BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336505
Length=2880
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34420.1 | Symbols: | leucine-rich repeat transmembrane pro... 4161 0.0
> AT1G34420.1 | Symbols: | leucine-rich repeat transmembrane protein
kinase family protein | chr1:12584587-12587570 FORWARD
LENGTH=2901
Length=2901
Score = 4161 bits (2253), Expect = 0.0
Identities = 2691/2900 (93%), Gaps = 40/2900 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAAGATACATGTTCCTCCAGAAACAGGCAAGTTCATGTTCTGTCTCTTCTTCACC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 22 ATGAAGAAGATACATGTTCCTCCAGAAACAGGCAAGTTCATGTTCTGTCTCTTCTTCAGC 81
Query 61 TTCTTCTCTTGTTGCCATGTATGTTTCTCTGAGTTGTCTTTGAACCAGACAAACACAATG 120
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 82 TTCTTATCTTGTTGCCATGTATGTTTCTCTGAGTTGTCGTTGAACCAGACAAACACAATG 141
Query 121 ATCGAACTCTCTAGGTTCCTTAATATCTCGGATTGGAATCTTCCTGGTTCTGAGAGGAAT 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 ATCGAACTCTCTAGTTTCCTTAATATCTCGGATTGGAATCTTCCTGGTTCTGAGAGGAAT 201
Query 181 CCATGTTCATGGAACGGTGTTCTTTGCAGCCGACCAGACAATAGCTCTGTGATTAGCCTG 240
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 202 CCATGTTCATGGAACGGTGTTCTCTGCAGCTTACCAGACAATAGCTCTGTGATTAGCCTG 261
Query 241 TCTCTCTCTAACTTTGATCTCTCCAATTCTTCCTTCTTACCACTTGTCTGCAATCTCCAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TCTCTCTCTAACTTTGATCTCTCCAATTCTTCCTTCTTACCACTTGTCTGCAATCTCCAG 321
Query 301 ACTTTGGAGTCTCTCGATGTCTCCAACAACAGATTAAGCTCAATCCCAGATGGGTTCGTG 360
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 322 ACTTTGGAGTCTCTTGATGTCTCCAACAACAGATTGAGCTCAATCCCAGAAGGGTTCGTT 381
Query 361 ACGAATTGTGAAAAACTCATTGGGT-TGAAGCATCTGAACTTCAGCACGAACAAGTTTTC 419
|| ||||| |||| ||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 382 ACAAATTGCGAAAGACTCATT-GCTCTGAAGCATCTGAACTTCAGCACGAACAAGTTTTC 440
Query 420 TTCTTCCCCTGGTTTCCGCGGTTTCTCCAAATTGGCGGTTCTTGATTTCTCTCACAACGT 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TACTTCCCCTGGTTTCCGCGGTTTCTCCAAATTGGCGGTTCTTGATTTCTCTCACAACGT 500
Query 480 GTTGAGTGGGAACATTGGAGACTATGGTTTTGATGGGTTGGTTCAGTTGAGGAGTTTGAA 539
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 GTTGAGTGGGAACGTTGGAGACTATGGTTTTGATGGGTTGGTTCAGTTGAGGAGTTTGAA 560
Query 540 TCTTAGCTTCAACAGTTTAACTGGTTCTGTTCCAGTTCATTTGACCAAAGGTCTGGAGAA 599
||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 561 TCTTAGCTTCAACAGATTAACTGGTTCTGTTCCGGTTCATTTGACCAAAAGTCTAGAGAA 620
Query 600 GCTCGAGGTTTCAGATAATCGTTTGAGCGGTACTATTCCCGAGGGGATCGACGATTACCA 659
||| ||||||||||||||| |||||||||||||||||||||| || ||| | ||||| ||
Sbjct 621 GCTTGAGGTTTCAGATAATAGTTTGAGCGGTACTATTCCCGAAGGCATCAAAGATTATCA 680
