BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336503
Length=1737
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35540.1 | Symbols: ARF14 | auxin response factor 14 | chr1:... 1166 0.0
AT1G34410.1 | Symbols: ARF21 | auxin response factor 21 | chr1:... 1109 0.0
AT1G34390.1 | Symbols: ARF22 | auxin response factor 22 | chr1:... 1085 0.0
AT1G35520.1 | Symbols: ARF15 | auxin response factor 15 | chr1:... 1059 0.0
AT1G35240.1 | Symbols: ARF20 | auxin response factor 20 | chr1:... 1037 0.0
AT1G34310.1 | Symbols: ARF12 | auxin response factor 12 | chr1:... 1020 0.0
AT1G43950.1 | Symbols: ARF23 | auxin response factor 23 | chr1:... 586 2e-166
AT1G35545.1 | Symbols: | other RNA | chr1:13110517-13112832 RE... 172 8e-42
> AT1G35540.1 | Symbols: ARF14 | auxin response factor 14 | chr1:13108634-13111700
FORWARD LENGTH=1818
Length=1818
Score = 1166 bits (631), Expect = 0.0
Identities = 908/1038 (87%), Gaps = 33/1038 (3%)
Strand=Plus/Plus
Query 709 AGGTCAAGTCAATTTATTGTCAATTACGATAAATTCTTAGACGCCGTAAACAATAAGTTC 768
|||||||||||||||||||||| |||||| ||||||||||||| || ||||||||||||
Sbjct 805 AGGTCAAGTCAATTTATTGTCAGTTACGACAAATTCTTAGACGTTGTGAACAATAAGTTC 864
Query 769 AATGTCGGGTCAAGATTTACAATGCGGTTTGAGGAAGAAAATTTCTCTGAAAGAAGATAT 828
|||||||| ||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 865 AATGTCGGTTCAAGATTTACAATGCGGTTTGAGGGTGATGATTTCTCTGAAAGAAGATCT 924
Query 829 TTTGGGACAATTATTGGAGTTAGTGATTTCTCTCCTCATTGGAAATGTTCAGAATGGCGT 888
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 925 TTTGGGACAATTATTGGAGTTAGTGATTTCTCTCCTCATTGGAAGTGTTCAGAGTGGCGC 984
Query 889 AGCTTAAAAGTGCAGTGGGATGAATTTGCATCATTTCCGAGACCTGATAAAGTTTCCCCA 948
|||||| ||||||||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct 985 AGCTTAGAAGTGCAGTGGGATGAATTTGCATCATTTCCGAGACCAAACCAAGTTTCACCA 1044
Query 949 TGGGAAATAAAACATTCAACGCCTTCGTCAAATGTTCTCCCG-TCATCTATGCTTAAGAA 1007
||||| || |||||| |||||||| |||||||||| ||| | |||||| | || |||||
Sbjct 1045 TGGGACATCGAACATTTAACGCCTTGGTCAAATGTT-TCCAGGTCATCTTTTCTCAAGAA 1103
Query 1008 CAAACGTTCACGAGAAGTTAATGAAATCGGTTCTTCATCATCACACCTCTTGCCTCCTAT 1067
||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1104 CAAGCGTTCACGAGAAGTTAATGAAATCGGTTCTTCCTCATCACATCTCTTGCCTCCTAC 1163
Query 1068 ATTGACACAAGGACAAGAAATTGGACAACCAAGCATGACCTCCCCAATGAATGTTCCTCT 1127
||||||||||||||||||||||||||||| ||||||| || |||| |||||| || ||||
Sbjct 1164 ATTGACACAAGGACAAGAAATTGGACAACAAAGCATGGCCACCCCGATGAATATTTCTCT 1223
Query 1128 TAGTTACCGTGATGCAATTGAAGATGAT-TCGACTCCTTCTAGGTTGCTAATGAGCTACT 1186
| |||| |||||| | |||||||| | | |||||||||||| |||||||||||||||
Sbjct 1224 TCGTTATCGTGATATTACTGAAGATGCTAT-GACTCCTTCTAGATTGCTAATGAGCTACC 1282
Query 1187 CTGTCCAGAC-AATGCCCCGACTAAATTACAATAACGATCAAATAGTTACACCAATAGAA 1245
||||||| || |||| || ||||||||||||||| | | |||||||||||||||
Sbjct 1283 CTGTCCA-ACCAATGGCCAAACTAAATTACAATAATG-TG-----GTTACACCAATAGAA 1335
Query 1246 GGAAATATAACAAACAATGGAGGCGCTAGTTGTAGAGT-GTTTGGAGTCTCTCTTGCCAC 1304
| ||||||||||| ||||| || |||||||| ||| || ||||||||||||||| |||||
Sbjct 1336 GAAAATATAACAACCAATGCAGTCGCTAGTTTTAG-GTTGTTTGGAGTCTCTCTGGCCAC 1394
Query 1305 TCCTCCAGTGATCAAAGATCCCATTGAACAAATTGACTCAGATCCAAACTTAGAGATTTC 1364
|||| | ||||||||||||||| |||||||||||| | | || ||||||||
Sbjct 1395 TCCTTCGGTGATCAAAGATCCCGTTGAACAAATTG-----G--C-----TTGGAGATTTC 1442
Query 1365 TAAACTTTCTCAAGAGAAAATTTTTGGTCTAGGCCAAAT---GAGATCAACAAGAGAGAT 1421
|| |||| |||| || |||| ||||||| | ||||||| ||||||| ||| ||||||
Sbjct 1443 TAGACTTACTCAGGAAAAAAAGTTTGGTCAAAGCCAAATTTTGAGATCACCAACAGAGAT 1502
Query 1422 CCAAAGCAAGCAGTTGAGTTCTACCAGAACCTGTACCAAAGTTCAAATGCATGGTGTAAC 1481
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1503 CCAAAGCAAGCAGTTCAGTTCTACCAGAACTTGTACCAAAGTTCAAATGCAAGGTGTAAC 1562
Query 1482 ACTAGGAAGAGCTCTGGATTTAAGTGTTCTTAACGGATATGATCAGCTGATACTGGAATT 1541
| ||||||||||| ||||||||||||||||||| |||||||||||| | ||||| |||||
Sbjct 1563 AATAGGAAGAGCTGTGGATTTAAGTGTTCTTAATGGATATGATCAGTTAATACTAGAATT 1622
Query 1542 AGAGAAACTCTTTGATCTCAAAGGCCAGTTGCAAAAC-CGCAACCAATGGGAAATAGTTT 1600
||||| ||||| |||||||||||||| |||||| | ||||||||||||||||||| ||
Sbjct 1623 GGAGAAGCTCTTCGATCTCAAAGGCCAATTGCAAG-CTCGCAACCAATGGGAAATAGCTT 1681
Query 1601 TCACAGACAATGAAGAAGATGAGATGCTTGTTGGAGACGATCCATGGCCTGAATTCTGCA 1660
||||| | |||||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1682 TCACAAATAATGAAGAGGATAAGATGCTTGTTGGAGAAGATCCATGGCCTGAATTCTGCA 1741
Query 1661 ACATGGTGAAGAAGATAATCATATATTCAAAAGAGGAGGTCAAAAACTTTAAGTCC-GGA 1719
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1742 ACATGGTGAAGAAGATATTCATATATTCAAAAGAGGAGGTCAAAAACTTGAAGTCCAGGA 1801
Query 1720 AATAGTCTCTCAAATTGA 1737
| |||||||||| ||||
Sbjct 1802 AG-AGTCTCTCAAGTTGA 1818
Score = 857 bits (464), Expect = 0.0
Identities = 542/580 (93%), Gaps = 4/580 (1%)
Strand=Plus/Plus
Query 105 GCTTCAACGTCGTGTTATTGCTATTCAGCTTAAGGTGGAAAGA-AATAGTGATGAGACTT 163
||||||| ||||||||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 231 GCTTCAATGTCGTGTTATTGCTATTCAACTTAAGGTGGAAA-ACAATAGTGATGAGACTT 289
Query 164 ATGCTGAGATCACTTTGATGCCAAATACAACTCAAGTTGTAATCCCTACTCAGAATGAAA 223
