BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg336753 Length=375 Score E Sequences producing significant alignments: (Bits) Value AT1G43810.1 | Symbols: | unknown protein; Has 6 Blast hits to ... 497 2e-140 > AT1G43810.1 | Symbols: | unknown protein; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:16580447-16580800 REVERSE LENGTH=354 Length=354 Score = 497 bits (269), Expect = 2e-140 Identities = 319/344 (93%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 7 AACAATCCTGCTCCTCTACTTGGTTTCAGAATTGCTCACCGTCAAGAGCAAGAAACAGAC 66 |||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| Sbjct 10 AACAATCCTGCTCCTCTACTTGGTTTCAGAATTGCTCACCTTCTCGAGCAAGAACCAGAC 69 Query 67 ACGAAAGACTTGACGATCAACGTCGTGACAGAGATACTCAAACATGAGTTTGGTTCCATA 126 |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 70 ACGAAAGACTTGACGATCAACGTCAAGACAGAGATACTCAAACATGAGTTTGGTCCCATA 129 Query 127 AAAAGTTCATTCTCGTTCTCACCACAGAAATTCTTCGAGGAAGACCTGAAGAAACAAGAA 186 || ||||||||||||||||||||||| |||||||||||||||||| | |||||||||||| Sbjct 130 AAGAGTTCATTCTCGTTCTCACCACACAAATTCTTCGAGGAAGACGTCAAGAAACAAGAA 189 Query 187 CTTTACTTCTTCCTGATAGCAGTTGGAATCGAAGAGGATGATGCAAAATTTATGATGATG 246 ||||| || |||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 190 CTTTATTTTTTCCTGATAGCAGTTGGAATCGAAGAGGATGACGCAAAACTTATGATGACC 249 Query 247 GACATGATTTCTTACGTCTTGAGAAATATTGATGAGTTACGAGGAGTTTTGACACTGTTG 306 |||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 250 GACATGATTTTTTACGTCTTGGGAAATATTGATGAGTTACGAGGAGTTTTGACATTGTTG 309 Query 307 TTCAAAGTTCAGTTCCCTTCACTCGAGCCAATAGAAGAGCACTA 350 || ||||| |||||||||||| ||||||| |||||||| ||||| Sbjct 310 TTGAAAGTGCAGTTCCCTTCATTCGAGCCGATAGAAGAACACTA 353 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17643979899 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5