BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336550
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27540.1 | Symbols: PRA1.H | prenylated RAB acceptor 1.H | c... 723 0.0
> AT4G27540.1 | Symbols: PRA1.H | prenylated RAB acceptor 1.H |
chr4:13753210-13754745 REVERSE LENGTH=1050
Length=1050
Score = 723 bits (391), Expect = 0.0
Identities = 514/570 (90%), Gaps = 21/570 (4%)
Strand=Plus/Plus
Query 26 GGATAATCGCGGCGACAACAACAACAATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCG 85
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GGATAATCACGGCG---ACAACAACAATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCG 119
Query 86 TCCTCGATCCTGCTTTTGAATCTTGGCTCCGAGATTCCAGCTACCTCGAGCTCCTCGATC 145
||| |||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||
Sbjct 120 TCCCCGATCCTGCTTTCGAATCTTGGCTTCGAGATTCCGGTTACCTCGAGCTCCTCGATC 179
Query 146 ACCGCACCTCTGCTGCAGCCGCCGCCGCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTG 205
|||||||||| || || || || |||||||||||||||||||||||||||||||||||||
Sbjct 180 ACCGCACCTCCGCCGCTGCAGCTGCCGCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTG 239
Query 206 CCGCAACTTCTGCGGCGTCTGACGATGAA----CATCCATTACCGGTGGTTTCTTCGCTT 261
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 240 CCGCAACTTCTGCGGCATCTGACGATGTCGTTTCATCCATTACCGGTGGTTTCTTCGCTT 299
Query 262 CTCTTTTGTCTCGACGCGTCACTGTCTCTTCTCTTCTTACAATTAACCCTTTCTCCAAGC 321
|||| || ||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 300 CTCTCTTATCTCGACTCGTCACTGTCTCTTCTCTTCTTACTATTAACCCTTTCTCTAAGC 359
Query 322 TCTCCG---ATGATTTTTCCGGAGATACGCCACCGTGGACCACCGGTTTCTTTGGCAATT 378
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 360 TCTCCGCCGATGATTTTTCCGGAGATACGACACCGTGGACCACCGGTTTCATTGGCAATT 419
Query 379 GTGACTCTTATTCGTTTCCAACGTCTTCTCAGCAAGCGAGAATTAGAGTTCATGAGTAA- 437
|||||||||||||||| || |||||||||||||||||||||| |||||||||||| ||
Sbjct 420 GTGACTCTTATTCGTTCCCGTCGTCTTCTCAGCAAGCGAGAATGAGAGTTCATGAG-AAT 478
Query 438 ATCAAACGATTCGCTAGGAATTACACTACGTTATTCATCGTCTTCTTCGCTTGTGCACTA 497
|||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct 479 ATCAAACGATTCGCTAGGAATTACGCTACGTTGTTCATCGTCTTCTTTGCTTGTGCACTA 538
Query 498 TATCA-A----A-T-GCATTGGTGAGATTGTTAGCAAGCTTAGCCCTTTGGGTGCTATTC 550
||||| | | | ||||||||| ||||||||| ||||||||| ||||||| |||||||
Sbjct 539 TATCAGATGCCACTTGCATTGGTGGGATTGTTAGGAAGCTTAGCTCTTTGGGAGCTATTC 598
Query 551 AAATAGTGCAGTGCCA-GATGGAAATTTGA 579
||||| ||||||| | | |||||||||||
Sbjct 599 AAATACTGCAGTGATAAG-TGGAAATTTGA 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5