BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336830
Length=2094
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53780.2 | Symbols: | peptidyl-prolyl cis-trans isomerases;... 1572 0.0
AT1G53750.1 | Symbols: RPT1A | regulatory particle triple-A 1A ... 1267 0.0
AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:2... 614 1e-174
> AT1G53780.2 | Symbols: | peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP
binding;nucleotide
binding;ATPases | chr1:20073996-20077748 REVERSE LENGTH=2114
Length=2114
Score = 1572 bits (851), Expect = 0.0
Identities = 1026/1110 (92%), Gaps = 14/1110 (1%)
Strand=Plus/Plus
Query 989 ATACTGGGTTATCTCTTCCCAGTCAATGGGATCTCATAGCTGATAAACAGATGATTG-TT 1047
||||||| ||| ||| ||||| |||||||||||| || ||||||| || |||| ||
Sbjct 799 ATACTGGTTTAGCTCCTCCCAATCAATGGGATCTTGTATCTGATAAGCAAATGA-TGCAA 857
Query 1048 GACGAGCAGCCTCTGCATGTTGCGACATGCACACAGATAATCAGTCCAAATACTGAAGAC 1107
|| ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 858 GAGGAGCAACCTCTGCTTGTTGCGACATGCACACAGATAATCAGTCCAAACACTGAAGAT 917
Query 1108 GCAAAGTATGTCGTTGATATGGAAAAGATAGGCAAGTTTGTTGTTGGACTTGGCGATAAA 1167
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 918 GCAAAGTATGTCGTTGATATCAAAAAGATAGGCAAGTATGTTGTTGGACTTGGCGATAAA 977
Query 1168 TCTTCTCCCACTGAGATAGAAGTAGGAATGCGTGTGGGAGTTGAT-AGGAAGAAATATCA 1226
||||||||||||| ||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 978 GCTTCTCCCACTGACATAGAAGCAGGAATGCGTGTGGGAGTTGATCA-GAAGAAATATCA 1036
Query 1227 GATACAGATTCCTCTACCTCCAAAGACTGATCCTCGTGCT-ATCATGATGACGGTTGAAG 1285
|||||||||||||||||||||||||| ||||||| ||| | | |||||||||||||||||
Sbjct 1037 GATACAGATTCCTCTACCTCCAAAGATTGATCCTAGTG-TGACCATGATGACGGTTGAAG 1095
Query 1286 AGAAACCGGACATAACTTACTGTGATATCGGTGGCTGTGCAAGGAGCAGATTGAGAAGAT 1345
||||||| || ||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1096 AGAAACCTGATGCAACTTACAGTGATATCGGTGGC--TGCAAGGAGCAGATTGAGAAGAT 1153
Query 1346 TAGAGAGGTATGTTGTTGAACTACCAATGCTTCATCCAGAGAAATTTGTGAAGCTTGGAA 1405
|||||| | || |||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1154 TAGAGA-G---GTCGTTGAACTGCCAATGCTTCATCCAGAGAAATTTGTGAGGCTTGGAA 1209
Query 1406 TAGATCCTCCCAAGGGCGTTCTTTGCTATGGTCCTCCGGGTA-CTGGAAAAACCCTTGTG 1464
|||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||||
Sbjct 1210 TAGATCCTCCCAAGGGTGTTCTTTGCTATGGTCCTCCTGGTAGC-GGAAAAACCCTTGTC 1268
Query 1465 GCTAGAGCTGTAGCTAATAGAACCGGTGCTTGCTTTATCAGGATTATTGGCAGTGAGCTC 1524
||||||||||| || |||||||| |||||||||||||||||| || ||||||||||||||
Sbjct 1269 GCTAGAGCTGTGGCGAATAGAACTGGTGCTTGCTTTATCAGGGTTGTTGGCAGTGAGCTC 1328
Query 1525 GTTCAGAAGTACATCGGTGAAGGAGCAAGGATGGTTCGTGAACTGTTTCAGATGGCACGC 1584
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1329 GTTCAGAAGTACATTGGTGAAGGAGCTAGGATGGTTCGTGAACTGTTTCAGATGGCACGG 1388
Query 1585 TCAAAGAAAGCTTGCATTTTGTTCATTGACGAAATCGATGCCATTGGTGGTGCAAGATTT 1644
