BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg336703

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05710.1 | Symbols:  | Pleckstrin homology (PH) domain super...   593    4e-169
  AT1G60490.1 | Symbols: ATVPS34, VPS34, PI3K | vacuolar protein ...  76.8    2e-13 


> AT5G05710.1 | Symbols:  | Pleckstrin homology (PH) domain superfamily 
protein | chr5:1715875-1716499 FORWARD LENGTH=625
Length=625

 Score =  593 bits (321),  Expect = 4e-169
 Identities = 361/381 (95%), Gaps = 0/381 (0%)
 Strand=Plus/Plus

Query  12   CGGCGGTCAGAGCAACAATTCCGACGACTACGGAGGCGTAGAGTTCTGGTCCAACCCAGA  71
            ||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct  95   CGGCGGTCAGAACAACAATTCCGAAGACTACGGAGGCGTAGAGTTCTGGTCAAACCCAGA  154

Query  72   ACGAACCGGATGGCTCACGAAACAGGGAGAGTACATCAAGACTTGGCGACGCCGCTGGTT  131
            ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct  155  ACGAACCGGCTGGCTCACGAAACAAGGAGAGTACATCAAGACTTGGCGACGCCGATGGTT  214

Query  132  CGTGCTCAAACAAGGGAAGCTCTTCTGGTTCAAAGACTCCGACGTCACGCGCGTCTCACG  191
            |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct  215  CGTGCTCAAACAAGGGAAACTCTTCTGGTTCAAAGACTCCGACGTCACGCGTGTGTCACG  274

Query  192  CCCTCGCGGTGTCGTCCCCGTCGCGTCGTGCTTAACCGCCAAAGGAGCGGAGGATGTCCT  251
            ||||||||||||||||||||| |  |||||||||||||| |||||||| |||||||| ||
Sbjct  275  CCCTCGCGGTGTCGTCCCCGTAGAATCGTGCTTAACCGCTAAAGGAGCAGAGGATGTACT  334

Query  252  CAACAAGCAAAACGCGTTCGAGCTATCGACGAGAGATGAGACTATGTACTTCATCGCTGA  311
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct  335  CAACAAGCAAAACGCGTTCGAGCTATCGACGAGAAATGAGACTATGTACTTCATTGCTGA  394

Query  312  TTCGGAGAAGGAGAAAGAAGATTGGATCAATTCCATTGGACGGTCCATCGTGCAGAACTC  371
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct  395  TTCGGAGAAGGAGAAAGAAGATTGGATCAATTCCATTGGACGTTCCATCGTGCAAAACTC  454

Query  372  CAGATCTGTTACCGATTCTGA  392
            |||||| ||||||||||||||
Sbjct  455  CAGATCCGTTACCGATTCTGA  475


> AT1G60490.1 | Symbols: ATVPS34, VPS34, PI3K | vacuolar protein 
sorting 34 | chr1:22285572-22290315 REVERSE LENGTH=2790
Length=2790

 Score = 76.8 bits (41),  Expect = 2e-13
 Identities = 45/47 (96%), Gaps = 0/47 (0%)
 Strand=Plus/Plus

Query  446  GGAGTTATCTCCGTCGCAGAGGAGAAAAAACCAGAGCTTTACATTGA  492
            |||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct  237  GGAGTTGTCTCCATCGCAGAGGAGAAAAAACCAGAGCTTTACATTGA  283



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23459346649


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5