BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336820
Length=537
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23600.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 246 1e-64
AT1G78510.1 | Symbols: SPS1 | solanesyl diphosphate synthase 1 ... 95.3 5e-19
AT5G17310.2 | Symbols: UGP2 | UDP-glucose pyrophosphorylase 2 |... 63.9 1e-09
AT3G03250.1 | Symbols: UGP, UGP1, AtUGP1 | UDP-GLUCOSE PYROPHOS... 58.4 7e-08
> AT3G23600.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:8473775-8475858 FORWARD LENGTH=981
Length=981
Score = 246 bits (133), Expect = 1e-64
Identities = 151/160 (94%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 378 TCTAGCTTCCAAACCCGAGATGAATAGTTACGTGAAGATACACCCGAAAGTGTCACACGG 437
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 619 TCTATCTTCCAAACCCGAGGTGAATAGTTACGTGAAGATACACCCGAAAGTGTCACACGG 678
Query 438 TTGGACAGTTAGATACAGCATCGATGATCCAGAGGCGGTTAAAGCTGCAGAAGAAGCTCA 497
|||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 679 ATGGACAGTTAGATACAACATCGATGAACCAGAGGCGGTTAAAGCAGCAGAAGAAGCTCA 738
Query 498 CAAAGAGATGCTTGATTGGTTTGTGACTTACGTCAAATGA 537
||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 739 CAAGGAGATGCTTGATTGGTTTGTGACCTACATCAAATGA 778
> AT1G78510.1 | Symbols: SPS1 | solanesyl diphosphate synthase
1 | chr1:29535285-29537417 REVERSE LENGTH=1600
Length=1600
Score = 95.3 bits (51), Expect = 5e-19
Identities = 57/60 (95%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 127 GGGGAGTTGCAAAGCGGTGCCGACGAAATCAAAGGAGATCTCTTTGCTCAATGCTTTTGG 186
||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct 389 GGGGAGTTGCAAAGCGGTGCCAACGAAATCAAAGGAGATCTCTTTGCTCAATGGTATTGG 448
> AT5G17310.2 | Symbols: UGP2 | UDP-glucose pyrophosphorylase 2
| chr5:5696645-5700922 REVERSE LENGTH=1800
Length=1800
Score = 63.9 bits (34), Expect = 1e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 179 GCTTTTGGAGATTGCTCAGGTTCCTGATGAACAT 212
||||||||||||||||||||||||||||||||||
Sbjct 884 GCTTTTGGAGATTGCTCAGGTTCCTGATGAACAT 917
> AT3G03250.1 | Symbols: UGP, UGP1, AtUGP1 | UDP-GLUCOSE PYROPHOSPHORYLASE
1 | chr3:749390-754159 REVERSE LENGTH=1926
Length=1926
Score = 58.4 bits (31), Expect = 7e-08
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 179 GCTTTTGGAGATTGCTCAGGTTCCTGATGAACAT 212
|||| |||||||||||||||||||||||||||||
Sbjct 949 GCTTCTGGAGATTGCTCAGGTTCCTGATGAACAT 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25719883264
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5