BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg336537

Length=894
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G17700.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   130    2e-29


> AT4G17700.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G17990.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr4:9854322-9855745 FORWARD LENGTH=847
Length=847

 Score =  130 bits (70),  Expect = 2e-29
 Identities = 213/278 (77%), Gaps = 25/278 (9%)
 Strand=Plus/Plus

Query  514  TTCTACAAAGGTAGCTTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGACAG-A-A-AA  570
            |||||||||||||| ||||||||||||||||||||||||||||||||||| |  | | ||
Sbjct  436  TTCTACAAAGGTAGTTTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGATAATATATAA  495

Query  571  TGGGTTT-ACGTGGTGAATGAATCAGAGTTGCAAA-ACACTGATTGGATTTATCTGTATT  628
              | ||| ||||||||||  |||||||| ||| || ||| ||| ||||||  | | ||  
Sbjct  496  ACGATTTTACGTGGTGAAAAAATCAGAGCTGCTAACACA-TGACTGGATTCGTTTATACA  554

Query  629  TGGAACTTGTCATTTGTTCAC-GC-CATAGGGAGATTTC--AGATGGC-GA-TCTATCCA  682
            ||||||||| | |||  | |  || |||  | ||||  |  | |   | || |||||| |
Sbjct  555  TGGAACTTG-C-TTTCCTAAAAGCGCATTTG-AGATCGCCTAAAAATCCGAATCTATCTA  611

Query  683  AGTTGAAGATTGTGAATG-TGGCGATAGAAACTAGTGA-AGA-AGTGGAGCCGCCTAA-T  738
            |||||  |||||| | || | |||||||||||||  || | | | |||||||||| || |
Sbjct  612  AGTTGGTGATTGTCA-TGGTAGCGATAGAAACTAAAGATA-ATA-TGGAGCCGCC-AAGT  667

Query  739  GAGCGACTCAACGCCAA-ACATGCATTTGTCTACATAA  775
            ||| ||||||| ||||  | |||||||| |||||||||
Sbjct  668  GAGAGACTCAAGGCCAGGA-ATGCATTTTTCTACATAA  704



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43653473743


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5