BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg336548

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G54900.1 | Symbols: CXIP1, ATGRXCP | CAX interacting protein...   403    5e-112


> AT3G54900.1 | Symbols: CXIP1, ATGRXCP | CAX interacting protein 
1 | chr3:20341588-20342393 REVERSE LENGTH=806
Length=806

 Score =  403 bits (218),  Expect = 5e-112
 Identities = 269/293 (92%), Gaps = 6/293 (2%)
 Strand=Plus/Plus

Query  47   CGGCACTCGCCGTTCACAACCGTCAGCCATCGTTCTAC-G---G--TCTCAGGCTCAAAC  100
            ||||||||| ||| || |||| ||||| |||||||||| |   |  ||||| ||| ||||
Sbjct  132  CGGCACTCGTCGTCCATAACCATCAGCTATCGTTCTACGGTTCGAATCTCAAGCTGAAAC  191

Query  101  CAACAAAATTCCGATGCTCTGCGTCGGCGCTTACGCCGCAACTTAAAGATACGCTGGAGA  160
            |||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct  192  CAACTAAATTCCGATGCTCAGCGTCGGCTCTTACGCCGCAACTTAAAGACACGCTGGAGA  251

Query  161  AACTGGTGAATTCGGAGAAAGTGGTTCTGTTCATGAAAGGAACGAGAGATTTCCCGATGT  220
            ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct  252  AACTGGTGAATTCGGAGAAAGTGGTTCTGTTTATGAAAGGAACGAGAGACTTCCCGATGT  311

Query  221  GTGGATTCTCCAACACTGTGGTTCAGATCGTGAAGAATTTGAATGTTCCTTTCGAAGATG  280
            ||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||
Sbjct  312  GTGGATTCTCCAACACTGTGGTTCAGATTTTGAAGAATCTGAATGTTCCTTTCGAAGATG  371

Query  281  TGAATATTCTGGAGAATGAGATCTTGAGGCAAGGACTTAAAGAGTATTCAAAT  333
            |||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct  372  TGAATATTCTGGAGAATGAGATGTTGAGGCAAGGACTTAAAGAGTATTCGAAT  424


 Score = 67.6 bits (36),  Expect = 7e-11
 Identities = 36/36 (100%), Gaps = 0/36 (0%)
 Strand=Plus/Plus

Query  1   ATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATA  36
           ||||||||||||||||||||||||||||||||||||
Sbjct  23  ATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATA  58



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15834340935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5