Query 660 AGAACTAAAGTTGATAGATCTCAGTGATAATCAGCTTAATGGGTCAATCCCGAGTTCGTT 719
|||||||| | |||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 681 AGAACTAACGCTGATAGATCTCAGTGATAATCAGCTTAACGGCTCTATCCCGAGTTCGTT 740
Query 720 GGGAAATCTCTCCAAGTTAGAAAGTTTACTTCTTTCCAACAACTATCTTAGTGGGCTAAT 779
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 741 GGGAAACCTCTCCAAGTTAGAAAGTTTACTTCTCTCCAACAACTATCTTAGTGGACTAAT 800
Query 780 CCCAGAATCACTTTCAAGCATCCAAACCTTACGTCGATTTGCAGCGAACCGTAACCAATT 839
|||||||||||||||||||||||| || || ||||| ||||||||||||||||||| |||
Sbjct 801 CCCAGAATCACTTTCAAGCATCCAGACATTGCGTCGGTTTGCAGCGAACCGTAACCGATT 860
Query 840 CACGGGAAG-AATTCCATCAGGGATCACAAAACACCTTGAGAACTTAGATCTCAGTTTCA 898
|||||| || ||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 861 CACGGG-AGAAATTCCATCAGGGCTCACAAAACACCTCGAGAACTTAGATCTCAGTTTCA 919
Query 899 ACAAG-TTAGCGGAGTCGATTCCAGATGACCTTTTGTCGCAGCTTAAACTCGTCTCTGTG 957
|| || ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 920 AC-AGTTTAGCGGGGTCGATTCCAGGTGACCTTTTGTCGCAGCTTAAACTCGTCTCTGTG 978
Query 958 GATTTGTCGTTTAATCATCTTGTTGGATGGATACCGCAAAGCATTTCCCCTAGCCTGGTT 1017
||| |||| | |||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 979 GATCTGTCATCTAATCAACTTGTTGGATGGATACCACAAAGCATTTCGTCTAGCCTGGTT 1038
Query 1018 AGGCTGAGACTAGGAAGCAATAAGCTGACAGGG-AAGGTGCCCTCTACTGCGTTTGAATC 1076
||||| |||||||||||||||||||| |||||| | || |||||| ||||||||||||
Sbjct 1039 AGGCTAAGACTAGGAAGCAATAAGCTAACAGGGTCA-GTACCCTCTGTTGCGTTTGAATC 1097
Query 1077 ACTGCAGAACCTAATC-TATCTGGAGATGGACAACAACAGTTTAACTGGCCACATACCTC 1135
|||||| ||||| | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1098 GCTGCAGCTCCTAA-CGTATCTGGAGATGGACAACAACAGTTTAACTGGCTTCATACCTC 1156
Query 1136 CTTCATTTGGAAATCTTGTGATCTTGAATCTCCTGAACTTGGCTATGAACGAGTTCACCG 1195
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1157 CTTCATTTGGAAATCTTGTGAGCTTGAATCTCCTGAACTTGGCTATGAACGAGTTCACCG 1216
Query 1196 GAAACTTACCTCCTGCATTTGGAAATCTTA-CAAGGCTTCAAGTGATAAAACTGCAGCAA 1254
| | ||||||||||||||||||||| |||| | |||||||||||||||||||| ||||||
Sbjct 1217 GGATCTTACCTCCTGCATTTGGAAACCTTAGC-AGGCTTCAAGTGATAAAACTACAGCAA 1275
Query 1255 AACAAGCTTACTGGAGAAATCCCAGATACTATCACATTTTTGAGTAACCTCTTGATTCTT 1314
||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 1276 AACAAGCTTACGGGAGAAATACCAGATACAATCGCATTTTTGAGTAACCTCTTGATTCTT 1335
Query 1315 AACATCAGCTGGAATTCTCTGAGTGGATCCATACCGCCTTCGCTTTCAAACCTAACGAGG 1374
||||||||||| |||||||| |||||||||||||||||||||||||| | |||| ||||
Sbjct 1336 AACATCAGCTGCAATTCTCTAAGTGGATCCATACCGCCTTCGCTTTCTCAGCTAAAGAGG 1395
Query 1375 CTTTCCAGCATGAACTTGCAAGGCAACAATCTGAGTGGTACCATACCTGATAACATT-AG 1433
