BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336483
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34190.1 | Symbols: anac017, NAC017 | NAC domain containing ... 1519 0.0
AT1G34180.2 | Symbols: anac016, NAC016 | NAC domain containing ... 636 0.0
> AT1G34190.1 | Symbols: anac017, NAC017 | NAC domain containing
protein 17 | chr1:12451451-12454142 FORWARD LENGTH=2180
Length=2180
Score = 1519 bits (822), Expect = 0.0
Identities = 1022/1113 (92%), Gaps = 35/1113 (3%)
Strand=Plus/Plus
Query 1 ATGGCGGATTCTTCACCTGATTCGTGTTTCAAAGGAGGCAAATTTAGTGCTCCAGGTTTT 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 279 ATGGCGGATTCTTCACCCGATTCGTGTTTCAAAGGAGGCAAATTTAGTGCTCCAGGGTTT 338
Query 61 CGATTTCATCCGACTGATGAAGAGCTTGTGATGTATTATCTGAAGAGGAAGATTTGTAGG 120
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 339 CGATTTCATCCAACTGATGAAGAGCTTGTGATGTATTATTTGAAGAGGAAGATTTGTAGG 398
Query 121 AAGAGGCTTAGAGTTAATGTTATCGGCGTTGTTGATGTTTATAAAATGGATCCTGAAGAA 180
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 399 AAGAGGCTTAGAGTTAATGTTATCGGTGTTGTTGATGTTTACAAAATGGATCCTGAGGAA 458
Query 181 TTGCCTGGTCAATCGATGTTGAAGACGGGAGATAGACAGTGGTTCTATTTCACTCCAAGG 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 TTGCCTGGTCAATCAATGTTGAAGACGGGAGATAGACAGTGGTTCTATTTCACTCCAAGG 518
Query 241 AGTAGGAAGTATCCGAACGCAGCTAGGTC-AAGTAGAGGAACTGAAACTGGGTATTGGAA 299
|||||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 519 AGTAGGAAGTATCCAAACGCAGCTAGGTCTAA-TAGAGGAACTGAAAATGGGTATTGGAA 577
Query 300 GGCGACGGGGAAGGATCGAGTTATTGAGTATAATTCAAGATCGGTTGGACTCAAGAAGAC 359
||| || |||||||||||||| |||||||||||||| |||||||| ||||| || |||||
Sbjct 578 GGCTACAGGGAAGGATCGAGTCATTGAGTATAATTCTAGATCGGTGGGACTTAAAAAGAC 637
Query 360 TCTTGTTTTCTATAGAGGTCGGGCTCCTAATGGTGAGCGGACTGATTGGGTGATGCATGA 419
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 638 TCTTGTTTTCTATAGAGGCCGGGCTCCTAGTGGTGAGCGGACTGATTGGGTGATGCATGA 697
Query 420 GTATACGATGGATGAAGATGAACTAGGGAGATGTAAGAACCCTCAGGATTACTATGCTCT 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 698 GTATACGATGGATGAAGATGAACTAGGGAGATGTAAGAACCCTCAGGAGTACTATGCTCT 757
Query 480 TTATAAGTTGTTTAAGAAAAGTGGGGCTGGTCCTAAAAATGGTGAACAGTATGGTGCTCC 539
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 758 TTATAAGTTGTTCAAGAAAAGTGGGGCTGGTCCTAAGAATGGTGAACAGTATGGTGCTCC 817
Query 540 GTTCCAAGAAGAGGAATGGGTTGATGATGATAATGAAGATGAGAACGCTATTGCTGTACC 599
||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
Sbjct 818 GTTTCAAGAAGAGGAATGGGTTGATGATGATAATGAAGATGTGAATGCTATTGCTGTAGC 877
Query 600 -G-G--AG--CAACCTGTGGTTCGTTATGAAGATACTCGTCGTGTGGATGGGAGGAGACT 653
| | || |||||||||||||||||||| ||| ||||||||||||||| |||||||||
Sbjct 878 TGTGCCAGAGCAACCTGTGGTTCGTTATGAGGATGCTCGTCGTGTGGATGAGAGGAGACT 937
Query 654 TTTCAATCCTGTTAGTCTTCAGTTAGAGGATATTGATGAGCTTCTCAATGGAATCCCAAA 713
