTTTTGGTCGGG 60
|||||||||| ||||||| |||||||||||||||| || ||||||||||||||||| |||
Sbjct 1 ATGAATCATTCGGAACAGGCTTCAGCGTACAAAGCGGTAAAAAACATAGTTTTGGT-GGG 59
Query 61 -CGTACCGGAAATGGAAAAAGCGCCACTGGAAACTCCCTCATTGGGAAAGACGTGTTTGT 119
||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 60 ACGTACCGGAAACGGAAAAAGCGCCACTGGAAACTCTCTCATCGGGAAAGACGTGTTCGT 119
Query 120 CTCAGAAGCGAAAGCAACAGGTGTTACCCAAACATGTCAGACATATAAAGCGGTAACACC 179
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 120 CTCAGAAGCGAAAGCAACAGGTGTTACCAAAACATGTCAGACATATAAAGCGGTGACACC 179
Query 180 AGCTGGCTCGAGGATCAACGTGATTGACACTCCCGGTCTATTCGATTTGTCGGTGTCTGC 239
|| ||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||
Sbjct 180 AGGTGGCTCGAGGATCAATGTGATTGACACTCCCGGTCTGTTCGATTTATCGGTGTCCGC 239
Query 240 TGAATTTATCAGTAAAGAAATCATCAATTGCCTTAGGCTGGCGGAAGGAGGATTACATGT 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 TGAATTTATCAGTAAAGAAATCATCAATTGCCTTAGGCTTGCGGAAGGAGGATTACATGT 299
Query 300 TGTAGTGTTAGTTCTATCCGTGAGAACTCGGATTACTCAAGAGGAAGAGAACACACTTAG 359
||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 300 TGTTGTGTTAGTTCTATCCGTGAGAACTCGGATAACTCAAGAGGAAGAGAATACACTTAG 359
Query 360 TACCTTGCTGGTCCTTTTC-GGAACTGAAATCCTTGACTATTTGATCGTTCTATTCACGG 418
||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |
Sbjct 360 CACCTTGCAGGTCCTTTTCGGGAA-TGAAATCCTTGACTATTTGATCGTTCTATTCACCG 418
Query 419 GAGGTGATGCGTTGGAAGAAAACAATCAAACACTGGACGATTATTTTCATCAAGGTTGCC 478
| ||||||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 419 GCGGTGATGAGTTGGAAGCAAACAACCAAACACTGGATGATTATTTTCATCAAGGTTGCC 478
Query 479 CCGACTTTCTTAAGACAGTTCTTGGTTTATGTGGCGATAGAAAGGTCATGTTTAATAATA 538
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 479 CCTACTTTCTTAAGACAGTTCTTGGTTTATGTGACGATAGAAAGGTCATGTTTAATAATA 538
Query 539 TGACTAAGGATAAACGCAAGAAGCTCGAGCAAGTCCAGCAGTTTCTTGCCCTTGTCGCAA 598
||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 539 TGACTAAGGATAAACACAAGAAGGTGGAGCAAGTCCAGCAGTTTCTTGCCCTTGTCGCAA 598
Query 599 AGGTTGAAGAGCACAATGATAGGAAA-CCGTTTAAAGGGAAAATGTACCGT-GAAATAAA 656
|||||||||||| |||||| |||||| ||||||| ||| |||||||||| | ||||||||
Sbjct 599 AGGTTGAAGAGCGCAATGA-AGGAAAACCGTTTAGAGGAAAAATGTACC-TAGAAATAAA 656
Query 657 GGAAGAGACTAAATGGCTTAAAGAA-CAGAAGAAGGCAGTGGAAGCTAGGAACCTTGGAG 715
|||||||||| ||||||||||| || |||||||||||||| |||||||| ||||||||||
Sbjct 657 GGAAGAGACTGAATGGCTTAAA-AAGCAGAAGAAGGCAGTTGAAGCTAGTAACCTTGGAG 715
Query 716 AAGCAGAGTTAGCGAAAATGAAGAAGGAGATACAAATGGAATATGACACGAGGATGAGCC 775