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 290 ATGCTGAGATCACTTTGATGCCAGATACAACTCAAGTTGTAATCCCTACTCAGAATCAAA 349
Query 224 ATCAATTTAGGCCATTAGTTAATTCCTTTACAAAGGTTTTAACGGCCTCAGACACAAGTG 283
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 350 ATCAATTTAGGCCATTAGTTAATTCCTTTACGAAGGTTTTAACGGCCTCAGATACAAGCG 409
Query 284 CCCATGGTGGATTCTCTGTTCCGAGAAAACTTGCCACTGAATGTCTCCCTCCGCTGGATA 343
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 410 TTCATGGTGGATTCTCTGTTCCGAAAAAACATGCCATTGAATGTCTCCCTCCGCTGGATA 469
Query 344 TGTCTCAGCCTTTACCGGCACAAGAACTTCTTACTATAGATCTCCATGGTAATCAATGGA 403
|||| |||||| ||||| |||||||| ||||| |||||||||| ||||||||||||||||
Sbjct 470 TGTCACAGCCTCTACCGACACAAGAAATTCTTGCTATAGATCTTCATGGTAATCAATGGA 529
Query 404 GATTCAAACACAGCTATAGAGGTACACCGCGAAGACATTTGTTAACAACAGGTTGGAATG 463
|||||| ||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 530 GATTCAGACACATCTATAGAGGTACAGCGCAAAGACATTTGTTAACAATTGGTTGGAATG 589
Query 464 CATTCATAACATCaaaaaaaTTGGTTGCAGGGGATGTTATTGTATTCCTTAGGGGAGAGA 523
|||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct 590 CATTCACAACATCAAAAAAATTGGTTGAAGGAGATGTTATTGTATTCGTTAGGGGAGAGA 649
Query 524 CTGGAGAGTTACGAGTTAGTATCAGACGAGCGA-GATATCAACAAGGGAACATACCTTCA 582
||||||||||||||||| ||||||||||||| | || ||||||||||||| |||||||||
Sbjct 650 CTGGAGAGTTACGAGTTGGTATCAGACGAGC-AGGACATCAACAAGGGAATATACCTTCA 708
Query 583 TCACTAATATCAATAGAAAGTATGAGACATGGGGTAATTGCTTCTGCAAAGCATGCTTTT 642
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 709 TCAATAGTATCAATAGAAAGTATGAGACATGGGATAATTGCTTCTGCAAAGCATGCTTTT 768
Query 643 GATAACCAATGTATGTTCATTGTGGTTTACAAGCCAAGGT 682
||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GATAACCAATGTATGTTCATTGTGGTTTACAAGCCAAGGT 808
> AT1G34410.1 | Symbols: ARF21 | auxin response factor 21 | chr1:12577722-12580824
FORWARD LENGTH=1821
Length=1821
Score = 1109 bits (600), Expect = 0.0
Identities = 901/1042 (86%), Gaps = 38/1042 (4%)
Strand=Plus/Plus
Query 709 AGGTCAAGTCAATTTATTGTCAATTACGATAAATTCTTAGACGCCGTAAACAATAAGTTC 768
|||||||||||||||||||||| ||| || |||||||||||||| || |||||||||||
Sbjct 805 AGGTCAAGTCAATTTATTGTCAGTTATGACAAATTCTTAGACGCTGTGAACAATAAGTTT 864
Query 769 AATGTCGGGTCAAGATTTACAATGCGGTTTGAGGAAGAAAATTTCTCTGAAAGAAGATAT 828
|||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 865 AATGTCGGTTCAAGATTTACAATGCGGTTTGAGGGTGATGATTTCTCTGAAAGAAGATAT 924
Query 829 TTTGGGACAATTATTGGAGTTAGTGATTTCTCTCCTCATTGGAAATGTTCAGAATGGCGT 888
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 925 TTTGGGACAATTATTGGAGTTAGTGATTTCTCTCCTCATTGGAAGTGTTCAGAGTGGCGC 984
Query 889 AGCTTAAAAGTGCAGTGGGATGAATTTGCATCATTTCCGAGACCTGATAAAGTTTC-CCC 947
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||| || |||
Sbjct 985 AGCTTAGAAGTGCAGTGGGATGAATTTGCATCATTTTCGAGACCTAATAAAGTGTCACCC 1044
Query 948 ATGGGAAATAAAACATTCAACGCCTTCGTCAAATGTTCTCCCG-TCATCTATGCTTAAGA 1006
||||| || |||||| | |||| ||| |||||||| | || |||||| |||| ||||
Sbjct 1045 -TGGGAGATCGAACATTTAGTGCCTGCGTTAAATGTTC-CGCGATCATCTTTGCTCAAGA 1102
Query 1007 ACAAACGTTCACGAGAAGTTAATGAAATCGGTTCTTCATCATCACACCTCTTGCCTCCTA 1066
|||| |||| |||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1103 ACAAGCGTTTACGAGAAGTTAATGAATTCGGTTCTTCATCATCACATCTCTTGCCTCCTA 1162
Query 1067 TATTGACACAAGGACAAGAAATTGGACAACCAAGCATGACCTCCCCAATGAATGTTCCTC 1126
|||||||||||||||||||||||||||||| |||| || ||||||| |||||| || |||
Sbjct 1163 TATTGACACAAGGACAAGAAATTGGACAACTAAGCGTGGCCTCCCCGATGAATATTTCTC 1222
Query 1127 TTAGTTACCGTGATGCAATTGAAGATGAT-TCGACTCCTTCTAGGTTGCTAATGAGCTAC 1185
|| |||| |||||| ||| ||||| || | | || ||||||||| |||||||||||||||
Sbjct 1223 TTCGTTATCGTGATACAACTGAAGCTGCTAT-GAATCCTTCTAGATTGCTAATGAGCTAC 1281
Query 1186 TCTGTCCAGAC-AATGCCCCGACTAAATTACAATAACGATCAAATAGTTACACCAATAGA 1244
||||||| || ||||||| |||||||||||||||| ||||| ||||||| ||||||
Sbjct 1282 CCTGTCCA-ACCAATGCCCAAACTAAATTACAATAAC---CAAATGGTTACACAAATAGA 1337
Query 1245 AGGAAATATAACAAACAATGG-AGGCGCTAGTTGTAGAG-TGTTTGGAGTCTCTCTTGCC 1302
|| ||||||||||| ||| || |||| ||| || ||| | ||||||||||| |||| | |
Sbjct 1338 AGAAAATATAACAACCAA-GGCAGGCACTAATTTTAG-GCTGTTTGGAGTCACTCTGGAC 1395
Query 1303 ACTCCTCC-AGTGATCAAAGATCCCATTGAACAAATTGACTCAGATCCAAACTTAGAGAT 1361
|||||||| | ||||||||||||||||| ||||||||| ||| ||| | || |
Sbjct 1396 ACTCCTCCGA-TGATCAAAGATCCCATTAAACAAATTGGCTCGGAT--A---TT-----T 1444
Query 1362 TTCTAAACTTTCTCAA-GAGAAAATTTTTGGTCTAGGCCAAA-T--GAGATCAACAAGAG 1417
| |||||| || || || |||| ||| |||| | |||||| | ||||||| ||| ||
Sbjct 1445 --CGAAACTTACTGAAAGAAAAAAGTTT-GGTCAAAGCCAAACTTTGAGATCACCAATAG 1501
Query 1418 AGATCCAAAGCAAGCAGTTGAGTTCTACCAGAACCTGTACCAAAGTTCAAATGCATGGTG 1477
||||||||||||||||||| |||||| | || || |||||||||||||||||||| ||||
Sbjct 1502 AGATCCAAAGCAAGCAGTTCAGTTCTTCTAGGACTTGTACCAAAGTTCAAATGCAAGGTG 1561
Query 1478 TAACACTAGGAAGAGCTCTGGATTTAAGTGTTCTTAACGGATATGATCAGCTGATACTGG 1537
||||| ||||||||||| ||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1562 TAACAATAGGAAGAGCTGTGGATTTAAGTGTTCTTAATGGATATGATCAGCTAATACTAG 1621
Query 1538 AATTAGAGAAACTCTTTGATCTCAAAGGCCAGTTGCAAAAC-CGCAACCAATGGGAAATA 1596
