BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336484
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34200.1 | Symbols: | Glyceraldehyde-3-phosphate dehydrogen... 1524 0.0
> AT1G34200.1 | Symbols: | Glyceraldehyde-3-phosphate dehydrogenase-like
family protein | chr1:12455708-12457412 FORWARD LENGTH=1621
Length=1621
Score = 1524 bits (825), Expect = 0.0
Identities = 983/1061 (93%), Gaps = 4/1061 (0%)
Strand=Plus/Plus
Query 1 ATGTCCGGCGATAACCAGATCCGATTCGGACTCTTAACCTGCAAAAACATAGTCCGCAAA 60
|||||||| ||||||||||||||| |||||||||||| ||||| ||||| ||||||||||
Sbjct 86 ATGTCCGGTGATAACCAGATCCGAATCGGACTCTTAAGCTGCACAAACAAAGTCCGCAAA 145
Query 61 CTCTCTCGAGCCATAAACCTCTCTCCAAACGCTACCATCTCCGCCATAGCCACCACAAGC 120
||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 146 CTCTCTCGAGCTATAAATCTCTCTCCAAACGCTACTATATCCGCCATAGCCACCACAAGC 205
Query 121 TCCATCGAAGAAGCAAAATCATTTACTAAATCCAACAATTTCCCTCCGAATACAAAGA-T 179
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 206 TCCATCGAAGAAGCAAAATCATTTGCTAAATCCAACAATTTCCCTCCGAATACAAA-ACT 264
Query 180 TCACATCTCCTACGATTCACTTCTAGAAGATCCCGACGTTGACGCCGTCTATTTCCCTAT 239
|||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 265 CCACAGCTCCTACGAGTCACTTCTAGAAGATCCCGACGTCGACGCCGTCTATTTCCCTAT 324
Query 240 CCCCACTCGCCTCCACCTCGAGTGGGCTACACGCGCCGCTCGTAAGGGTAAGCATATACT 299
|||||||||||||||| ||||||||||||||| ||||||| ||||||||| ||||||||
Sbjct 325 CCCCACTCGCCTCCACGTCGAGTGGGCTACACTCGCCGCTATTAAGGGTAAACATATACT 384
Query 300 CCTTGATAAGCCAGTTGCTTTAAACGTATCTGAGTTTGATCAGATCGTTGAAGCTTGTGA 359
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 385 CCTTGATAAGCCTGTTGCTTTAAACGTAGCTGAGTTTGATCAGATCGTTGAAGCTTGTGA 444
Query 360 GGTTAATGGTGTTCAATTTATGGATGGAACTCAGTGGATTCATAATCCTAGAACGTATAA 419
||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct 445 GGTTAATGGTGTTCAATTTATGGATGGAACTCAGTGGATGCATAGCCCTAGAACGGATAA 504
Query 420 GATTAAGGAATTTGTCAACGATTTTGAGAGTTTTGGTCAGATTAAATCTGTACATAGTTG 479
|||||| |||||||| || ||||| |||||||||||||||||||||||||| |||||||
Sbjct 505 GATTAAAGAATTTGTGAATGATTTAGAGAGTTTTGGTCAGATTAAATCTGTGTATAGTTG 564
Query 480 TTTCTCATTTGCAGCGAATGATGATTTCTTAAAACATGATATTCGTGTAAAGCCTGGTCT 539
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 TTTCTCATTTGCTGCGAGTGATGATTTCTTAAAACATGATATTCGTGTAAAGCCTGGTCT 624
Query 540 TGATGGGCTTGGAGCTCTTGGTGATGCTGGATGGTATACGATTCAAGCGATTCTTCTTGC 599
|||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 625 TGATGGACTTGGAGCTCTCGGTGATGCTGGATGGTATACGATCCAAGCGATTCTTCTTGT 684
Query 600 CAACGACTTTAAACTTCCGAAAACCGTTACTGCTTTACCCGGTTATGTGTTAAACGATGT 659
||| |||||||||||||||| |||||||||||||| |||||| ||| ||||||||||
Sbjct 685 TAACAACTTTAAACTTCCGAAGACCGTTACTGCTTTGTCCGGTTCTGTTTTAAACGATGC 744
Query 660 GGGAATCGTTCTTTCTTGTGGTGCGTTGTTTGATTGGGAAGAAGGGAT-AAGTGCAACGA 718
||| || ||||||||||||||||||||||||||||||||||| ||| | || ||||||||
Sbjct 745 GGGGATTGTTCTTTCTTGTGGTGCGTTGTTTGATTGGGAAGATGGGGTCAA-TGCAACGA 803
Query 719 TGTACTGTTCTTTTTTGGCGAATTTAACTATGGAGATAACTGCGATTGGTACGAAAGGTA 778
| ||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 804 TTTACTGTTCTTTCTTGGCGAATTTGACGATGGAGATAACTGCGATCGGTACGAAAGGTA 863
Query 779 CTCTTCGTGTTCATGATTTTGTTATACCGTATCGGGAAACCGAGGCTGCGTTTACTACGA 838
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
Sbjct 864 GTCTTCGTGTTCATGATTTTGTTATACCGTATATGGAAACCGAGGCTGTGTTTACTACAA 923
Query 839 GTGCTAGAGGTTGTGTTAGTGAGCATAAAGTTATGACTGAGCTTCCACAAGAGGCGTGTA 898
||| | |||||||||||||||| |||||||| |||||||||||| |||||||||||||||
Sbjct 924 GTGGTGGAGGTTGTGTTAGTGAACATAAAGTAATGACTGAGCTTTCACAAGAGGCGTGTA 983
Query 899 TGGTTATAGAGTTTGCTCGGTTGGTTGGAGAAATCAAAAACAGAGGAGCTAAACCGGATG 958
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 TGGTTATGGAATTTGCTCGGTTGGTTGGAGAAATCAAAAACAGAGGAGCTAAACCGGATG 1043
Query 959 GGTTTTGGTTGAGCATTAGCCGGAAGACGCAGCTGCTTGTTGATGCCGTGAAAGAGTCGA 1018
|||||||| |||| |||||||||| |||||| ||||||||||||| |||||||||||||
Sbjct 1044 GGTTTTGGATGAGGTTTAGCCGGAATACGCAGTTGCTTGTTGATGCTGTGAAAGAGTCGA 1103
Query 1019 TTGATAGTAACCTTGAACCGGTTTTTCTCTCCGGCCGGTGA 1059
|||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1104 TTGATAATAACCTTGAACCGGTGTTTCTCTCCGGCCGGTGA 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5