BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336533
Length=4002
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10170.1 | Symbols: ATNFXL1, NFXL1 | NF-X-like 1 | chr1:3333... 2073 0.0
AT1G31200.1 | Symbols: ATPP2-A9, PP2-A9 | phloem protein 2-A9 |... 566 7e-160
> AT1G10170.1 | Symbols: ATNFXL1, NFXL1 | NF-X-like 1 | chr1:3333595-3337491
REVERSE LENGTH=3897
Length=3897
Score = 2073 bits (1122), Expect = 0.0
Identities = 2273/2814 (81%), Gaps = 137/2814 (5%)
Strand=Plus/Plus
Query 397 GAGAATACTGTGTTGACAGACCCAAATC-TGCCTCAACTT-TTGCAAGAGATACAGGATA 454
|||||| |||||||||||||||||| | ||||||||||| || |||||| ||||||| |
Sbjct 586 GAGAATGTTGTGTTGACAGACCCAAA-CTTGCCTCAACTTGTT-CAAGAGTTACAGGAGA 643
Query 455 AGCTAATG-AAAG-GTTCTATTGAGTGTATGATTTGTTATGATATGGTTAGGCGGTCTGC 512
|||| || ||| |||||||||||||||||||||||||||| | |||| || |||||||
Sbjct 644 AGCT--TGTCAAGAGTTCTATTGAGTGTATGATTTGTTATGACAAGGTTGGGAGGTCTGC 701
Query 513 TAATATCTGGTCTTGCTCCAGTTGTTACTCCATATTCCATCTGAATTGTATCAAGAAATG 572
||||||||||| |||||||| ||||| ||||| |||||| | || |||||||||| ||
Sbjct 702 CAATATCTGGTCATGCTCCAGCTGTTATTCCATCTTCCATATCAACTGTATCAAGAGGTG 761
Query 573 GGCTCGAGCGCCAACTTCGGTGGATTTGTTGGCGGATAAAAACCAAGGT-AGTAATTGGA 631
||||||||| |||||||| || |||||| | || || |||||||||||| | ||| ||||
Sbjct 762 GGCTCGAGCACCAACTTCAGTTGATTTGCTAGCTGAGAAAAACCAAGGTGA-TAACTGGA 820
Query 632 GATGTCCAGGTTGTCAGTTTGTTCAGTTGACATCGTC-AAAG-GATATACAGTATCGATG 689
||||||||||||| || | ||| ||||||||||| || |||| ||| | | ||||| ||
Sbjct 821 GATGTCCAGGTTGCCAATCTGTACAGTTGACATCATCTAAAGAGATTTCC--TATCGGTG 878
Query 690 CTTTTGTGGAAAGAGGAA-AGACCCATC-TAGTGATCCATATTTGACTCCTCACTCTTGT 747
||||||||||||||| || ||| ||| | | ||| |||||| | ||||| ||||| ||
Sbjct 879 CTTTTGTGGAAAGAG-AAGAGATCCACCGTC-TGACCCATATCTCACTCCACACTCATGC 936
Query 748 GGAGATAT-ATGTGGGAAGCCGCTGGAGAAAGAGTTTGCAACAACTGCGATGGCT-AACG 805
|| || | ||||||||| ||||||||||||||||||||| | ||| || | || || |
Sbjct 937 GGGGA-ACCATGTGGGAAACCGCTGGAGAAAGAGTTTGCACCTGCTGAGACGACTGAA-G 994
Query 806 AAAATACTT-GTCCTCATGTTTGTGTATTGCAGTGTCATCCCGGTCCATGCCCTCCATGT 864
| || ||| |||||||||| ||||| |||||||||||||| |||||||| ||||| |||