|||| ||||| ||||||||| |||||||||| || |||| | |||||||||||| |||||
Sbjct 1622 AATTGGAGAAGCTCTTTGATATCAAAGGCCAATTACAAA-CTCGCAACCAATGGAAAATA 1680
Query 1597 GTTTTCACAGACAATGAAGAAG-ATGAGATGCTTGTTGGAGACGATCCATGGCCTGAATT 1655
| ||||||||| | ||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 1681 GCTTTCACAGATAGTGACGG-GTATGAGATGCTTGTTGGAGACGATCCATGGCCTGAATT 1739
Query 1656 CTGCAACATGGTGAAGAAGATAATCATATATTCAAAAGAGGAGGTCAAAAACTTTAAGTC 1715
|||||| ||||||||||||||| | ||||||||||||||||||||||||||| | |||||
Sbjct 1740 CTGCAAAATGGTGAAGAAGATATTGATATATTCAAAAGAGGAGGTCAAAAACCTGAAGTC 1799
Query 1716 CGGAAATAGTCTCTCAAATTGA 1737
| | || |||||||||| ||||
Sbjct 1800 CAGTAAGAGTCTCTCAAGTTGA 1821
Score = 841 bits (455), Expect = 0.0
Identities = 538/579 (93%), Gaps = 2/579 (0%)
Strand=Plus/Plus
Query 105 GCTTCAACGTCGTGTTATTGCTATTCAGCTTAAGGTGGAAAGA-AATAGTGATGAGACTT 163
||||||| ||||||||||||| ||||| ||||||||||||| | ||||||||||||| ||
Sbjct 231 GCTTCAATGTCGTGTTATTGCAATTCATCTTAAGGTGGAAA-ACAATAGTGATGAGATTT 289
Query 164 ATGCTGAGATCACTTTGATGCCAAATACAACTCAAGTTGTAATCCCTACTCAGAATGAAA 223
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 290 ATGCTGAGATCACTTTGATGCCAGATACAACTCAAGTTGTAATCCCTACTCAGAGTGAAA 349
Query 224 ATCAATTTAGGCCATTAGTTAATTCCTTTACAAAGGTTTTAACGGCCTCAGACACAAGTG 283
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 350 ATCGATTTAGGCCATTAGTTAATTCCTTTACAAAGGTTTTAACGGCCTCAGATACAAGCG 409
Query 284 CCCATGGTGGATTCTCTGTTCCGAGAAAACTTGCCACTGAATGTCTCCCTCCGCTGGATA 343
| ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 410 CTTATGGTGGATTCTCTGTTCCGAAAAAACATGCCATTGAATGTCTCCCTCCGCTGGATA 469
Query 344 TGTCTCAGCCTTTACCGGCACAAGAACTTCTTACTATAGATCTCCATGGTAATCAATGGA 403
||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||
Sbjct 470 TGTCTCAGCCTCTACCGGCACAAGAAATTCTTGCTATAGATCTCCATGATAATCAATGGA 529
Query 404 GATTCAAACACAGCTATAGAGGTACACCGCGAAGACATTTGTTAACAACAGGTTGGAATG 463
|||||| ||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||
Sbjct 530 GATTCAGACACAACTATAGAGGTACACCGCAAAGACATTCGTTAACAACTGGTTGGAATG 589
Query 464 CATTCATAACATCaaaaaaaTTGGTTGCAGGGGATGTTATTGTATTCCTTAGGGGAGAGA 523
||||||||||||||| ||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct 590 AATTCATAACATCAAAGAAATTGGTTAAAGGAGATGTTATTGTATTCGTTAGGGGAGAGA 649
Query 524 CTGGAGAGTTACGAGTTAGTATCAGACGAGCGAGATATCAACAAGGGAACATACCTTCAT 583
||||||||||||||||| ||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct 650 CTGGAGAGTTACGAGTTGGTATCAGACGAGCAAGACATCAACAAGGGAATATACCTTCAT 709
Query 584 CACTAATATCAATAGAAAGTATGAGACATGGGGTAATTGCTTCTGCAAAGCATGCTTTTG 643
|| || |||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 710 CAATAGTATCAATAGATTGTATGAGACATGGGGTAATTGCTTCCGCAAAGCATGCTTTTG 769
Query 644 ATAACCAATGTATGTTCATTGTGGTTTACAAGCCAAGGT 682
||||||||||||| |||||||||||||||||||||||||
Sbjct 770 ATAACCAATGTATATTCATTGTGGTTTACAAGCCAAGGT 808
> AT1G34390.1 | Symbols: ARF22 | auxin response factor 22 | chr1:12556005-12559082
FORWARD LENGTH=1797
Length=1797
Score = 1085 bits (587), Expect = 0.0
Identities = 880/1017 (87%), Gaps = 38/1017 (4%)
Strand=Plus/Plus
Query 712 TCAAGTCAATTTATTGTCAATTACGATAAATTCTTAGACGCCGTAAACAATAAGTTCAAT 771
||||||||||||||||||| |||||| ||||||||||| || || |||||||||||||||
Sbjct 802 TCAAGTCAATTTATTGTCAGTTACGACAAATTCTTAGATGCTGTGAACAATAAGTTCAAT 861
Query 772 GTCGGGTCAAGATTTACAATGCGGTTTGAGGAAGAAAATTTCTCTGAAAGAAGATATTTT 831
|| || ||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 862 GTTGGTTCAAGATTTACAATGCGGTTTGAGGGTGATGATTTCTCTGAAAGAAGATATTTT 921
Query 832 GGGACAATTATTGGAGTTAGTGATTTCTCTCCTCATTGGAAATGTTCAGAATGGCGTAGC 891
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |
Sbjct 922 GGGACAATTATTGGAGTTAGTGATTTCTCTCCTCATTGGAAGTGTTCAGAGTGGCGCAAC 981
Query 892 TTAAAAGTGCAGTGGGATGAATTTGCATCATTTCCGAGACCTGATAAAGTTTC-CCCATG 950
||| ||||||||||||||||||||||||||||| |||||||| ||||||| || ||| ||
Sbjct 982 TTAGAAGTGCAGTGGGATGAATTTGCATCATTTTCGAGACCTAATAAAGTGTCACCC-TG 1040
Query 951 GGAAATAAAACATTCAACGCCTTCGTCAAATGTTCTCCCGTC-ATCTATGCTTAAGAACA 1009
||| || |||||| || |||| ||| |||||||| | || | |||| |||| |||||||
Sbjct 1041 GGAGATCGAACATTTAATGCCTGCGTTAAATGTTC-CGCGACCATCTTTGCTCAAGAACA 1099
Query 1010 AACGTTCACGAGAAGTTAATGAAATCGGTTCTTCATCATCACACCTCTTGCCTCCTATAT 1069
| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1100 AGCGTTTACGAGAAGTTAATGAAATCGGTTCTTCATCATCACATCTCTTGCCTCCTATAT 1159
Query 1070 TGACACAAGGACAAGAAATTGGACAACCAAGCATGACCTCCCCAATGAATGTTCCTCTTA 1129
|||||||||||||||||||||| |||| |||| || ||||||| |||||| || |||| |
Sbjct 1160 TGACACAAGGACAAGAAATTGGCCAACTAAGCGTGGCCTCCCCGATGAATATTTCTCTCA 1219
Query 1130 GTTACCGTGATGCAATTGAAGATGAT-TCGACTCCTTCTAGGTTGCTAATGAGCTACTCT 1188
||| |||||| ||| |||||||| | | || ||||||||| ||||||||||||||| ||
Sbjct 1220 CTTATCGTGATACAACTGAAGATGTTAT-GAATCCTTCTAGATTGCTAATGAGCTACCCT 1278
Query 1189 GTCCAGAC-AATGCCCCGACTAAATTACAATAACGATCAAATAGTTACACCAATAGAAGG 1247
||||| || ||||||| |||||||||||||||| ||||| ||||||| ||||||||
Sbjct 1279 GTCCA-ACCAATGCCCAAACTAAATTACAATAAC---CAAATGGTTACACAAATAGAAGA 1334
Query 1248 AAATATAACAAACAATGGA--GGCGCTAGTTGTAGAG-TGTTTGGAGTCTCTCTTGCCAC 1304