||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 716 AAGCAGAGTTAGCAAAAATGAAGAAGGAGCTACAAATGGAACATGACACGAGGATGAGCC 775
Query 776 AAATGGAAGAGATGGTGAAGAATACGCTAAAAGAGACTTCTGCTGCGCATGAGAGAATGG 835
|||||||||| |||||||| |||| |||||||||||||||||||||||| || |||||||
Sbjct 776 AAATGGAAGATATGGTGAAAAATATGCTAAAAGAGACTTCTGCTGCGCACGAAAGAATGG 835
Query 836 TTTTTATGCTAAATGAGAATCTCGAGAAGGCACAAAGACAAAACATAGATCTGCGCAAAG 895
||| |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 836 TTTCTATGCTAAATGAGAATCTCGAGAACGCACATAGAGAAAACATAGATCTGCGCAAAG 895
Query 896 -AGCATGATCATGAGCAAAAGAAGCGGATGCTGATTCAGCTTGGTTTTGGAG 946
| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 896 CA-CATGATCATGAGCAAAAGAAGCGGATGATGATTCAGCTTGGTTTGGGAG 946
> AT1G33950.1 | Symbols: | Avirulence induced gene (AIG1) family
protein | chr1:12333046-12339182 REVERSE LENGTH=936
Length=936
Score = 174 bits (94), Expect = 1e-42
Identities = 326/436 (75%), Gaps = 24/436 (6%)
Strand=Plus/Plus
Query 41 AAAACATAGTTTTGGTCGGGCGTACCGGAAATGGAAAAAGCGCCACTGGAAACTCCCTCA 100
||||||||||||| || || || || || ||||||||||| || || || ||| |||||
Sbjct 50 AAAACATAGTTTTAGTAGGCCGGACAGGGAATGGAAAAAGTGCGACAGGTAACAGCCTCA 109
Query 101 TTGGGAAAGACGTGTTTGTC-TCAGAA-GCGA-AAGCAACAGGTGTTACCCA--AACATG 155
|||| ||| | ||||||| | ||| || || | | || | ||||| | ||| || |||
Sbjct 110 TTGGAAAAAAGGTGTTTG-CTTCA-AAGGC-ACATGCTTCTGGTGTGA-CCATGAA-ATG 164
Query 156 TCAGACATATAAAGCGGTAACACCAGCTGGCTC-GAGGATCAACGTGATTGACACTCCCG 214
||||||| || || || ||| || ||| || | ||||| |||||||| ||||| |
Sbjct 165 TCAGACACATGGAGTTGTGACAAAAGATGG-TCACAAAATCAATGTGATTGATACTCCAG 223
Query 215 GTCTATTCGATTTGTCGGTGTCTGCTGAATTTATCAGTAAAGAAATCATCA-ATTGCCTT 273
|||| || || ||||| ||||| ||||| | ||| |||||||| || | | | || ||
Sbjct 224 GTCTGTTTGACTTGTCAGTGTCGGCTGAGTATATAAGTAAAGAGATTGTTAGA-TGTCTA 282
Query 274 AGGCTGGCGGAAGGA-GGATTACATGTTGTAG-TGTTAGTTCTATCCGTGAGAACTCGGA 331
| || || |||||| ||| |||||| ||| | | |||||| |||| | || ||||| |
Sbjct 283 ACTCTAGCAGAAGGAGGGA-TACATGCTGT-GCTCTTAGTTTTATCTGCAAGGACTCGAA 340
Query 332 TTACTCAAGAGGAAGAGAACACACTTAGTACCTTGCTGG-TCCT-TTTCGGAACTGAAAT 389
|||||||||||||||||||||||||||| ||||| | || || | ||| ||| | ||||
Sbjct 341 TTACTCAAGAGGAAGAGAACACACTTAGAACCTTACAGGCTC-TATTTGGGAG-TCAAAT 398
Query 390 CCTTGACTATTT-GATCGTTCTATTCACGGGAGGTGATGCGTTGGAAGAAAACAATCAAA 448
||||| ||| | | ||||| | ||||| || ||||| | | | ||||| ||| | |
Sbjct 399 TCTTGATTATGTCG-TCGTTGTTTTCACCGGTGGTGACGTGCTAGAAGAGTGCAAGGAGA 457
Query 449 CACTGGACGATTATTT 464
|||| || ||||||||
Sbjct 458 CACTAGAAGATTATTT 473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5