BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336488
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62470.2 | Symbols: MYB96 | myb domain protein 96 | chr5:250... 230 1e-59
AT3G47600.1 | Symbols: MYB94, ATMYBCP70, ATMYB94 | myb domain p... 213 1e-54
AT1G08810.1 | Symbols: MYB60, AtMYB60 | myb domain protein 60 |... 134 1e-30
> AT5G62470.2 | Symbols: MYB96 | myb domain protein 96 | chr5:25078991-25081101
REVERSE LENGTH=1745
Length=1745
Score = 230 bits (124), Expect = 1e-59
Identities = 131/134 (98%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGACCATGGACACCAGAG 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 244 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGGCCATGGACACCAGAG 303
Query 61 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 363
Query 121 CCAACTA-ACACAG 133
||||| | ||||||
Sbjct 364 CCAAC-ACACACAG 376
> AT3G47600.1 | Symbols: MYB94, ATMYBCP70, ATMYB94 | myb domain
protein 94 | chr3:17539338-17541230 REVERSE LENGTH=1486
Length=1486
Score = 213 bits (115), Expect = 1e-54
Identities = 127/133 (95%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGACCATGGACACCAGAG 60
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 196 ATGGGAAGACCACCATGCTGTGACAAGATTGGAGTGAAGAAAGGACCATGGACACCAGAG 255
Query 61 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 GAAGATATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTG 315
Query 121 CCAACTAACACAG 133
|| ||| ||||||
Sbjct 316 CCTACTCACACAG 328
> AT1G08810.1 | Symbols: MYB60, AtMYB60 | myb domain protein 60
| chr1:2819065-2820395 REVERSE LENGTH=1123
Length=1123
Score = 134 bits (72), Expect = 1e-30
Identities = 122/145 (84%), Gaps = 7/145 (5%)
Strand=Plus/Plus
Query 1 ATGGGAAGACCACCTTGCTGTGAAAAGAT-TGGAGTGAAGAAAGGACCATGGACACCAGA 59
||||| || || || |||||||| ||||| ||| | ||||||||||||||||| || ||
Sbjct 67 ATGGGTAGGCCTCCATGCTGTGACAAGATAGGGA-TCAAGAAAGGACCATGGACTCCTGA 125
Query 60 GGAAGACATCA-TCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTG 118
||||| |||| |||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 126 AGAAGATATCATTCTT-GTTTCTTACATTCAAGAACATGGTCCTGGAAACTGGAGATCAG 184
Query 119 T-CCCAACTAACACAGTGCTTATTG 142
| |||| | ||||| | | ||||||
Sbjct 185 TTCCCACC-AACACTGGG-TTATTG 207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23157941767
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5