||||||||||| ||| | | ||| ||| || ||| | ||||||||||||| || | |||
Sbjct 1335 AAATATAACAACCAA-G-ACTGGCACTAATTTTAG-GCTGTTTGGAGTCTCACTGGTCAC 1391
Query 1305 TCCTCCAGTGATCAAAGATCCCATTGAACAAATTGACTCAGATCCAAACTTAGAGATTTC 1364
|||| ||||||||||||||||||||||| |||||| ||| | ||||||||
Sbjct 1392 TCCTTCAGTGATCAAAGATCCCATTGAAGAAATTGGCTC-G-----------GAGATTTC 1439
Query 1365 TAAACTTTCTCAAG-AGAAAATTTTTGGTCTAGGCCAAA-T--GAGATCAACAAGAGAGA 1420
|||||| || ||| | |||| ||| |||| | |||||| | ||||||| ||| |||||
Sbjct 1440 GAAACTTACTGAAGGAAAAAAGTTT-GGTCAAAGCCAAACTTTGAGATCACCAACAGAGA 1498
Query 1421 TCCAAAGCAAGCAGTTGAGTTCTACCAGAACCTGTACCAAAGTTCAAATGCATGGTGTAA 1480
|||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1499 TCCAAAGCAAGCAGTTCAGTTCTACTAGAACTTGTACCAAAGTTCAAATGCAAGGTGTAA 1558
Query 1481 CACTAGGAAGAGCTCTGGATTTAAGTGTTCTTAACGGATATGATCAGCTGATACTGGAAT 1540
|| ||| ||||||| |||||||||||||||| || |||||||||||||| ||||| ||||
Sbjct 1559 CAATAGAAAGAGCTGTGGATTTAAGTGTTCTGAATGGATATGATCAGCTAATACTAGAAT 1618
Query 1541 TAGAGAAACTCTTTGATCTCAAAGGCCAGTTGCAAAAC-CGCAACCAATGGGAAATAGTT 1599
| ||| | ||||| |||||||||||||| || |||| | ||||||||||||||||||| |
Sbjct 1619 TGGAGGAGCTCTTCGATCTCAAAGGCCAATTACAAA-CTCGCAACCAATGGGAAATAGCT 1677
Query 1600 TTCACAGACAATGAAGAAGATGAGATGCTTGTTGGAGACGATCCATGGCCTGAATTCTGC 1659
|||||||| | ||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1678 TTCACAGATAGTGACGATGATAAGATGCTTGTTGGAGACGATCCATGGCCTGAATTCTGC 1737
Query 1660 AACATGGTGAAGAAGATAATCATATATTCAAAAGAGGAGGTCAAAAACTTTAAGTCC 1716
|||||||||||||||||| | |||| | |||||||||||||||||||||| ||||||
Sbjct 1738 AACATGGTGAAGAAGATATTGATAT-T-CAAAAGAGGAGGTCAAAAACTTGAAGTCC 1792
Score = 832 bits (450), Expect = 0.0
Identities = 537/578 (93%), Gaps = 10/578 (2%)
Strand=Plus/Plus
Query 105 GCTTCAACGTCGTGTTATTGCTATTCAGCTTAAGGTGGAAAGA-AATAGTGATGAGACTT 163
||||||| ||||||||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 231 GCTTCAATGTCGTGTTATTGCTATTCAACTTAAGGTGGAAA-ACAATAGTGATGAGACTT 289
Query 164 ATGCTGAGATCACTTTGATGCCAAATACAACTCAAGTTGTAATCCCTACTCAGAATGAAA 223
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 290 ATGCTGAGATCACTTTGATGCCAGATACAACTCAAGTTGTAATCCCTACTCAAAATGAAA 349
Query 224 ATCAATTTAGGCCATTAGTTAATTCCTTTACAAAGGTTTTAACGGCCTCAGACACAAGTG 283
|||||||||| |||||||||||||||||||| ||||||||||||||||| || |||| |
Sbjct 350 ATCAATTTAGACCATTAGTTAATTCCTTTACGAAGGTTTTAACGGCCTCGGATACAA--G 407
Query 284 CCCATGGTGGATTCTCTGTTCCGAGAAAACTTGCCACTGAATGTCTCCCTCCGCTGGATA 343
| |||||||||| |||||| | ||||| ||||| ||||||||| ||||| |||||||
Sbjct 408 --C--GGTGGATTCTTTGTTCCAAAAAAACATGCCATTGAATGTCTTCCTCCCCTGGATA 463
Query 344 TGTCTCAGCCTTTACCGGCACAAGAACTTCTTACTATAGATCTCCATGGTAATCAATGGA 403
||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct 464 TGTCTCAGCCTCTACCGACACAAGAACTTCTTGCTACAGATCTCCATGGTAATCAATGGA 523
Query 404 GATTCAAACACAGCTATAGAGGTACACCGCGAAGACATTTGTTAACAACAGGTTGGAATG 463
||||||| |||| ||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 524 GATTCAACCACAACTATAGAGGTACACCGCAAAGACATTTGTTAACAACTGGTTGGAATG 583
Query 464 CATTCATAACATCaaaaaaaTTGGTTGCAGGGGATGTTATTGTATTCCTTAGGGGAGAGA 523
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 584 CATTCACAACATCAAAAAAATTGGTTGCAGGGGATGTTATTGTATTCGTTAGGGGAGAGA 643
Query 524 CTGGAGAGTTACGAGTTAGTATCAGACGAGCGA-GATATCAACAAGGGAACATACCTTCA 582
||||||||||||||||| ||||||||||||| | || ||||||||||||| |||||||||
Sbjct 644 CTGGAGAGTTACGAGTTGGTATCAGACGAGC-AGGACATCAACAAGGGAATATACCTTCA 702
Query 583 TCACTAATATCAATAGAAAGTATGAGACATGGGGTAATTGCTTCTGCAAAGCATGCTTTT 642
||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 703 TCAATAATATCAATAGAAAGTATGAGACATGGGGTGATTGCTTCCGCAAAGCATGCTTTT 762
Query 643 GATAACCAATGTATGTTCATTGTGGTTTACAAGCCAAG 680
||||||||||||||||||||||||||||||||||||||
Sbjct 763 GATAACCAATGTATGTTCATTGTGGTTTACAAGCCAAG 800
> AT1G35520.1 | Symbols: ARF15 | auxin response factor 15 | chr1:13082819-13085830
REVERSE LENGTH=1797
Length=1797
Score = 1059 bits (573), Expect = 0.0
Identities = 866/1003 (86%), Gaps = 38/1003 (4%)
Strand=Plus/Plus
Query 709 AGGTCAAGTCAATTTATTGTCAATTACGATAAATTCTTAGACGCCGTAAACAATAAGTTC 768
|||||||||||||||||||||| |||||| |||||||||||||| || ||||||||||||
Sbjct 820 AGGTCAAGTCAATTTATTGTCAGTTACGACAAATTCTTAGACGCTGTGAACAATAAGTTC 879
Query 769 AATGTCGGGTCAAGATTTACAATGCGGTTTGAGGAAGAAAATTTCTCTGAAAGAAGATAT 828
|||||||| ||||||||||||||||||||||||| || |||| |||||||||||||||
Sbjct 880 AATGTCGGTTCAAGATTTACAATGCGGTTTGAGGGTGATGATTTATCTGAAAGAAGATAT 939
Query 829 TTTGGGACAATTATTGGAGTTAGTGATTTCTCTCCTCATTGGAAATGTTCAGAATGGCGT 888
|||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||
Sbjct 940 TTTGGGACAATTATTGGAGTTAGTAATTTCTCTCCTCATTGGAAGTGTTCAGACTGGCGC 999
Query 889 AGCTTAAAAGTGCAGTGGGATGAATTTGCATCATTTCCGAGACCTGATAAAGTTTC-CCC 947
|||||| ||||||||||||||||||||||||||||| ||||||| ||||||| || |||
Sbjct 1000 AGCTTAGAAGTGCAGTGGGATGAATTTGCATCATTTTTGAGACCTAATAAAGTGTCACCC 1059
Query 948 ATGGGAAATAAAACATTCAACGCCTTCGTCAAATGTTCTCCCG-TCATCTATGCTTAAGA 1006
||||| || |||||| || |||| ||| |||||||| | || |||||| | || ||||
