BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg336782

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G44608.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...   616    1e-175


> AT1G44608.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); 
BEST Arabidopsis thaliana protein match is: unknown protein 
(TAIR:AT1G21830.1); Has 49 Blast hits to 49 proteins 
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr1:16875119-16876258 REVERSE LENGTH=661
Length=661

 Score =  616 bits (333),  Expect = 1e-175
 Identities = 518/599 (86%), Gaps = 46/599 (8%)
 Strand=Plus/Plus

Query  1    ATGAAAGGACAGAACAAAAGCTCAACATCTTCTTGCAACATCCATCCAGTAGAGT-TTAT  59
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct  1    ATGAAAGGACAGAACAAAAGCTCAACATCTTCTTGTAACATCCATCCAGTAGA-TGTTAT  59

Query  60   TGAAGGTATATGTCCTCTCTGTCTTAACGAGAGGCTTCTGGTCCTGGCTTCTCTACAGAG  119
            ||||||| | ||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct  60   TGAAGGTGTGTGTCCTCTCTGTCTTAACGAGAGGCTTTTGGTCGTGGCTTCTCTACAGAG  119

Query  120  ACTACGCCCTCCA--T-CTCCTCCTTCCTACCAAACCATCCAAGAACCAAAAACCATCCT  176
            | |||||||||||  | ||||| |||||||||||||||| |     || |||||||||||
Sbjct  120  ATTACGCCCTCCATGTCCTCCTTCTTCCTACCAAACCAT-C-----CCGAAAACCATCCT  173

Query  177  TCAAAATTCTTCTAGAAAGAAACCCATCAGAATCTTCTCCTTCCTTAGTTTCTTCGAACT  236
            ||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||
Sbjct  174  TCAAAATTCTTCTAGAAAGAAACCCATCAGACTCTTCTCCTTCTTTAGCTTCTTCGAACT  233

Query  237  CCGACATCACAAGTCTGATCACAAAAACACCTCCATTATCAGTCCAGAAGATTCATTCAT  296
            ||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||
Sbjct  234  CCGACATCACAAGTCCGATCACCAGAACACCTCCATTATCAGTCCAGAAGATTCATTCAT  293

Query  297  TTCGATCAACTTCGAAGACAACAGAGCAACTTCATGGGAGAAAGGAAAAGAAAGTTTTCA  356
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||     | 
Sbjct  294  TTCGATCAACTTCGAAGACAACCGAGCAACTTCATGGGAGAAAGGAAAAGAAA-----C-  347

Query  357  GCCTTCATGGGATCGTCAATACCAACATGTCATGCTCCACACGAAGAAGGAGATTATTCC  416
            ||    |    ||    | | | ||||||||   |   |||||||||||||| || ||||
Sbjct  348  GC----A----AT----A-T-C-AACATGTC---C---ACACGAAGAAGGAGTTTGTTCC  386

Query  417  TCAGCCCATGCCACGTCCTC-TA-ACA-T-G-G-AGGAAACGGATTCGTCGGCTCTTACA  470
            |||| |||  |||| ||||| |  ||  | | | || |||||||||||| | ||||||||
Sbjct  387  TCAGTCCACACCACTTCCTCCTCTACTGTCGTGGAGAAAACGGATTCGTAGACTCTTACA  446

Query  471  CGTCATCAGTTTCAAGAGCCGGTCTCGAGCATGCCACTTGTCCGCCAAAGTTAAAGGTGA  530
            ||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||| ||||
Sbjct  447  CGTCATCAGTTTCAAAAGCCGGTCTAGAGCATGTCACTTGTCCGCCAAGGTTAAAAGTGA  506

Query  531  AGATGACTTGAGTAGAAGTTGGTTAAGGCCTTTGTCCCAGACC-AACAAGAAACTCTAA  588
            ||||||||||||||||||||||| ||||||||||||||  ||  |||| ||||||||||
Sbjct  507  AGATGACTTGAGTAGAAGTTGGTGAAGGCCTTTGTCCCCCACTTAACA-GAAACTCTAA  564



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28281824761


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5