BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg336605

Length=753
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G34560.1 | Symbols:  | Protein of unknown function (DUF1184)...   436    1e-121


> AT1G34560.1 | Symbols:  | Protein of unknown function (DUF1184) 
| chr1:12653961-12654677 FORWARD LENGTH=543
Length=543

 Score =  436 bits (236),  Expect = 1e-121
 Identities = 322/363 (89%), Gaps = 7/363 (2%)
 Strand=Plus/Plus

Query  331  TATGTGTTTGTGACATATATAAAACCAAAGAATGGAGTCTATCAA-GATGGTGGCAAATC  389
            ||||||||||  |||||||| ||||| ||||||||||||||| || ||||||||||| ||
Sbjct  184  TATGTGTTTGAAACATATATCAAACCCAAGAATGGAGTCTAT-AAGGATGGTGGCAAGTC  242

Query  390  GATTCAATGGGAACAGTTCAAAACGTCTTCCTATC-ATTTTGCTTTTGGAGTCAGAGTTT  448
            ||  |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct  243  GAGCCAATGGGAACAGTTCAAAACGTTTTCCTATCAATTTT-CTTTTGGAGTCAGAGTTT  301

Query  449  TGGCTCGCATTGTTTCGATTCTCGAAATGGGTGGCCTAGTGAAACCGTCTGGTTTTGAAC  508
            |||||||||||||||| ||||| ||||| |||||| |||||||||||||||||||| |||
Sbjct  302  TGGCTCGCATTGTTTCAATTCTTGAAATCGGTGGCTTAGTGAAACCGTCTGGTTTTAAAC  361

Query  509  GCTACAAACAAGAAATTAAGAATCTAGAGGAGAATTTGA-AGTCTGTCAAGGATGTTTCA  567
             |||||| |||||  ||||||| ||||||||| |||||| | |||||||||||||| || 
Sbjct  362  ACTACAACCAAGAGCTTAAGAAGCTAGAGGAGCATTTGAGA-TCTGTCAAGGATGTATCG  420

Query  568  GCGGCGAATGGGTTTTCTAGAGAAGCTATAGAGTCTAACATTTTTCACTTGTGGAAGTCT  627
            | ||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||
Sbjct  421  GAGGCGAATGGGTTTGCGAGAGAAGCTATAGAGTCTAGCATTTTTCACTTGTGGAAGTCT  480

Query  628  CTCTTTGAAACAACACCGGAAATGATAAACCCTACTAAGAGTATAGTTATTGAGAT-TTT  686
            || |||||| ||||||| ||||||||| |||||| ||||| || |||| ||||| | |||
Sbjct  481  CTGTTTGAAGCAACACCAGAAATGATACACCCTAGTAAGACTAAAGTTCTTGAGCTGTTT  540

Query  687  TAG  689
            |||
Sbjct  541  TAG  543



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36570459016


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5