BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg336550 Length=579 Score E Sequences producing significant alignments: (Bits) Value AT4G27540.1 | Symbols: PRA1.H | prenylated RAB acceptor 1.H | c... 723 0.0 > AT4G27540.1 | Symbols: PRA1.H | prenylated RAB acceptor 1.H | chr4:13753210-13754745 REVERSE LENGTH=1050 Length=1050 Score = 723 bits (391), Expect = 0.0 Identities = 514/570 (90%), Gaps = 21/570 (4%) Strand=Plus/Plus Query 26 GGATAATCGCGGCGACAACAACAACAATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCG 85 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 GGATAATCACGGCG---ACAACAACAATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCG 119 Query 86 TCCTCGATCCTGCTTTTGAATCTTGGCTCCGAGATTCCAGCTACCTCGAGCTCCTCGATC 145 ||| |||||||||||| ||||||||||| ||||||||| | ||||||||||||||||||| Sbjct 120 TCCCCGATCCTGCTTTCGAATCTTGGCTTCGAGATTCCGGTTACCTCGAGCTCCTCGATC 179 Query 146 ACCGCACCTCTGCTGCAGCCGCCGCCGCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTG 205 |||||||||| || || || || ||||||||||||||||||||||||||||||||||||| Sbjct 180 ACCGCACCTCCGCCGCTGCAGCTGCCGCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTG 239 Query 206 CCGCAACTTCTGCGGCGTCTGACGATGAA----CATCCATTACCGGTGGTTTCTTCGCTT 261 |||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 240 CCGCAACTTCTGCGGCATCTGACGATGTCGTTTCATCCATTACCGGTGGTTTCTTCGCTT 299 Query 262 CTCTTTTGTCTCGACGCGTCACTGTCTCTTCTCTTCTTACAATTAACCCTTTCTCCAAGC 321 |||| || ||||||| |||||||||||||||||||||||| |||||||||||||| |||| Sbjct 300 CTCTCTTATCTCGACTCGTCACTGTCTCTTCTCTTCTTACTATTAACCCTTTCTCTAAGC 359 Query 322 TCTCCG---ATGATTTTTCCGGAGATACGCCACCGTGGACCACCGGTTTCTTTGGCAATT 378 |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 360 TCTCCGCCGATGATTTTTCCGGAGATACGACACCGTGGACCACCGGTTTCATTGGCAATT 419 Query 379 GTGACTCTTATTCGTTTCCAACGTCTTCTCAGCAAGCGAGAATTAGAGTTCATGAGTAA- 437 |||||||||||||||| || |||||||||||||||||||||| |||||||||||| || Sbjct 420 GTGACTCTTATTCGTTCCCGTCGTCTTCTCAGCAAGCGAGAATGAGAGTTCATGAG-AAT 478 Query 438 ATCAAACGATTCGCTAGGAATTACACTACGTTATTCATCGTCTTCTTCGCTTGTGCACTA 497 |||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| Sbjct 479 ATCAAACGATTCGCTAGGAATTACGCTACGTTGTTCATCGTCTTCTTTGCTTGTGCACTA 538 Query 498 TATCA-A----A-T-GCATTGGTGAGATTGTTAGCAAGCTTAGCCCTTTGGGTGCTATTC 550 ||||| | | | ||||||||| ||||||||| ||||||||| ||||||| ||||||| Sbjct 539 TATCAGATGCCACTTGCATTGGTGGGATTGTTAGGAAGCTTAGCTCTTTGGGAGCTATTC 598 Query 551 AAATAGTGCAGTGCCA-GATGGAAATTTGA 579 ||||| ||||||| | | ||||||||||| Sbjct 599 AAATACTGCAGTGATAAG-TGGAAATTTGA 627 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27829717438 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5