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1396 CTTTCCAACATGAACTTGCAAGGCAACAATCTGAATGGTACCATACCTGATAACATTCA- 1454
Query 1434 AAATCTGGAGGATTTGATAGAACTTCAGCTCGGACAAAACCAGCTACGAGGGAGGATCCC 1493
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1455 AAATCTGGAGGATTTGATAGAACTTCAGCTGGGACAAAACCAGCTACGAGGGAGGATCCC 1514
Query 1494 AGTAATGCCACGAAAGTTGCAAATTTCCTTAAATCTCAGCTACAACTTGTTTGAAGGATC 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 AGTAATGCCACGAAAGTTGCAAATTTCCTTAAATCTCAGCTACAACTTGTTTGAAGGATC 1574
Query 1554 TATCCCTACTACATTGTCTGAACTTGACCGCTTGGAAGTTCTTGATCTGTCAAATAACAA 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575 TATCCCTACTACATTGTCTGAACTTGACCGCTTGGAAGTTCTTGATCTGTCAAATAACAA 1634
Query 1614 ATTCTCCGGCGAAATCCCTGATTTTCTGAGAAGTTTAATGTCCCTTACACAGCTCATACT 1673
|||||||||||||| ||| |||| ||||| || ||||||||||||||||||||||||||
Sbjct 1635 CTTCTCCGGCGAAATACCTAATTTCCTGAGCAGATTAATGTCCCTTACACAGCTCATACT 1694
Query 1674 CTCCAACAATCAGCTTACCGGAAATATTCCAAAGTTCACCAAGAATGTTTTACTCAATGT 1733
|||||||||||||||||||||||||||||||| ||||||| | ||||||| | || ||||
Sbjct 1695 CTCCAACAATCAGCTTACCGGAAATATTCCAAGGTTCACCCATAATGTTTCAGTCGATGT 1754
Query 1734 CAGCGGAAACCCTGGGATCAAGCTGAATAA-TGAGGAT-AACTTCTCAATCCCGA-AAAC 1790
||| |||||||||||| | ||| |||| || |||| | || | ||| |||| || |||
Sbjct 1755 CAGAGGAAACCCTGGGGTTAAGTTGAA-AACTGAGAACGAAGT-CTCTATCCAGAGAAA- 1811
Query 1791 GTC-ATCTGGGAAGAGTAAACTAGTTTTCG-TTATAATCTTTGTCGCCAGTGGAGTT-T- 1846
|| ||| ||||| || ||||||||| | | || |||| |||||| || ||||||| |
Sbjct 1812 -TCCATCAGGGAAAAGCAAACTAGTTAT-GATTGTAATATTTGTCTCCCTTGGAGTTCTT 1869
Query 1847 GCGCTATCATGGCCGGGATCATAACTGTCATCGTGCTGAAACTTTCTAGGCGCTTCAAGG 1906
|| || | | | |||||||||||||||| |||||||||| |||| ||||||| |||||
Sbjct 1870 GCTCTG-CTTA-CAGGGATCATAACTGTCACCGTGCTGAAATTTTCAAGGCGCTGCAAGG 1927
Query 1907 GGATTAACAACATAG-AGGCCGACCAAAACGAAGAAGGCTCAACTGTTCTTCCC-GAGGT 1964
||||||||||||| | ||| ||||| | | |||||||| ||||||||||| ||| |||||
Sbjct 1928 GGATTAACAACAT-GCAGGTCGACCCAGATGAAGAAGGGTCAACTGTTCT-CCCTGAGGT 1985
Query 1965 CATTCATGGGAAA-CTTCTCACCTCAAATGCTCTACACAGATCAAACATTAACTTCACCA 2023
|||||||| ||| |||||||| ||||| |||||||| ||||||||||| |||||| |||
Sbjct 1986 AATTCATGG-AAAGCTTCTCACTTCAAACGCTCTACATAGATCAAACATCAACTTCGCCA 2044
Query 2024 AAGCTGTGGAAGCTGTTGCTCATCCAGAA-AGTGCTCTGTATCAGACAATGTTCTGGAGT 2082
||||||||||||||||||| ||||||||| | || |||| ||||||||||||||||||||
Sbjct 2045 AAGCTGTGGAAGCTGTTGCGCATCCAGAACA-TGGTCTGCATCAGACAATGTTCTGGAGT 2103
Query 2083 TACTACAGAGTAGTAATGCCCTCTGGTTCGAGTTACTTCATCAAAAAACTTAACACAAGA 2142
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2104 TACTACAGAGTTGTCATGCCCTCTGGTTCGAGTTACTTCATCAAAAAACTTAACACAAGA 2163
Query 2143 GACAGGATTTTCCAACAAGCCAGTAGTGAGCAACTAGAGCTAGAGCTAGAGATGTTGGGC 2202