Sbjct 995 AGGAT-CTTTGTCCTCATGTATGTGTTTTGCAGTGTCATCCTGGTCCATGTCCTCCCTGT 1053
Query 865 AAGGCATTTGCCCCACCTCGTAACTGTCCTTGTGGTAAGAAGATGATCAGAACCAGATGC 924
|| || ||||| |||||||||| |||||||||||| || |||||| | | || ||||||
Sbjct 1054 AAAGCCTTTGCTCCACCTCGTAGCTGTCCTTGTGGGAAAAAGATGGTTACTACTAGATGC 1113
Query 925 TCCGAAAGAAAATCTAATCATACTTGTGGGCAGAGTTGCGATAAGCTTCTTTA-TTGTGG 983
||||| | | |||| ||| | |||||||||| ||||||||||||||||| | ||| ||
Sbjct 1114 TCCGAGCGGAGATCTGATCTTGTTTGTGGGCAGCGTTGCGATAAGCTTCTT-AGTTGCGG 1172
Query 984 CCGTCATCGATGTGAAAGGGCATGTCATGTGGGGCCTTGTGATCCTTGTCAGGTACAAGT 1043
||||||| |||||||||| |||||||||| || |||||||||||||||||||||| ||
Sbjct 1173 GCGTCATCAATGTGAAAGGACATGTCATGTTGGCCCTTGTGATCCTTGTCAGGTACTGGT 1232
Query 1044 CAATGCCTCCTGCTTT-TGCAAGCAAACAGCGGAGAGTGTAATCTGTGGTGACATGAATG 1102
|||||| | || ||| |||||| ||| || ||||| ||| || || ||||| |||||||
Sbjct 1233 AAATGCCACATG-TTTCTGCAAGAAAAAAGTGGAGACTGTCATTTGCGGTGATATGAATG 1291
Query 1103 TGAAGGGAGAGGTGAAAGCAGAAGATGGCGTGTTTTCATGCAAATTGAACTGTAGAAAAC 1162
||||||| || |||||||||||||||| || | |||||||| || |||||| | || |
Sbjct 1292 TGAAGGGGGAATTGAAAGCAGAAGATGGTGTCTATTCATGCAGTTTTAACTGTGGGAAGC 1351
Query 1163 AGCTTG-AGTGTGGTAACCATTACTGT-CGTGATGTTTGCCATCCTGGGTCTTGTGGGGA 1220
|||| | |||||||| |||| |||| | || || ||||||||||| |||| |||||
Sbjct 1352 CTCTTGGA-TGTGGTAATCATTTCTGTTCC-GAGGTATGCCATCCTGGACCTTGCGGGGA 1409
Query 1221 CTGTGAGTTCCTGCCTAGTAGAATTAAGTCATGCTATTGTGGGAAAACGAGTTTGGAAGA 1280
|||||| || ||||| |||||| ||||| |||||||||||||||| ||| |||| |||||
Sbjct 1410 CTGTGACTTACTGCCCAGTAGAGTTAAGACATGCTATTGTGGGAATACGCGTTTAGAAGA 1469
Query 1281 GGAGA---GGCGGAGTTGCCTTG-ATCCAATTCCTTCTTGCTCGAACATATGCAGCAAGC 1336
||| ||| ||||||| ||| | |||||||||||||| || || |||| || ||||
Sbjct 1470 ACAGATCAGGCAGAGTTGC-TTGGACCCAATTCCTTCTTGTTCAAATGTATGTAGGAAGC 1528
Query 1337 TTCTTCCATGT-GGCCTGCATAACT-GCAAAGAAATGTGCCATTCAGGTGGTTGTTCGCC 1394
||||||| ||| || | |||| || |||| || ||||||||| |||||| ||| ||||
Sbjct 1529 TTCTTCCTTGTAGGT-TACATA-CTTGCAATGAGATGTGCCATGCAGGTGATTGCCCGCC 1586
Query 1395 TTGTTTAGTCCAAGTGAGCCAAAAATGTCGGTGCGGCTCAACATCTC-GGACTGTGGAAT 1453
||||||||||||||| | ||| ||||| ||||| || |||||||| | || |||||||||
