BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336805
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45110.1 | Symbols: | Tetrapyrrole (Corrin/Porphyrin) Methy... 1585 0.0
> AT1G45110.1 | Symbols: | Tetrapyrrole (Corrin/Porphyrin) Methylases
| chr1:17052534-17054792 FORWARD LENGTH=1316
Length=1316
Score = 1585 bits (858), Expect = 0.0
Identities = 971/1025 (95%), Gaps = 9/1025 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAGACTTTGTCTTCCTTGTGT-TTCCTCCATTCGTGCTTCTTCTCTTTCGATTCT 59
||||||||| |||||||||||||| | || ||| ||||| | ||| |||| ||||||||
Sbjct 39 ATGGCGAGAGTTTGTCTTCCTTGT-TCTT--TCC-TTCGTACCTCTACTCTCTCGATTCT 94
Query 60 CTTCCGTTCTCCGATTCTCTCCAGAACCACCGGAATTTCATTTTGTTCGTCGTCGGAATT 119
||||||||| ||||||||||||| |||| ||| |||||||||||| ||||||||||| ||
Sbjct 95 CTTCCGTTCACCGATTCTCTCCACAACCGCCGCAATTTCATTTTGCTCGTCGTCGGAGTT 154
Query 120 CGCCGACTCTGTGA-CC-AGAGATGATTCAAAACGCGGTCCTCTCAAGCCTGGTCTTTAC 177
|||||||||||| | || || |||||||||||||||||||||||||||||||| ||||||
Sbjct 155 CGCCGACTCTGT-AGCCAAG-GATGATTCAAAACGCGGTCCTCTCAAGCCTGGGCTTTAC 212
Query 178 CTCGTCGGAACTCCAATCGGAAATCTCGAAGATATCACTTTACGTGCGATTCGTGTATTG 237
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 213 CTCGTCGGAACTCCAATCGGAAACCTCGAAGATATCACTTTACGTGCGATTCGTGTATTG 272
Query 238 AGATCTGCGGATGTGATACTCTCTGAGGACACGAGACACTCTGGGAAGTTGCTACAGTAT 297
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 273 AGATCTGCGGATGTGATACTCTCTGAGGATACAAGACACTCTGGGAAGTTGCTACAGTAT 332
Query 298 TACAATATTAAAGCTCAGCTTCTTAGTTATCACAAGTTCAACGAGGCCCAGAGAGAGCAG 357
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 333 TACAATATTAAAGCTCAGCTTCTTAGTTATCACAAGTTCAACGAGGCTCAGAGAGAACAA 392
Query 358 GCGGTGTTGACACGGTTGAAACAAGGAGAGATTGTAGCGCTTATCAGCGATGCGGGCACA 417
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 393 GCGGTGTTGACACGGTTGAAACAAGGAGAGATTGTTGCACTTATCAGCGATGCTGGCACA 452
Query 418 CCCGGAATTAGTGATCCTGGTACTCAACTTGCTAAAATGTGTGCGAAAGAAAATATAGAT 477
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 CCGGGAATTAGTGATCCCGGTACTCAACTTGCTAAAATGTGTGCGAAAGAAAATATAGAT 512
Query 478 GTGATTCCAATCCCTGGGGCTTGTGCTGTAGTTGCTGCTCTTTCTGCCTCTGGTTTGGAT 537
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 513 GTGATTCCAATCCCTGGGGCTTGTGCTGTAGTTGCTGCTCTTTCTGCATCTGGTTTGGAG 572
Query 538 ACAGATGAGTTCACATTCGTTGGATTTCTTCCTAAGCATTCTGGAACGAGGAAGGAGAGG 597
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 573 ACAGATGAGTTCACATTCGTTGGATTTCTTCCTAAGCATTCTGGAACAAGGAAGGAGAGG 632
Query 598 CTGATTGTTTCATCAAATGAGACAAGAACACAGATCTTTTATGTTCCCCCTCATAAATTG 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 633 CTGATTGTTTCATCAAATGAGACAAGAACACAGATCTTTTATGTTCCCCCTCATAAGTTG 692
Query 658 TCACAGTTTCTTGAAGAAACCTCTCCTTACTTTGGTGAATCAAGGCAATGTGTAATAGCT 717
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 693 TCACAGTTTCTTGAAGAAACAACCCCTTACTTTGGTGAATCAAGGCAATGTGTAATAGCT 752
Query 718 CGAGAGATTACAAAGCTGCATGAAGAGTTTTGGAGGGGTTCGATAGGGGAAGCCAAGGAA 777
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 753 CGAGAGATTACAAAGCTGCATGAAGAGTTTTGGAGGGGTTCGATAGCGGAAGCCAAGCAA 812
Query 778 GAGTTTCTGATCCGCCAACCAAAAGGAGAAATCACGCTTTTGATTGAAGGAAAGGAAGAA 837
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 813 GAGTTTCTGATCCGCCAACCAAAAGGAGAAATCACGCTTTTGATAGAAGGAAAGGAAGAA 872
Query 838 ACCAAAGCTGAAAATCCAACGGAGTCTCAACTTGAAGAAGAGTTAAGAGGGCTGATCTCT 897
|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 873 ACCAAAGCTGAAAATCCAACAGAGTCTCAACTTGAAGAAGAGTTGAGAGGCCTGATCTCT 932
Query 898 GATGGACATAGCCTTTCCACGGCGGTGAAAACGGTGGCGGAGAGAACATCAATGAGAAAG 957
||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 933 GATGGGCATAGCCTTTCCACGGCGGTGAAAACGGTTGCAGAAAGAACATCAATGAGAAAG 992
Query 958 AAAGAGGTATATTCGCTGGCATTGAAGAAATTCGGGAAGCAGATTCAGGTAGAAGATGAA 1017
||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 993 AAAGAAGTATATTCTCTGGCATTGAAGAAATTCGGGAAGCAGATTCGGGTAGAAGAAGAA 1052
Query 1018 GCTGA 1022
| |||
Sbjct 1053 GATGA 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5