BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336471
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34050.1 | Symbols: | Ankyrin repeat family protein | chr1:... 627 7e-179
AT1G34046.1 | Symbols: | Ankyrin-repeat containing protein | c... 163 2e-39
> AT1G34050.1 | Symbols: | Ankyrin repeat family protein | chr1:12393495-12396006
FORWARD LENGTH=1722
Length=1722
Score = 627 bits (339), Expect = 7e-179
Identities = 470/533 (88%), Gaps = 10/533 (2%)
Strand=Plus/Plus
Query 244 AACATTGGGAATA-CATCTGA--AT-ATAAGATGCAAATGTTTGAAGCACC-TCCAAGCA 298
|||| ||||| || |||||| || | |||||||| || |||||| | || || ||| |
Sbjct 1090 AACA-TGGGAGTATTATCTGAGTATAAGAAGATGCAGATATTTGAAACGCCTTCAAAG-A 1147
Query 299 GCGAAAGTAAGATGCATGCAGAAGCATTACAGAACGCAAGAAACACGATAACAATAGTTG 358
| |||||||| ||||||||||||||||| | ||||||||| ||||| || ||||||||||
Sbjct 1148 GGGAAAGTAAAATGCATGCAGAAGCATTGCTGAACGCAAGGAACACAATCACAATAGTTG 1207
Query 359 CAGTTTTGATTGCCTCGGTCGCCTTCACTTGTGGCATAAATCCCCCCGGCGGTGTCTATC 418
||||||||||||||||||| |||||||| || || |||||||| || || ||||||||||
Sbjct 1208 CAGTTTTGATTGCCTCGGTTGCCTTCACCTGCGGTATAAATCCTCCTGGTGGTGTCTATC 1267
Query 419 AAGATGGTCCTTACAAAGGTAAATCAACTGCAGGG-ACAACGTTAGCCTTCAAAATCTTT 477
|||| || || |||||||| ||||||||||| ||| | |||||| |||||| || | |||
Sbjct 1268 AAGAAGGACCCTACAAAGGAAAATCAACTGC-GGGAAGAACGTTGGCCTTCCAAGTGTTT 1326
Query 478 TCCATAAGCAACAACATCGCATTGTTCACATCCCTATGCATTGTGATTCTTCTAGTAAGC 537
|| |||||||||||||||||||||||||||||||| |||||||| || ||||| || |||
Sbjct 1327 TCTATAAGCAACAACATCGCATTGTTCACATCCCTTTGCATTGTAATCCTTCTTGTCAGC 1386
Query 538 ATTATACCTTACAGGACGAGGCCACTCATGAACTTCTTAAAACTAACACATAGGATGCTT 597
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||
Sbjct 1387 ATTATACCTTACAGGACGAGACCACTCAAGAACTTCTTAAAACTAACACATAGGATACTT 1446
Query 598 TGGGTAGCTGTGGCATCCATGGCACTCGCTTATGTTGCTGCAGCTTCCACAATCATACCG 657
||||| |||||||||||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 1447 TGGGTGGCTGTGGCATCCATGGCACTCGCTTATGTTTCCGCAGCTTCCATAATCATACCG 1506
Query 658 CATATCGAAGGAACAAGATGGTTCTTCACAACTGTTCTTTCTATCTCTACCGTGATGCTG 717
||| ||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1507 CATGTCGAAGGAAAAAGATGGTTGTTCACAACTGTTCTTTCTATCTCTACCTTGATGCTC 1566
Query 718 GGAGGTTTGTTTGCGTTTATGACCTATAAACTGTTCAGACACTGGTTGA-GAA 769
|||||| ||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 1567 GGAGGTCTGTTTGCGTTTATGACCTATAAAGTCATCAGACACTGGTTGAAGAA 1619
> AT1G34046.1 | Symbols: | Ankyrin-repeat containing protein |
chr1:12388595-12389447 FORWARD LENGTH=560
Length=560
Score = 163 bits (88), Expect = 2e-39
Identities = 113/124 (91%), Gaps = 5/124 (4%)
Strand=Plus/Plus
Query 109 GTGATAGTCTGCATCACTTATGATACAACAATAGATATCTCTGC-T-AAAAACACTCGAG 166
|||||| ||| |||||| |||||||||||||||| |||||| | | |||||||||||||
Sbjct 340 GTGATACTCTACATCAC-TATGATACAACAATAG--ATCTCTACGTCAAAAACACTCGAG 396
Query 167 GACTGGAAGCGGTTGATCTTATCAATGTCGATGATGAAGATTATGATAAGATATCCGGCT 226
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 397 GACTGGAAGCGGTTGATCTTATCAATGTCGACCATGAAGATTATGGTAAGATATCCGGCT 456
Query 227 GGCT 230
||||
Sbjct 457 GGCT 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43502771302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5