Sbjct 1587 TTGTTTAGTCCAAGTTAACCAGAAATGCCGGTGTGGGTCAACATC-CAGGGCTGTGGAAT 1645
Query 1454 GCTACA-AGACAGTTT--T-AGAGACAGAGAAGTTCATTTGCGCTAAACCATGTGGCCGT 1509
|||||| | ||| || | |||| |||||||||| | |||||||| |||||||| |||
Sbjct 1646 GCTACATA-ACAACTTCCTCAGAGGCAGAGAAGTTTGTGTGCGCTAAGCCATGTGGACGT 1704
Query 1510 AAGAAAAATTGTGGGAGGCATAGATGCCAT-GAGCGGTGCTGCCCTCTCCTGAACCATCC 1568
||||| || |||||||| |||||||| | ||||| |||||||||||| |||||
Sbjct 1705 AAGAAGAACTGTGGGAGACATAGATGT-AGCGAGCGTTGCTGCCCTCTCTTGAACGGG-- 1761
Query 1569 AAAGAATGA-TGATCTT-TCAGGCGAtttttttGATCTCCACTT-T-TGCCATATACCTT 1624
|| ||| || |||| || || ||||||| || | |||| | | ||||| |||||||
Sbjct 1762 AA-GAA-GAATGAT-TTATCTGGCGATTGG---GA-C-CCACATGTCTGCCAAATACCTT 1813
Query 1625 GTG-GAAAGAGGCTAAGGTGCGGACAGCATTCCTGTGAAACTCTCTGTCACACTGGTCAT 1683
|| ||| || ||||||||| || ||||||||||||||| || | ||||||| ||| |||
Sbjct 1814 GTCAGAA-GAAGCTAAGGTGTGGGCAGCATTCCTGTGAATCTTTATGTCACAGTGGACAT 1872
Query 1684 TGTCCTCCTTGCCTCGAGATGATTTTCACTGATCTTACATGTGCTTGTGGGAA-AACTTC 1742
|| |||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1873 TGCCCTCCTTGTCTCGAGATGATCTTCACTGATCTTACATGTGCTTGTGG-AAGAACTTC 1931
Query 1743 GATACCTCCTCCATTACCATGTGGAACGCCTGTCCCGAGTTGTCAGCTTCCTTGCTCGGT 1802
||| ||||||||| || ||||||| || ||||| || || ||||||||||| ||| || |
Sbjct 1932 GATTCCTCCTCCACTATCATGTGGGACACCTGTTCCTAGCTGTCAGCTTCCATGCCCGAT 1991
Query 1803 TCCTCAGCCTTGTGGCCATTCCGCTACTCATGGTTGCCATTTTGGAGACTG-CATGCCTT 1861
||||||||||||||||||||| | ||| ||||| |||||||||||||| || | | ||||
Sbjct 1992 TCCTCAGCCTTGTGGCCATTCTGATACGCATGGATGCCATTTTGGAGATTGTCCT-CCTT 2050
Query 1862 GTTCAGTACCCATG-G-AGAAGAAATGCATTGGTGGTCATGTGGTTCTCAGGAACATACC 1919
|||| ||||| || | | ||||| ||| |||||||||||||||||||||| ||||||||
Sbjct 2051 GTTC--TACCCCTGTGGAAAAGAAGTGCGTTGGTGGTCATGTGGTTCTCAGAAACATACC 2108
Query 1920 GTGTGGGTTAAAAGACATTAGATGTAACAAAATATGCGGAAAGACAAGGTGTTGTGGCAT 1979
|||||||| |||||||||||||||| ||| || || |||||||| ||| ||||||||||
Sbjct 2109 CTGTGGGTTGAAAGACATTAGATGTACCAAGATTTGTGGAAAGACGAGGCGTTGTGGCAT 2168
Query 1980 GCATGCTTGTGCCAGGGCGTGTCACCCTGAACCATGTGACAATGGTGGTAACGCATCTGT 2039