||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 938 TTTTAATCCTGTTATTCTTCAGTTAGAGGATATCGATGAGCTTCTCAATGGAATCCCTAA 997
Query 714 TGCACCTGGGGTTCCTCCAAGATGTATTCCTCAGGTGAATAGTGAAGAAGAGCTGCAGAG 773
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 TGCACCTGGTGTTCCTCAAAGATGTATTCCTCAGGTGAATAGTGAAGAAGAGCTGCAGAG 1057
Query 774 CACATTGATGAATAATTCTGCTAGAGAGTTCTTGCCAAACGATCAGCCATACAACAGGCC 833
|| ||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1058 TACGTTGGTGAATAATTCTGCTAGAGAGTTCTTGCCAAACGGTCAGCAATACAACAGGCC 1117
Query 834 TTCAAGTTTTGACTCATTAGAGACCGCTGAGGTCACGTCAGCTCCCAAGACCTCTGGTAT 893
||||||||||||||||||||||||||||||||||| | || | | | ||
Sbjct 1118 CTCAAGTTTTGACTCATTAGAGACCGCTGAGGTCAC--C---TC--A-G-C-TC------ 1161
Query 894 AGCACCTCTGGTGTTTGAGAAGGAGGATTACATTGAAATGGATGATCTTCT---GATCCC 950
| |||||||||||||||||| |||| ||||||||||||||||||||| ||||||
Sbjct 1162 --C---TCTGGTGTTTGAGAAGGAAGATTTCATTGAAATGGATGATCTTCTTCTGATCCC 1216
Query 951 TGAACTT-GGAGCTTCCTCAACCGAGAAAGCTGTACAGTTATCGAACCATGGTGGATTCG 1009
|||| || |||||||| ||||| |||||||| | |||||| ||||||||||||| |||||
Sbjct 1217 TGAA-TTCGGAGCTTCTTCAACTGAGAAAGCCGCACAGTTCTCGAACCATGGTGAATTCG 1275
Query 1010 GCGATTTTGACGAGTTTGACCAATTGTTCCATGATGTTTCCATGTCTTTGGATATGGAAC 1069
||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1276 ACGATTTTAATGAGTTTGACCAATTGTTCCATGACGTTTCCATGTCTTTGGATATGGAAC 1335
Query 1070 CTATTGATCAGGGA-CTTCTACGGATCTGTCTT 1101
|||||||||||||| ||||| | |||||||||
Sbjct 1336 CTATTGATCAGGGAACTTCTGCAAATCTGTCTT 1368
Score = 797 bits (431), Expect = 0.0
Identities = 503/538 (93%), Gaps = 4/538 (1%)
Strand=Plus/Plus
Query 1108 CAATTCCTTTATCAACAGTTCCAGGACCAGACTCCCGAGAACCAGCTGGACAACATCACG 1167
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1410 CAACTCCTTTATCAACAGTTCCAGGACCAGACTCCCGAGAACCAGCTGAACAACATCATG 1469
Query 1168 GATCCTAGTACAACCCTCGATCAATTCACTAACGATATATGGTTCCAAGATGATCAAGCC 1227
|||||||||||||| ||| ||||| |||||| |||||| |||||| | |||||||| |||
Sbjct 1470 GATCCTAGTACAACTCTCAATCAAATCACTAGCGATATTTGGTTCGAGGATGATCAGGCC 1529
Query 1228 ATTCTCTTTGATCAACAACAATCTTTTTCTGGAGCATTTGCTTCACCCTCATCAGGTGTA 1287
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1530 ATTCTATTTGATCAACAACAATCCTTTTCTGGAGCATTTGCTTCACCCTCATCAGGTGTG 1589
Query 1288 ATGCCCGATTCTACCAATCCTTCTATGAGTGTGAATGCCCAAGGCCAGGAACA-CCAAAA 1346
||||| ||||| ||||||||| ||||||||||||||||||||||||| ||| | ||||||
Sbjct 1590 ATGCCTGATTCCACCAATCCTACTATGAGTGTGAATGCCCAAGGCCATGAA-ATCCAAAA 1648
Query 1347 TGGTGGTGGACCAACTAGCCAGTTCTCATCGGCTCTGTGGGCATTAATGGACTCAATACC 1406
|||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1649 TGGTGGTGGAACAACAAGCCAGTTCTCATCGGCTTTGTGGGCATTAATGGACTCAATACC 1708
Query 1407 TTCAACGCCAGCCTCTGCGTGTGAGGGTCCTCTTAACCGAACCTTTGTACGTATGTCTAG 1466
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1709 TTCAACGCCAGCCTCTGCGTGTGAGGGTCCCCTTAACCGAACCTTTGTACGTATGTCTAG 1768
Query 1467 TTTCAGCCGTATGAGGTTCAATGGAAAGGCTAATGTAACGCCAGTGACTACTACCATAGC 1526