|||||| ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 2164 GACAGGGTTTTCCAGCAAGCGAGTAGTGAGCAACTAGAGGTAGAGCTAGAGATGTTGGGC 2223
Query 2203 AAGCTGCATCACGCGAACATAATGGTTCCACTAGCTTATGTGCTCTATTCAGAAGGATGC 2262
||||| |||||| | ||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 2224 AAGCTACATCACACAAACGTAATGGTTCCACTAGCTTATGTCCTCTATTCAGAAGGATGC 2283
Query 2263 TTGCTCGTCTATGACTTTGCTCACACGTGTACCCTTTACGATG-TTCTACACAACCATAC 2321
|| ||| ||||||||||| ||||||| ||||| |||||||| | |||||||||||||||
Sbjct 2284 TTACTCATCTATGACTTTTCTCACACATGTACACTTTACGA-GATTCTACACAACCATAG 2342
Query 2322 CAGTGATGTGGTTGATTGGACAAGCAGGTATAGTATTGCGGTTGGTATAGCTCAGGGAAT 2381
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2343 CAGTGGTGTGGTTGATTGGACAAGCAGGTATAGTATTGCGGTTGGCATAGCTCAGGGAAT 2402
Query 2382 CTCTTACTTGCATGGATCT-ATATCCAACGGTCGTGATCCAATCCTTCTACCAGATCTCT 2440
|||||||||||||||||| | ||||| |||||||||||||||||||||||||||||| |
Sbjct 2403 CTCTTACTTGCATGGATCCGA-ATCCAGCGGTCGTGATCCAATCCTTCTACCAGATCTGT 2461
Query 2441 CTAGTaaaaaaaTAATACTCAAGTCGCTCACTGAGCCCCTGGTAGGGGACATTGAACTGT 2500
|||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||
Sbjct 2462 CTAGTAAAAAAATACTACTCAAGTCGCTCACTGAGCCTCTAGTAGGGGACATTGAACTGT 2521
Query 2501 TCAAGGTAATCGATCCTTCCAGAAGCAACAGCAGCCTCTCCGCTGTTGCAGGCACCATCG 2560
||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||
Sbjct 2522 TCAAGGTAATCGATCCTTCCAAAAGCAACAGCAGCCTCTCAGCAGTTGCAGGCACCATCG 2581
Query 2561 GCTACATTCCACCAGAGTATGCTTACACAATGAGGGTGACAATGGCTGGGAATGTCTACA 2620
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 2582 GCTACATTCCACCAGAGTATGCTTACACGATGAGGGTGACAATGGCTGGGAACGTCTACA 2641
Query 2621 GCTTTGGGGTGATTCTTTTGGAGTTGTTAACTGGAAGGCCAGCTGTAAGTGAAGGAAGAG 2680
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2642 GCTTTGGGGTGATTCTTTTAGAGTTGTTAACTGGAAGGCCAGCTGTAAGTGAAGGAAGAG 2701
Query 2681 ATTTGGCTAAGTGGGTGCAGAGCCATTCCAGCCATCAAGAGCAGCAGAACAACATTCTTG 2740
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2702 ATTTGGCTAAGTGGGTGCAGAGCCATTCGAGCCATCAAGAGCAGCAGAACAACATTCTTG 2761
Query 2741 ATCTCAGAGTGAGCAAAACATCAACTGTAGCAACAAAGCAGATGCTCCGTGCCCTCAGTA 2800
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2762 ATCTCAGAGTGAGCAAAACATCAACTGTAGCAACAAAGCAGATGCTCCGTGCCCTCGGTG 2821
Query 2801 TTGCTCTTGCCTGCATAAACATCTCTCCTGGGGCAAGACCAAAGATGAAGACTGTTCTAC 2860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2822 TTGCTCTTGCCTGCATAAACATCTCTCCTGGGGCAAGACCAAAGATGAAGACTGTTCTAC 2881
Query 2861 GGATGCTCACAAGACTTTAA 2880
|||||||||||||||| |||
Sbjct 2882 GGATGCTCACAAGACTCTAA 2901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143126288379
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5