||||||||||||||| | |||||||| || || ||||||| | | || | |||||
Sbjct 2169 GCATGCTTGTGCCAGAACTTGTCACCCGGAGCCTTGTGACA--GCTTC-AATGAATCTG- 2224
Query 2040 AA-CTGGTCTACGTGTTACTTGCGGTCAGACGTGTGGTGCTCCTAGAAGAGACTGCAGAC 2098
|| | ||| | |||||||| || | |||| |||||||||||||||| ||| |||||||
Sbjct 2225 AAGCAGGTATGCGTGTTACGTGTAGACAGAAATGTGGTGCTCCTAGAACAGATTGCAGAC 2284
Query 2099 ACACTTGTGCAGCACTGTGCCATCCTTCTGCGTCTTGTCCTGATC-AGAGATGTGAGTTT 2157
|||||||||||||||| ||||||||||||||| |||| ||||| | | |||||||| |||
Sbjct 2285 ACACTTGTGCAGCACTCTGCCATCCTTCTGCGCCTTGCCCTGACCTA-AGATGTGAATTT 2343
Query 2158 CCACTCAAAATTGCTTGTTCATGTGGTCGCATAACAGCTACCGTCCCTTGTGATG-TCGG 2216
|| ||| |||| |||||||||||||||| ||||| ||||| ||||||||||||| | ||
Sbjct 2344 TCAGTCACAATTACTTGTTCATGTGGTCGTATAACCGCTACGGTCCCTTGTGATGCTGGG 2403
Query 2217 AG--GAAGTGCTGGTGGTTTTAGCGGTGACTCTAT--C-TATGA--AA-CCTCCATTTTG 2268
| ||||||| |||| || | | ||| | | ||||| || |||| ||||
Sbjct 2404 GGAAGAAGTGCCAACGGTTCTAATGTTTACTGTGCGGCCTATGATGAAGCCTCTGTTTTA 2463
Query 2269 CAGAAGCTTCCAG-TGCCGCTCCAACCTGTCGAGTCAAATGGGAATAGGATTCCTCTTGG 2327
||||||||||||| | || || || ||||| || || | || || | || || || ||
Sbjct 2464 CAGAAGCTTCCAGCT-CCACTTCAGCCTGTTGAATCGAGCGGAAACCGTATCCCCCTCGG 2522
Query 2328 GCAGAGAAAGCTTACTTGTGATGAAGAGTGTGCTAAGGTGGAACGTAAGCGGGTTCTTCA 2387
||||||||||||| | |||||||| |||||||| ||| |||| |||||||||||||||||
Sbjct 2523 GCAGAGAAAGCTTTCGTGTGATGATGAGTGTGCGAAGCTGGAGCGTAAGCGGGTTCTTCA 2582
Query 2388 AGATGCATTTGATATCACTCCTCCAAGTTTAGACGCTTTACATTTT-GATGAGAATACTG 2446
||||||||||||||| ||||| |||| | | || || |||||||| | |||||| |||
Sbjct 2583 AGATGCATTTGATATAACTCCCCCAAATCTGGAGGCATTACATTTCAGC-GAGAATTCTG 2641
Query 2447 CCATGACTGAGATCATTTCAGATCTTTATAGACGTGACCCTAAGTGGGTGCTAGCAGTTG 2506
| ||||| ||||| |||||||| |||||||| ||||| || |||||||| || || ||||
Sbjct 2642 CTATGACAGAGATTATTTCAGACCTTTATAGGCGTGATCCAAAGTGGGTACTGGCTGTTG 2701
Query 2507 AGGAGCGATGCAAGTTCTTGGTACTTGG-AAAGGCCAGAGGTAGCACAAGTAGTTCCCTA 2565
| ||||| |||||||||||||||||||| |||| | ||||| ||||||||| | ||||
Sbjct 2702 AAGAGCGCTGCAAGTTCTTGGTACTTGGGAAAG-CAAGAGGAAGCACAAGT-G--CCCTT 2757
Query 2566 AAGCTCCATATCTTCTGTACTATGGAAAAGGATAAAAGAGATGCAGTACGG-TTGATAGC 2624