Sbjct 1060 -TGGGAGATCGAACATTTAATGCCTGCGTTAAATGTTC-CGCGATCATCTTTTCTCAAGA 1117
Query 1007 ACAAACGTTCACGAGAAGTTAATGAAATCGGTTCTTCATCATCACACCTCTTGCCTCCTA 1066
|||| |||| |||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1118 ACAAGCGTTTACGAGAAGTTAATGAATTCGGTTCTTCATCATCACATCTCTTGCCTCCTA 1177
Query 1067 TATTGACACAAGGACAAGAAATTGGACAACCAAGCATGACCTCCCCAATGAATGTTCCTC 1126
|||||||||||||||||||||||||||||| |||| || ||||||| |||||| || |||
Sbjct 1178 TATTGACACAAGGACAAGAAATTGGACAACTAAGCGTGGCCTCCCCGATGAATATTTCTC 1237
Query 1127 TTAGTTACCGTGATGCAATTGAAGATGAT-TCGACTCCTTCTAGGTTGCTAATGAGCTAC 1185
|| ||| ||||| ||| ||||||| | | || ||||||||| |||||||||||||||
Sbjct 1238 TTCTTTATCGTGAAACAACAGAAGATGCTAT-GAATCCTTCTAGATTGCTAATGAGCTAC 1296
Query 1186 TCTGTCCAGAC-AATGCCCCGACTAAATTACAATAACGATCAAATAGTTACACCAATAGA 1244
||||||| || ||||||| || ||||||||||||| ||||| ||||||| ||||||
Sbjct 1297 CCTGTCCA-ACCAATGCCCAAACGAAATTACAATAAC---CAAATGGTTACACAAATAGA 1352
Query 1245 AGGAAATATAACAAACAATGG-AGGCGCTAGTTGTAGAGT-GTTTGGAGTCTCTCTTGCC 1302
|| ||||||||||| ||| || |||| ||| || ||| || ||||||||||||||| |||
Sbjct 1353 AGAAAATATAACAACCAA-GGCAGGCACTAATTTTAG-GTTGTTTGGAGTCTCTCTGGCC 1410
Query 1303 ACTCCTCCAGTGATCAAAGATCCCATTGAACAAATTGACTCAGATCCAAACTTAGAGATT 1362
|||||||| |||||||||||||||||||||||||||| ||| ||| | || |
Sbjct 1411 ACTCCTCCGGTGATCAAAGATCCCATTGAACAAATTGGCTCGGAT--A---TT-----T- 1459
Query 1363 TCTAAACTTTCTCAAG-AGAAAATTTTTGGTCTAGGCCAAA-T--GAGATCAACAAGAGA 1418
| |||||| || ||| | |||| ||| |||| | |||||| | ||||||| ||| | |
Sbjct 1460 -CGAAACTTACTGAAGGAAAAAAGTTT-GGTCAAAGCCAAACTTTGAGATCACCAACAAA 1517
Query 1419 GATCCAAAGCAAGCAGTTGAGTTCTACCAGAACCTGTACCAAAGTTCAAATGCATGGTGT 1478
||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| |||||
Sbjct 1518 AATCCAAAGCAAGCAGTTCAGTTCTACTAGAACTTGTACGAAAGTTCAAATGCAAGGTGT 1577
Query 1479 AACACTAGGAAGAGCTCTGGATTTAAGTGTTCTTAACGGATATGATCAGCTGATACTGGA 1538
|||| ||||||||||| ||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 1578 AACAATAGGAAGAGCTGTGGATTTAAGTGTTCTTAATGGATATGATCAGCTAATACTAGA 1637
Query 1539 ATTAGAGAAACTCTTTGATCTCAAAGGCCAGTTGCAAAAC-CGCAACCAATGGGAAATAG 1597
||| ||||| ||||| |||||||||||||| || |||| | |||||||||||| |||||
Sbjct 1638 ATTGGAGAAGCTCTTCGATCTCAAAGGCCAATTACAAA-CTCGCAACCAATGGAAAATAA 1696
Query 1598 TTTTCACAGACAATGAAGAAGATGAGATGCTTGTTGGAGACGATCCATGGCCTGAATTCT 1657
||||||||| | ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1697 TTTTCACAGGTAGTGACGAGGATGAGATGCTTGTTGGAGACGATCCATGGCCTGAATTCT 1756
Query 1658 GCAACATGGTGAAGAAGATAATCATATATTCAAAAGAGGAGGT 1700
||||||||||||||| |||| | |||| | |||||||||||||
Sbjct 1757 GCAACATGGTGAAGAGGATA-T-ATAT-T-CAAAAGAGGAGGT 1795
Score = 765 bits (414), Expect = 0.0
Identities = 537/594 (90%), Gaps = 17/594 (3%)
Strand=Plus/Plus
Query 105 GCTTCAACGTCGTGTTATTGCTATTCAGCTTAAGGTGGAAAGA-AATAGTGATGAGACTT 163
||||||| ||||||||||||| ||||| ||||||||||||| | ||||||||||||||||
Sbjct 231 GCTTCAATGTCGTGTTATTGCAATTCATCTTAAGGTGGAAA-ACAATAGTGATGAGACTT 289
Query 164 ATGCTGAGATCACTTTGATGCCAAATACAAC--------------T-CAAGTTGTAATCC 208
||||| ||||||||||||||||| ||||||| | |||||||||||||
Sbjct 290 ATGCTAAGATCACTTTGATGCCAGATACAACTGTAAGTGAAAATTTACAAGTTGTAATCC 349
Query 209 CTACTCAGAATGAAAATCAATTTAGGCCATTAGTTAATTCCTTTACAAAGGTTTTAACGG 268
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 350 CTACTCAGAATGAAAATCAATTTAGGCCATTAGTTAATTCCTTTACAAAGGTTTTAACTG 409
Query 269 CCTCAGACACAAGTGCCCATGGTGGATTCTCTGTTCCGAGAAAACTTGCCACTGAATGTC 328
|||| || | |||||| |||||| ||| |||||||||| ||||| ||||| ||||||||
Sbjct 410 CCTCTGATATAAGTGCTAATGGTGTATTTTCTGTTCCGAAAAAACATGCCATTGAATGTC 469
Query 329 TCCCTCCGCTGGATATGTCTCAGCCTTTACCGGCACAAGAACTTCTTACTATAGATCTCC 388
||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 470 TCCCTCCTCTGGATATGTCTCAGCCTCTACCGGCACAAGAACTTCTTGCTATAGATCTCC 529
Query 389 ATGGTAATCAATGGAGATTCAAACACAGCTATAGAGGTACACCGCGAAGACATTTGTTAA 448
|||||||||||||||| |||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 530 ATGGTAATCAATGGAGCTTCAGACACAGCTATAGAGGTACACCGCAAAGACATTTATTAA 589
Query 449 CAACAGGTTGGAATGCATTCATAACATCaaaaaaaTTGGTTGCAGGGGATGTTATTGTAT 508
|||| |||||||||| ||| | ||||||||||||||||||| ||| |||||||||||||
Sbjct 590 CAACTGGTTGGAATGAATTTACAACATCAAAAAAATTGGTTAAAGGAGATGTTATTGTAT 649
Query 509 TCCTTAGGGGAGAGACTGGAGAGTTACGAGTTAGTATCAGACGAGCGAGATATCAACAAG 568
|| ||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct 650 TCGTTAGGGGAGAGACTGGAGAGTTACGAGTTGGTATCAGACGAGCAAGACATCAACAAG 709
Query 569 GGAACATACCTTCATCACTAATATCAATAGAAAGTATGAGACATGGGGTAATTGCTTCTG 628
|||| |||||||||||| || |||||||||| ||||||||||||||||||||||||| |
Sbjct 710 GGAATATACCTTCATCAATAGTATCAATAGATTGTATGAGACATGGGGTAATTGCTTCCG 769
Query 629 CAAAGCATGCTTTTGATAACCAATGTATGTTCATTGTGGTTTACAAGCCAAGGT 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CAAAGCATGCTTTTGATAACCAATGTATGTTCATTGTGGTTTACAAGCCAAGGT 823
> AT1G35240.1 | Symbols: ARF20 | auxin response factor 20 | chr1:12927457-12930523
REVERSE LENGTH=1773
Length=1773
Score = 1037 bits (561), Expect = 0.0
Identities = 818/936 (87%), Gaps = 42/936 (4%)
Strand=Plus/Plus
Query 105 GCTTCAACGTCGTGTTATTGCTATTCAGCTTAAGGTGGAAAGA-AATAGTGATGAGACTT 163
