BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg336806

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G45110.1 | Symbols:  | Tetrapyrrole (Corrin/Porphyrin) Methy...   475    1e-133


> AT1G45110.1 | Symbols:  | Tetrapyrrole (Corrin/Porphyrin) Methylases 
| chr1:17052534-17054792 FORWARD LENGTH=1316
Length=1316

 Score =  475 bits (257),  Expect = 1e-133
 Identities = 298/318 (94%), Gaps = 2/318 (1%)
 Strand=Plus/Plus

Query  69    GCAATGTGTAATAGCTCGAGAGATTACAAAGCTGCATGAAGAGTTTTGGAGAGGTTATAT  128
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||
Sbjct  737   GCAATGTGTAATAGCTCGAGAGATTACAAAGCTGCATGAAGAGTTTTGGAGGGGTTCGAT  796

Query  129   AGGGGAAGCCAAGCAAGAGTTTCTGATTCGCCAACCAAAAGGAGAAGTCACGCTTTTGAT  188
             || |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct  797   AGCGGAAGCCAAGCAAGAGTTTCTGATCCGCCAACCAAAAGGAGAAATCACGCTTTTGAT  856

Query  189   TGAAGGAAAGGAAGAAACCAAAGCTGAAAATCCAACGGAGTCTCAACTTGAAGAAGAGTT  248
              ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  857   AGAAGGAAAGGAAGAAACCAAAGCTGAAAATCCAACAGAGTCTCAACTTGAAGAAGAGTT  916

Query  249   AAGAGGGCTGATCTCTGATGGACATAGCCTTTCCACGGCGGTGAAAACGGTGGCGGAAAG  308
              ||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct  917   GAGAGGCCTGATCTCTGATGGGCATAGCCTTTCCACGGCGGTGAAAACGGTTGCAGAAAG  976

Query  309   AACATCAATGAGAAAGAAAGAGGTATATT-TGATGGCATTGAAGAAATTCGCGAAGCAGA  367
             ||||||||||||||||||||| ||||||| |  |||||||||||||||||| ||||||||
Sbjct  977   AACATCAATGAGAAAGAAAGAAGTATATTCTC-TGGCATTGAAGAAATTCGGGAAGCAGA  1035

Query  368   TTCAGGTAGAAGATGAAG  385
             ||| ||||||||| ||||
Sbjct  1036  TTCGGGTAGAAGAAGAAG  1053



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18699602628


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5