||| ||||||||||||| | ||| | ||||||||| |||| | || || || |||||
Sbjct 2758 AAGGTCCATATCTTCTGCCCGATGCAGAAGGATAAACGAGACACGGTTCGACTT-ATAGC 2816
Query 2625 TGAGAGGTGGAAACTTGCTGTAAGCAATGCTGGGTGGGAGCCAAAACGCTTTGCAGTGGT 2684
||||||||||||||||| ||| ||||| || ||||||||||||||||| ||| |||||||
Sbjct 2817 TGAGAGGTGGAAACTTGGTGTTAGCAACGCAGGGTGGGAGCCAAAACGGTTTACAGTGGT 2876
Query 2685 TTACGTTACA-CAGAAGTCAAAACCCCCTACAAGGATCATTGGAGTCAAAGG-TGTTGC- 2741
| |||| ||| || || || ||||| || |||||||||||||||| | | || || |||
Sbjct 2877 TCACGTAACAGCAAAA-TCGAAACCGCCAACAAGGATCATTGGAG-CTAGGGGTGGTGCT 2934
Query 2742 --CTC-AGCAGGCGGGCCCCACGCACCAGC-CTTTGATCCACTGGTTGATATGGATCCTC 2797
||| | ||| ||||| ||| |||| | || |||| | ||||| ||||||||||||
Sbjct 2935 ATCTCGAT-AGGAGGGCCACACCCACC-GTTCTATGATTCGCTGGTGGATATGGATCCTG 2992
Query 2798 GACTCGTGGTTTGTTTTTCTG-ATCTCCCAAGGGAAGCTAATATCAGTGCCTTGGTTCTG 2856
|||| ||||||| |||| ||| |||| || || || || |||||||| |||||||| |||
Sbjct 2993 GACTTGTGGTTTCTTTT-CTGGATCTTCCGAGAGAGGCGAATATCAGCGCCTTGGTACTG 3051
Query 2857 AGATTTGGAGGCGAATGCGAGCTTGTTTGGTTGAATGACAAGAATGCATTAGCCGTCTTC 2916
|||||||| || ||||| |||||||||||| |||||||||||||||| ||||| || |||
Sbjct 3052 AGATTTGGGGGTGAATGTGAGCTTGTTTGGCTGAATGACAAGAATGCTTTAGCGGTGTTC 3111
Query 2917 CACGATCCA-GTTCGAGCAGCCACTGCCATGAGAAGACTTGAACACGGTTCTGTGTACCA 2975
||||| ||| | ||||| |||||||||||||| || ||||| |||||||| || || ||
Sbjct 3112 CACGA-CCATGCCCGAGCTGCCACTGCCATGAGGAGGCTTGAGCACGGTTCAGTATATCA 3170
Query 2976 AGGAGCGGTAGTTGTTGTACAGAACCAAGGACAATCTCCGTCTCTCAGTAACGCATGGGG 3035
||||| || | ||||| |||| | || |||||||| || || | ||| | ||||||
Sbjct 3171 TGGAGCTGT-G--GTTGTCCAGAGCGGCGGGCAATCTCCATCACTTAATAATGTATGGGG 3227
Query 3036 AA--T-ACCAGGCAGCTCGGT-TAAGA-G---A----GGAAATCCATGGAATA-AGGCTG 3082
|| | ||| |||||||||| | || | | ||||||||||||| | || |||
Sbjct 3228 AAAATTACCTGGCAGCTCGGCGTGGGATGTTGACAAAGGAAATCCATGGAGGAGAG-CTG 3286
Query 3083 TGATTAAGGA-A-TCAGATGACTCTTGGGGAACAGAAGATTCTCCCATTGGAGG 3134
||||| |||| | | |||||||| |||||| | |||||||| |||||||||||
Sbjct 3287 TGATTCAGGAGAGT--GATGACTCCTGGGGAGCTGAAGATTCCCCCATTGGAGG 3338
> AT1G31200.1 | Symbols: ATPP2-A9, PP2-A9 | phloem protein 2-A9