||||||| | ||||||||||| ||||| ||||||||||||| | ||||||||||||||||
Sbjct 231 GCTTCAATGCCGTGTTATTGCAATTCATCTTAAGGTGGAAA-ACAATAGTGATGAGACTT 289
Query 164 ATGCTGAGATCACTTTGATGCCAAATACAACTCAAGTTGTAATCCCTACTCAGAATGAAA 223
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 290 ATGCTGAGATCACTTTGATGCCAGATACAACTCAAGTTGTAATCCCTACTCAGAGTGAAA 349
Query 224 ATCAATTTAGGCCATTAGTTAATTCCTTTACAAAGGTTTTAACGGCCTCAGACACAAGTG 283
||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |
Sbjct 350 ATCAATTTAGGCCATTAGTTAATTCCTTTACGAAGGTTTTAACGGCCTCTGATACAAGCG 409
Query 284 CCCATGGTGGATTCTCTGTTCCGAGAAAACTTGCCACTGAATGTCTCCCTCCGCTGGATA 343
| |||||||||||| |||||||| ||||| ||||| ||||||||||||| | | |
Sbjct 410 CTTATGGTGGATTCTTTGTTCCGAAAAAACATGCCATTGAATGTCTCCCT-C-C-----A 462
Query 344 TGTCTCAGCCTTTACCGGCACAAGAACTTCTTACTATAGATCTCCATGGTAATCAATGGA 403
|| |||| |||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 463 ---CT--GCCTCTACCGGCACAAGAACTTCTTGCTAAAGATCTCCATGGTAATCAATGGA 517
Query 404 GATTCAAACACAGCTATAGAGGTACACCGCGAAGACATTTGTTAACAACAGGTTGGAATG 463
|||||| ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||
Sbjct 518 GATTCAGACACAGCTATAGAGGTACACCGCAAAGACATTCGTTAACAACTGGTTGGAATG 577
Query 464 CATTCATAACATCaaaaaaaTTGGTTGCAGGGGATGTTATTGTATTCCTTAGGGGAGAGA 523
||||| |||||| ||||| |||||| ||| ||||||||||||||| ||||||||||||
Sbjct 578 AATTCACAACATCGAAAAAGTTGGTTAAAGGAGATGTTATTGTATTCGTTAGGGGAGAGA 637
Query 524 CTGGAGAGTTACGAGTTAGTATCAGACGAGCGAGATATCAACAAGGGAACATACCTTCAT 583
||||||||||||||||| ||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct 638 CTGGAGAGTTACGAGTTGGTATCAGACGAGCAAGACATCAACAAGGGAATATACCTTCAT 697
Query 584 CACTAATATCAATAGAAAGTATGAGACATGGGGTAATTGCTTCTGCAAAGCATGCTTTTG 643
|| || |||||||||| ||||||||||||||||||||||||| |||||||||||| |||
Sbjct 698 CAATAGTATCAATAGATTGTATGAGACATGGGGTAATTGCTTCCGCAAAGCATGCTCTTG 757
Query 644 ATAACCAATGTATGTTCATTGTGGTTTACAAGCCAAGGTTTATATTTTGTGTCTGTATAA 703
||||||||||||| ||||||||||||||||||||||| | || | |
Sbjct 758 ATAACCAATGTATATTCATTGTGGTTTACAAGCCAAG-T--AT---------C---A--- 799
Query 704 GTATCAGGTCAAGTCAATTTATTGTCAATTACGATAAATTCTTAGACGCCGTAAACAATA 763
| | ||||||||||||||||||| |||||| |||||||||||||| | |||||||
Sbjct 800 G-----G-TCAAGTCAATTTATTGTCAGTTACGACAAATTCTTAGACGCTATGAACAATA 853
Query 764 AGTTCAATGTCGGGTCAAGATTTACAATGCGGTTTGAGGAAGAAAATTTCTCTGAAAGAA 823
|||||| |||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct 854 AGTTCATTGTCGGTTCAAGATTTACAATGCGGTTTGAGGGTGATGATTTCTCTGAAAGAA 913
Query 824 GATATTTTGGGACAATTATTGGAGTTAGTGATTTCTCTCCTCATTGGAAATGTTCAGAAT 883
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 914 GATATTTTGGGACAATTATTGGAGTTAATGATTTCTCTCCTCATTGGAAGTGTTCAGAGT 973
Query 884 GGCGTAGCTTAAAAGTGCAGTGGGATGAATTTGCATCATTTCCGAGACCTGATAAAGTTT 943
|||| |||||| |||| |||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 974 GGCGCAGCTTAGAAGTTCAGTGGGATGAATTTGCATCATTTTCGAGACCTAATAAAGTGT 1033
Query 944 C-CCCATGGGAAATAAAACATTCAACGCCTTCGTCAAATGTTCTCCCG-TCATCTATGCT 1001
| ||| ||||| || |||||| || | || ||| |||||||| | || |||||| ||||
Sbjct 1034 CACCC-TGGGAGATCGAACATTTAATGTCTGCGTTAAATGTTC-CGCGATCATCTTTGCT 1091
Query 1002 TAAGAACAAACGTTCACGAGAAGTTAATGAAATCGG 1037
|||||||| |||| |||||||||||||||| ||||
Sbjct 1092 CAAGAACAAGCGTTTACGAGAAGTTAATGAATTCGG 1127
Score = 638 bits (345), Expect = 0.0
Identities = 570/673 (85%), Gaps = 38/673 (6%)
Strand=Plus/Plus
Query 1078 GGACAAGAAATTGGACAACCAAGCAT-GACCTCCCCAATGAAT-GTTCCTCTTAGTTACC 1135
||||||||||||||||||| |||| | | ||||||| |||||| || ||||| |||| |
Sbjct 1126 GGACAAGAAATTGGACAACTAAGCGTCG-CCTCCCCGATGAATACTT-CTCTTCGTTATC 1183
Query 1136 GTGATGCAATTGAAGATGAT-TCGACTCCTTCTAGGTTGCTAATGAGCTACTCTGTCCAG 1194
||||| ||| |||||||| | | || ||||||||| ||||||||||||||| |||||||
Sbjct 1184 GTGATACAACTGAAGATGCTAT-GAATCCTTCTAGATTGCTAATGAGCTACCCTGTCCA- 1241
Query 1195 A-CAATGCCCCGACTAAATTACAATAACGATCAAATAGTTACACCAATAGAAGGAAATAT 1253
| |||||||| |||||||||||||||| ||||| ||||||| |||||||| ||||||
Sbjct 1242 ACCAATGCCCAAACTAAATTACAATAAC---CAAATGGTTACACAAATAGAAGAAAATAT 1298
Query 1254 AACAAACAATGG-AGGCGCTAGTTGTAGAG-TGTTTGGAGTCTCTCTTGCCACTCCTCCA 1311
||||| ||| || || | ||| || ||| | |||||||||||||||| |||| ||||| |
Sbjct 1299 AACAACCAA-GGCAGTCACTAATTTTAG-GCTGTTTGGAGTCTCTCTAGCCATTCCTCTA 1356
Query 1312 GTGATCAAAGATCCCATTGAACAAATTGACTCAGATCCAAACTTAGAGATTTCTAAACTT 1371
||||||||||||||||||||| |||||| ||| | || ||||| ||||||
Sbjct 1357 GTGATCAAAGATCCCATTGAAGAAATTGGCTC-G-----------GATATTTCGAAACTT 1404
Query 1372 TCTCAA-GAGAAAATTTTTGGTCTAGGCCAAA---TGAGATCAACAAGAGAGATCCAAAG 1427
|| || || |||| ||||||| | |||||| |||||||| ||| ||||||||||||
Sbjct 1405 ACTGAAGGA-AAAAAGTTTGGTCAAAGCCAAACTTTGAGATCACCAATAGAGATCCAAAG 1463
Query 1428 CAAGCAG-TTGAGTTCTACCAGAACCTGTACCAAAGTTCAAATGCATGGTGTAACACTAG 1486
||||||| ||| ||||||| ||||| |||||||||||||||||||| ||||||||| |||
Sbjct 1464 CAAGCAGTTTG-GTTCTACTAGAACTTGTACCAAAGTTCAAATGCAAGGTGTAACAATAG 1522
Query 1487 GAAGAGCTCTGGATTTAAGTGTTCTTAACGGATATGATCAGCTGATACTGGAATTAGAGA 1546
|||||||| ||||||||||||||||||| |||||||||||||| ||||| ||||| ||||