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1769 CTTCAGCCGTATGAGGTTCAATGGAAAGGCTAATGGAACGCCAGTGAGTACTACCATAGC 1828
Query 1527 AAAGAAAGGTATCAGAAACAGAGGTTTTCTTCTCTTATCAATCGTGGGTGCCTTGTGTGC 1586
|||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1829 AAAGAAGGGTATTAGAAACAGAGGTTTTCTTCTATTATCAATCGTGGGTGCTTTGTGTGC 1888
Query 1587 CATCTTCTGGGTGTTCATAGCCACAGTTCGAGTCTCAGGTAGAAACGTCTTCTCTTGA 1644
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1889 CATCTTCTGGGTGTTGGTAGCCACAGTTCGAGTCTCAGGTAGAA--GTCTTCTCTTGA 1944
> AT1G34180.2 | Symbols: anac016, NAC016 | NAC domain containing
protein 16 | chr1:12448726-12451287 FORWARD LENGTH=1898
Length=1898
Score = 636 bits (344), Expect = 0.0
Identities = 481/546 (88%), Gaps = 14/546 (3%)
Strand=Plus/Plus
Query 188 GTCAATCGATGTTGAAGACGGGAGATAGACAGTGGTTCTATTTCACTCCAAGGAGTAGGA 247
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 224 GTCTATCGATGTTGAAGACGGGAGATAGACAGTGGTTCTTTTTCACTCCAAGGAATAGGA 283
Query 248 AGTATCCGAACGCAGCTAGGTCAAGTAGAGGAACTGAAACTGGGTATTGGAAGGCGACGG 307
||||||| ||||||||||||||||||||||| |||| |||||| |||||||||||||| |
Sbjct 284 AGTATCCTAACGCAGCTAGGTCAAGTAGAGGTACTGCAACTGGTTATTGGAAGGCGACAG 343
Query 308 GGAAGGATCGAGTTATTGAGTATAATTCAAGATCGGTTGGACTCAAGAAGACTCTTGTTT 367
| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 344 GAAAGGATCGAGTCATTGAGTACAATTCAAGATCTGTTGGACTCAAGAAGACTCTTGTTT 403
Query 368 TCTATAGAGGTCGGGCTCCTAATGGTGAGCGGACTGATTGGGTGATGCATGAGTATACGA 427
||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| || |
Sbjct 404 TCTATAGAGGTCGTGCTCCTAATGGTGAGAGAACTGACTGGGTGATGCATGAGTACACTA 463
Query 428 TGGATGAAGATGAACTAGGGAGATGTAAGAACCCTCAGGATTACTATGCTCTTTATAAGT 487
|||||||||| || |||||||||||||||||| || |||| || |||||||||||||||
Sbjct 464 TGGATGAAGAAGAGCTAGGGAGATGTAAGAACGCTAAGGAGTATTATGCTCTTTATAAGC 523
Query 488 TGTT-TAAGAAAAGTGGGGCTGGTCCTAAAAATGGTGAACAGTATGGTGCTCCGTTCCAA 546
| || |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 524 T-TTATAAGAAGAGTGGGGCTGGTCCTAAGAATGGTGAACAGTATGGTGCTCCGTTCCAA 582
Query 547 GAAGAGGAATGGGTTGAT-GATGATAATGAAGATG-AGA-ACGCTATTGCTGTACCGGAG 603
||||| |||||||||||| | ||||| |||||||| ||| | | | | |||||||||||
Sbjct 583 GAAGAAGAATGGGTTGATAG-TGATAGTGAAGATGCAGATA-G-TGTCGCTGTACCGGAT 639
Query 604 CAACCTGTGGTTCGTTATGAAGA-TACTCGTCGTGTGGATGGGAGGAGACTTTT-CAATC 661
| || ||||| |||||||| || | || | ||||||||| | | | |||| |||||
Sbjct 640 TATCCCGTGGTCCGTTATGA-GAATGGTCCTTGTGTGGATGATACTAAA-TTTTGCAATC 697
Query 662 CTGTTAGTCTTCAGTTAGAGGATATTGATGA-GCTTCTCAATGGAATCCCAAATGCACCT 720
|||| | |||||||||||||||||||| || ||||||||||| ||||||| |||||||
Sbjct 698 CTGTCAAACTTCAGTTAGAGGATATTGA-GAAGCTTCTCAATGAAATCCCAGATGCACCC 756
Query 721 GGGGTT 726
||||||
Sbjct 757 GGGGTT 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81224481810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5