| chr1:11146923-11147678 REVERSE LENGTH=543
Length=543
Score = 566 bits (306), Expect = 7e-160
Identities = 369/400 (92%), Gaps = 2/400 (1%)
Strand=Plus/Plus
Query 3604 AGGATGCCTGCTGAGCTGAAGATGGTGAGTTGGTTAGAGGTAACCGGTTCTTTTGAGAAG 3663
|||||||||||||||||||||||||||||||||||||| ||||||||||| || || |||
Sbjct 145 AGGATGCCTGCTGAGCTGAAGATGGTGAGTTGGTTAGAAGTAACCGGTTCATTCGACAAG 204
Query 3664 ATTGAACCCGCTAAAACATACCGAATCGGTTTTAAAATCTCGTTTAAAACGGATGCGACC 3723
|||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 205 ATTGAACCCGGGAAAACATATCGAATCGGTTTTAAAATCTCGTTTAAACCGGATGCGACC 264
Query 3724 GGTTGGGATGAAGCCCCAGTTTTCATGTCTGCTAAAATCGGGAAGAAAGGCAAGACGGTG 3783
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 265 GGTTGGGACAAAGCCCCTGTTTTCATGTCTGCTAAAATCGGGAAGAAAGGCAAGACAGTG 324
Query 3784 TGGAAACGAATCAAATCCGTTAACCAGAACTTTGGTAAACTGAAAGACGGATCAGAACCC 3843
|||||| ||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 325 TGGAAAAGAATCAAATCCGTTAGCCAGAACTTTGGTATACTGAAAGGTGGATCAGAACCC 384
Query 3844 ATCAATATACCTGACGAGTCCGATGGCCGGTTCGAAATCTCGGTTAGTCC-AGCATCGCT 3902
||||||||||||||||||||||||||| ||| ||||||| ||||||||| | || ||||
Sbjct 385 GTCAATATACCTGACGAGTCCGATGGCCTGTTTGAAATCTTGGTTAGTCCCA-CAGCGCT 443
Query 3903 TAACCAAGATACTATGCTTCAGTTTGGTCTGTATGAAGTGTGGACTGGACGATGGAAGAC 3962
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 444 TAACCAAGATACTAAGCTTCAGTTTGGTCTGTATGAGGTGTGGACTGGACGATGGAAGAC 503
Query 3963 CGGTTTGTTGATCCATGAAGCCTTTGTTCACGAAGTATAA 4002
||| |||||||||| |||||||||||||| ||||| |||
Sbjct 504 AGGTCTGTTGATCCACGAAGCCTTTGTTCAAGAAGTGTAA 543
Score = 161 bits (87), Expect = 4e-38
Identities = 94/97 (97%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 3420 CAATAGAAAAGCATGGATTTTACAACCGAGTGGTCTTAACTTTGTCTGGGGAGGTGACTC 3479
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 57 CAATAGAAAAGCATGGATTTCACAACCGAGTGGTCTTAACTTTGTTTGGGGAGGTGACTC 116
Query 3480 GAGATATTGGGTTATCCCTAAAGAACCAAGG-TGCCT 3515
||||||||||||||||||||||||||||||| |||||
Sbjct 117 GAGATATTGGGTTATCCCTAAAGAACCAAGGATGCCT 153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 199413598425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5