Sbjct 1523 GAAGAGCTGTGGATTTAAGTGTTCTTAATGGATATGATCAGCTAATACTAGAATTGGAGA 1582
Query 1547 AACTCTTTGATCTCAAAGGCCAGTTGCAAAAC-CGCAACCAATGGGAAATAGTTTTCACA 1605
| |||||||||||||||||||| | | |||| |||||||||||| |||||| |||||||
Sbjct 1583 AGCTCTTTGATCTCAAAGGCCAACTAC-AAACTCGCAACCAATGGAAAATAGCTTTCACA 1641
Query 1606 GACAATGAAGAAG-ATGAGATGCTTGTTGGAGACGATCCATGGCCTGAATTCTGCAACAT 1664
|| | ||| | | ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1642 GATAGTGACG-GGTATGAGATGCTTGTTGGAGACGATCCATGGCCTGAATTCTGCAAAAT 1700
Query 1665 GGTGAAGAAGATAATCATATATTCAAAAGAGGAGGTCAAAAACTTTAAGTCCGGAAATAG 1724
||||||||||||| | ||||||||||||||||||||||||||| | |||||| | || ||
Sbjct 1701 GGTGAAGAAGATATTGATATATTCAAAAGAGGAGGTCAAAAACCTAAAGTCCAGTAAGAG 1760
Query 1725 TCTCTCAAATTGA 1737
|||||||| ||||
Sbjct 1761 TCTCTCAAGTTGA 1773
> AT1G34310.1 | Symbols: ARF12 | auxin response factor 12 | chr1:12508548-12511520
REVERSE LENGTH=1782
Length=1782
Score = 1020 bits (552), Expect = 0.0
Identities = 861/1005 (86%), Gaps = 42/1005 (4%)
Strand=Plus/Plus
Query 709 AGGTCAAGTCAATTTATTGTCAATTACGATAAATTCTTAGACGCCGTAAACAATAAGTTC 768
||||||||| |||||||||||| |||||| |||||||| ||||| || ||||||||||||
Sbjct 805 AGGTCAAGTAAATTTATTGTCAGTTACGACAAATTCTTGGACGCTGTGAACAATAAGTTC 864
Query 769 AATGTCGGGTCAAGATTTACAATGCGGTTTGAGGAAGAAAATTTCTCTGAAAGAAGATAT 828
|||||||| |||||||||||||||||||| |||| || |||||||||||||||||| |
Sbjct 865 AATGTCGGTTCAAGATTTACAATGCGGTTAGAGGGTGATGATTTCTCTGAAAGAAGATGT 924
Query 829 TTTGGGACAATTATTGGAGTTAGTGATTTCTCTCCTCATTGGAAATGTTCAGAATGGCGT 888
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 925 TTTGGGACAATTATTGGAGTTAGTGATTTCTCTCCTCATTGGAAATGTTCAGAGTGGCGC 984
Query 889 AGCTTAAAAGTGCAGTGGGATGAATTTGCATCATTTCCGAGACCTGATAAAGTTTC-CCC 947
|||||| |||||||||||||||||||| ||||||||||| ||||| | ||||| || |||
Sbjct 985 AGCTTAGAAGTGCAGTGGGATGAATTTACATCATTTCCGGGACCTAAAAAAGTGTCACCC 1044
Query 948 ATGGGAAATAAAACATTCAACGCCTTCG-TCAAATGTTCTCCCG-TCATCTATGCTTAAG 1005
||||| || |||||| || |||| | | |||||||| | || |||| | |||| |||
Sbjct 1045 -TGGGACATCGAACATTTAATGCCTGCAAT-AAATGTTC-CGCGATCATTTTTGCTCAAG 1101
Query 1006 AACAAACGTTCACGAGAAGTTAATGAAATCGGTTCTTCATCATCACACCTCTTGCCTCCT 1065
||||| |||| |||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1102 AACAAGCGTTTACGAGAAGTTAATGAAATCGGTTCTTCATCATCACATCTCTTACCTCCT 1161
Query 1066 ATATTGACACAAGGACAAGAAATTGGACAACCAAGCAT-GACCTCCCCAATGAATGTTCC 1124
|||||||||||||||||||||| || ||||| ||| | | |||| || |||||| || |
Sbjct 1162 ATATTGACACAAGGACAAGAAAATGAACAACTAAGTGTTG-CCTCTCCGATGAATATTTC 1220
Query 1125 TCTTAGTTACCGTGATGCAATTGAAGATGAT-TCGACTCCTTCTAGGTTGCTAATGAGCT 1183
|||| |||| |||||||||| |||||||| | | || |||||||| |||||||||||||
Sbjct 1221 TCTTCGTTATCGTGATGCAACTGAAGATGCTAT-GAATCCTTCTAAATTGCTAATGAGCT 1279
Query 1184 ACTCTGTCCAGAC-AATGCCCCGACTAAATTACAATAACGATCAAATAGTTACACCAATA 1242
|| ||||||| || ||||||| |||||||||||||||| ||||| |||||| |||
Sbjct 1280 ACCCTGTCCA-ACCAATGCCCAAACTAAATTACAATAAC---CAAATGGTTACAGAAATG 1335
Query 1243 GAAGGAAATATAACAAACAATGG-AGGCGCTAGTTGTAGAG-TGTTTGGAGTCTCTCTTG 1300
|||| ||||||||||| ||| | |||| ||| || ||| | ||||||||||| |||| |
Sbjct 1336 GAAGAAAATATAACAACCAA-GACAGGCACTAATTTTAG-GCTGTTTGGAGTCACTCTGG 1393
Query 1301 CCACTCCTCCAGTGATCAAAGATCCCATTGAACAAATTGACTCAGATCCAAACTTAGAGA 1360
||||||||| ||||||||||||||||||||| |||||| ||| | ||||
Sbjct 1394 ACACTCCTCCGGTGATCAAAGATCCCATTGAAGAAATTGGCTC-G-----------GAGA 1441
Query 1361 TTTCTAAACTTTCTCAAG-AGAAAATTTTTGGTCTAGGCCAAA-TG-A-GATCAACAAGA 1416
|||| |||||| || ||| | |||| ||| |||||| |||||| | | ||||| ||| |
Sbjct 1442 TTTCGAAACTTACTGAAGGAAAAAAGTTT-GGTCTAAGCCAAACTTTAAGATCACCAACA 1500
Query 1417 GAGATCCAAAGCAAGCAGTTGAGTTCTACCAGAACCTGTACCAAAGTTCAAATGCATGGT 1476
|||||||||| ||||||||| ||||||| ||||| |||||||||||||||||||| |||
Sbjct 1501 GAGATCCAAAACAAGCAGTTCAGTTCTAGTAGAACTTGTACCAAAGTTCAAATGCAAGGT 1560
Query 1477 GTAACACTAGGAAGAGCTCTGGATTTAAGTGTTCTTAACGGATATGATCAGCTGATACTG 1536
|||||| ||||||||||| ||||||||||||||||||| |||||||||||||| |||||
Sbjct 1561 GTAACAATAGGAAGAGCTGTGGATTTAAGTGTTCTTAATGGATATGATCAGCTAATACTA 1620
Query 1537 GAATTAGAGAAACTCTTTGATCTCAAAGGCCAGTTGCAAAAC-CGCAACCAATGGGAAAT 1595
||||| ||||| ||||||||| ||||||| || ||||||| | |||||||||||||||||
Sbjct 1621 GAATTGGAGAAGCTCTTTGATATCAAAGGTCAATTGCAAA-CTCGCAACCAATGGGAAAT 1679
Query 1596 AGTTTTCACAGACAATGAAGAAGATGAGATGCTTGTTGGAGACGATCCATGGCCTGAATT 1655
|| ||||||||| | ||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1680 AGCTTTCACAGATAGTGACGAAGATAAGATGCTTGTTGGAGACGATCCATGGCCTGAATT 1739
Query 1656 CTGCAACATGGTGAAGAAGATAATCATATATTCAAAAGAGGAGGT 1700
|||||||||||||||||||||| |||| | |||||||||||||
Sbjct 1740 CTGCAACATGGTGAAGAAGATATTCAT-T---CAAAAGAGGAGGT 1780
Score = 857 bits (464), Expect = 0.0
Identities = 541/579 (93%), Gaps = 2/579 (0%)
Strand=Plus/Plus
Query 105 GCTTCAACGTCGTGTTATTGCTATTCAGCTTAAGGTGGAAAGA-AATAGTGATGAGACTT 163
||||||| ||||||||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 231 GCTTCAATGTCGTGTTATTGCTATTCATCTTAAGGTGGAAA-ACAATAGTGATGAGACTT 289
Query 164 ATGCTGAGATCACTTTGATGCCAAATACAACTCAAGTTGTAATCCCTACTCAGAATGAAA 223
