BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336753
Length=375
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43810.1 | Symbols: | unknown protein; Has 6 Blast hits to ... 497 2e-140
> AT1G43810.1 | Symbols: | unknown protein; Has 6 Blast hits to
6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:16580447-16580800 REVERSE LENGTH=354
Length=354
Score = 497 bits (269), Expect = 2e-140
Identities = 319/344 (93%), Gaps = 0/344 (0%)
Strand=Plus/Plus
Query 7 AACAATCCTGCTCCTCTACTTGGTTTCAGAATTGCTCACCGTCAAGAGCAAGAAACAGAC 66
|||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 10 AACAATCCTGCTCCTCTACTTGGTTTCAGAATTGCTCACCTTCTCGAGCAAGAACCAGAC 69
Query 67 ACGAAAGACTTGACGATCAACGTCGTGACAGAGATACTCAAACATGAGTTTGGTTCCATA 126
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 70 ACGAAAGACTTGACGATCAACGTCAAGACAGAGATACTCAAACATGAGTTTGGTCCCATA 129
Query 127 AAAAGTTCATTCTCGTTCTCACCACAGAAATTCTTCGAGGAAGACCTGAAGAAACAAGAA 186
|| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||
Sbjct 130 AAGAGTTCATTCTCGTTCTCACCACACAAATTCTTCGAGGAAGACGTCAAGAAACAAGAA 189
Query 187 CTTTACTTCTTCCTGATAGCAGTTGGAATCGAAGAGGATGATGCAAAATTTATGATGATG 246
||||| || |||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 190 CTTTATTTTTTCCTGATAGCAGTTGGAATCGAAGAGGATGACGCAAAACTTATGATGACC 249
Query 247 GACATGATTTCTTACGTCTTGAGAAATATTGATGAGTTACGAGGAGTTTTGACACTGTTG 306
|||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 250 GACATGATTTTTTACGTCTTGGGAAATATTGATGAGTTACGAGGAGTTTTGACATTGTTG 309
Query 307 TTCAAAGTTCAGTTCCCTTCACTCGAGCCAATAGAAGAGCACTA 350
|| ||||| |||||||||||| ||||||| |||||||| |||||
Sbjct 310 TTGAAAGTGCAGTTCCCTTCATTCGAGCCGATAGAAGAACACTA 353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17643979899
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5