BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg336810

Length=1041
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G39550.1 | Symbols:  | Galactose oxidase/kelch repeat superf...   147    3e-34


> AT4G39550.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr4:18380526-18381905 REVERSE LENGTH=1380
Length=1380

 Score =  147 bits (79),  Expect = 3e-34
 Identities = 143/172 (83%), Gaps = 11/172 (6%)
 Strand=Plus/Plus

Query  838   AAACTGGCGGATTATGGTGGAAAGATGGCGGTTTTTTGGGACAAG-TA-TGAG--C-G-T  891
             ||| ||||||||||||||||||||||||||||||| ||||||||| |  |||   | | |
Sbjct  1013  AAAATGGCGGATTATGGTGGAAAGATGGCGGTTTTCTGGGACAAGATTGTGACTTCCGAT  1072

Query  892   AAAAG-TG-AAGG-CAAGATGATTTGGTGTGCTATGATTGCGCTCGAAAGACACAACA-C  947
              |  | || |||  ||||||||||| ||||||| |||||||||| ||||| | ||||| |
Sbjct  1073  GATGGATGTAAGAACAAGATGATTTTGTGTGCTGTGATTGCGCTTGAAAGGCGCAACAGC  1132

Query  948   TGAAGATATTTGGGGGAATGTCGAGTGGTGTGACGCAGTGCTTACAGTTCCC  999
              ||||| ||||||||||| |||||||||  ||||||||| ||||||||||||
Sbjct  1133  -GAAGAGATTTGGGGGAAGGTCGAGTGGCATGACGCAGTTCTTACAGTTCCC  1183



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 51037893352


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5