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 290 ATGCTGAGATCACTTTGATGCCAGATACAACTCAAGTTGTAATCCCTACTCAGAATGAAA 349
Query 224 ATCAATTTAGGCCATTAGTTAATTCCTTTACAAAGGTTTTAACGGCCTCAGACACAAGTG 283
|||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 350 ATCAATTTAGACCATTAGTTAATTCCTTTACGAAGGTTTTAACGGCCTCAGATACAAGCG 409
Query 284 CCCATGGTGGATTCTCTGTTCCGAGAAAACTTGCCACTGAATGTCTCCCTCCGCTGGATA 343
| ||||||||||||| ||| |||| ||||| ||||| ||||||||||||| |||||||||
Sbjct 410 CTCATGGTGGATTCTTTGTACCGAAAAAACATGCCATTGAATGTCTCCCTTCGCTGGATA 469
Query 344 TGTCTCAGCCTTTACCGGCACAAGAACTTCTTACTATAGATCTCCATGGTAATCAATGGA 403
||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 470 TGTCTCAACCTTTACCTGCACAAGAACTTCTTGCTATAGATCTCCATGGTAATCAATGGA 529
Query 404 GATTCAAACACAGCTATAGAGGTACACCGCGAAGACATTTGTTAACAACAGGTTGGAATG 463
||||||| |||| ||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 530 GATTCAACCACAACTATAGAGGTACACCGCAAAGACATTTGTTAACAACTGGTTGGAATG 589
Query 464 CATTCATAACATCaaaaaaaTTGGTTGCAGGGGATGTTATTGTATTCCTTAGGGGAGAGA 523
|||||| |||||||||||||||||||||||||||||| || |||||| ||||||||||||
Sbjct 590 CATTCACAACATCAAAAAAATTGGTTGCAGGGGATGTCATCGTATTCGTTAGGGGAGAGA 649
Query 524 CTGGAGAGTTACGAGTTAGTATCAGACGAGCGAGATATCAACAAGGGAACATACCTTCAT 583
||||||||||||||||| ||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct 650 CTGGAGAGTTACGAGTTGGTATCAGACGAGCAAGACATCAACAAGGGAATATACCTTCAT 709
Query 584 CACTAATATCAATAGAAAGTATGAGACATGGGGTAATTGCTTCTGCAAAGCATGCTTTTG 643
|| || |||||||||| ||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 710 CAATAGTATCAATAGATTGTATGAGACATGGGGTAGTTGCTTCCGCAAAGCATGCTTTTG 769
Query 644 ATAACCAATGTATGTTCATTGTGGTTTACAAGCCAAGGT 682
|||||||||||||||||| ||||||||||||||||||||
Sbjct 770 ATAACCAATGTATGTTCACTGTGGTTTACAAGCCAAGGT 808
> AT1G43950.1 | Symbols: ARF23 | auxin response factor 23 | chr1:16672582-16673952
REVERSE LENGTH=669
Length=669
Score = 586 bits (317), Expect = 2e-166
Identities = 407/448 (91%), Gaps = 15/448 (3%)
Strand=Plus/Plus
Query 105 GCTTCAACGTCGTGTTATTGCTATTCAGCTTAAGGTGGAAAGA-AATAGTGATGAGACTT 163
||||||| ||||||||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 231 GCTTCAATGTCGTGTTATTGCTATTCATCTTAAGGTGGAAA-ACAATAGTGATGAGACTT 289
Query 164 ATGCTGAGATCACTTTGATGCCAAATACAACTCAAGTTGTAATCCCTACTCAGAATGAAA 223
||| |||||| |||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 290 ATGTTGAGATTACTTTGATGCCAGATACAACTCAAGTTGTAATCCCTACTGAGAATGAAA 349
Query 224 ATCAATTTAGGCCATTAGTTAATTCCTTTACAAAGGTTTTAACGGCCTCAGACACAAGTG 283
|||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 350 ATCAATTTAGGCCAATAGTTAATTCCTTTACAAAGGTTTTAACGGCTTCAGATACAAGCG 409
Query 284 CCCATGGTGGATTCTCTGTTCCGA-GAAAACTTGCCACTGAATGTCTCCCTCCGCTGGAT 342
| || |||| |||||||||||| | | |||| ||||| ||||||||||||||||||||||
Sbjct 410 CTCAAGGTGAATTCTCTGTTCC-ATGTAAACATGCCATTGAATGTCTCCCTCCGCTGGAT 468
Query 343 ATGTCTCAGCCTTTACCGGCACAAGAACTTCTTACTATAGATCTCCATGGTAATCAATGG 402
|||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 469 ATGTCTCAACCTATACCGGCACAAGAACTTATTGCTATAGATCTCCATGGTAATCAATGG 528
Query 403 AGATTCAAACACAGCTATAGAGGTACACCGCGAAGACATTTGTTAACAACAGGTTGGAAT 462
|||||||||||||||||||||| ||| ||||| ||||| |||| |||||||||
Sbjct 529 AGATTCAAACACAGCTATAGAG-TACCCCGCGGAGACA--------CAACTGGTTGGAAT 579
Query 463 GCATTCATAACATCaaaaaaaTTGGTTGCAGGGGATGTTATTGTATTC-CTTAGGGGAGA 521
||||||| |||||||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct 580 GCATTCACAACATCAAAAAAATTGGTTGTAGGGGATGTTATTGTATTCGCT-AGGGGAGA 638
Query 522 GACTGGAGAGTTACGAGTTAGTATCAGA 549
||||||||||||||||||| ||||||||
Sbjct 639 GACTGGAGAGTTACGAGTTGGTATCAGA 666
> AT1G35545.1 | Symbols: | other RNA | chr1:13110517-13112832
REVERSE LENGTH=814
Length=814
Score = 172 bits (93), Expect = 8e-42
Identities = 132/151 (87%), Gaps = 2/151 (1%)
Strand=Plus/Minus
Query 1036 GGTTCTTCATCATCACACCTCTTGCCTCCTATATTGACACAAGGACAAGAAATTGGACAA 1095
|||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 491 GGTTCTTCCTCATCACATCTCTTGCCTCCTACATTGACACAAGGACAAGAAATTGGACAA 432
Query 1096 CCAAGCATGACCTCCCCAATGAATGTTCCTCTTAGTTACCGTGATGCAATTGAAGATGAT 1155
| ||||||| || |||| |||||| || ||||| |||| |||||| | |||||||| |
Sbjct 431 CAAAGCATGGCCACCCCGATGAATATTTCTCTTCGTTATCGTGATATTACTGAAGATGCT 372
Query 1156 -TCGACTCCTTCTAGGTTGCTAATGAGCTAC 1185
| |||||||||||| |||||||||||||||
Sbjct 371 AT-GACTCCTTCTAGATTGCTAATGAGCTAC 342
Score = 167 bits (90), Expect = 4e-40
Identities = 125/142 (88%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 898 GTGCAGTGGGATGAATTTGCATCATTTCCGAGACCTGATAAAGTTTCCCCATGGGAAATA 957
||||||||||||||||||||||||||||||||||| | ||||||| |||||||| ||
Sbjct 713 GTGCAGTGGGATGAATTTGCATCATTTCCGAGACCAAACCAAGTTTCACCATGGGACATC 654
Query 958 AAACATTCAACGCCTTCGTCAAATGTTCTCCCG-TCATCTATGCTTAAGAACAAACGTTC 1016
|||||| |||||||| |||||||||| ||| | |||||| | || |||||||| |||||
Sbjct 653 GAACATTTAACGCCTTGGTCAAATGTT-TCCAGGTCATCTTTTCTCAAGAACAAGCGTTC 595
Query 1017 ACGAGAAGTTAATGAAATCGGT 1038
||||||||||||||||||||||
Sbjct 594 ACGAGAAGTTAATGAAATCGGT 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85893132495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5