|||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 1389 TCAAAGAAAGCTTGCATTTTGTTCTTTGACGAAATTGATGCCATTGGCGGTGCAAGATTT 1448
Query 1645 GATGACGGTGTAGGCGGTGATAATGAAGTCCAACGTACTATGCTTGAGATTGTGAATCAG 1704
||||||||||||||| |||||||||||||||||||||| |||||||||||| || |||||
Sbjct 1449 GATGACGGTGTAGGCAGTGATAATGAAGTCCAACGTACCATGCTTGAGATTTTGTATCAG 1508
Query 1705 CTTGATGGGTTTGACGCACGTGGTAACATCAAGGTTCTTATGGCAACAAACAGGCCTGAC 1764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 CTTGATGGGTTTGACGCACGTGGTAACATCAAGGTTCTTATGGCAACAAACAGGCCTGAC 1568
Query 1765 ATACTGGACCCTGCTCTTTTACGTCCTGGACGTCTTGACCGCAAGATTGAGTTTTGTCTG 1824
||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1569 ATACTAGACCCAGCTCTTTTACGTCCTGGACGTCTTGACCGCAAGGTTGAGTTTTGTCTG 1628
Query 1825 CCTGATCTGGAGAGCAGAACACAGATCTTCAAGATTCACACACGAACCATGAACTGCGAA 1884
|||||||||||| |||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 1629 CCTGATCTGGAGGGCAGAACACAGATCTTCAAGATTCACACACGAACAATGAGTTGTGAA 1688
Query 1885 AGAGACATCCGGTTTGAACTCCTTGCTGGTCTCTGCCCAAATTCAACAGGAGCTGATATC 1944
||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1689 AGAGACATCCGGTTTGAACTCCTTGCTGGCCTCTGCCCAAACTCAACCGGAGCTGATATC 1748
Query 1945 AGAAGTGTGTGCATAGAAGCCGGAATGTATGCAATAGGAGCTAGGAGAAAGGCTGTGAGT 2004
|||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||| |
Sbjct 1749 AGAAGTGTATGCATAGAAGCCGGAATGTATGCAATCGGAGCTAGGAGAAAGTCTGTGACT 1808
Query 2005 GAGAAAGACTTTCTGGACGCAGTGAACAAAGTGGTTAAAGGCTATCAAAAGTTCAGTGCA 2064
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1809 GAGAAGGACTTTCTGGACGCAGTGAACAAAGTTGTTAAAGGTTATCAAAAGTTCAGTGCA 1868
Query 2065 ACTCCCAAGTATATGGCCTACTACATTTAG 2094
|| |||||||||||||||||||||||||||
Sbjct 1869 ACACCCAAGTATATGGCCTACTACATTTAG 1898
> AT1G53750.1 | Symbols: RPT1A | regulatory particle triple-A 1A
| chr1:20065714-20068466 REVERSE LENGTH=1630
Length=1630
Score = 1267 bits (686), Expect = 0.0
Identities = 975/1111 (88%), Gaps = 34/1111 (3%)
Strand=Plus/Plus
Query 989 ATACTGGGTTATCTCTTCCCAGTCAATGGGATCTCATAGCTGATAAACAGATGATTG-TT 1047
||||||| ||| ||| |||||||||||||||||| || ||||||| || |||| ||
Sbjct 327 ATACTGGTTTAGCTCCTCCCAGTCAATGGGATCTTGTATCTGATAAGCAAATGA-TGCAA 385
Query 1048 GACGAGCAGCCTCTGCATGTTGCGACATGCACACAGATAATCAGTCCAAATACTGAAGAC 1107
|| ||||| |||||||| ||||||| ||||||| |||| || |||||||| |||||||||
Sbjct 386 GAAGAGCAACCTCTGCAGGTTGCGAGATGCACAAAGATTATAAGTCCAAACACTGAAGAC 445
Query 1108 G-CAAAGTATGTCGTTGATATG-GAAA-AGATAGGC-AAGTTTGTTGTTGGACTTGGCGA 1163
| |||| || ||| | | ||| ||| | || || |||||||||||||||||||||||
Sbjct 446 GCCAAA-TACGTC-AT-AAATGTCAAACAAAT-TGCTAAGTTTGTTGTTGGACTTGGCGA 501
Query 1164 TAAA-TCTTCTCCCACTGAGATAGAAGTAGGAATGCGTGTGGGAGTTGATAGGAAGAAAT 1222
|||| | |||||||||||| || || | ||| |||||||| ||||||||| |||| ||||
Sbjct 502 TAAAGT-TTCTCCCACTGATATTGAGGAAGGCATGCGTGTTGGAGTTGATCGGAATAAAT 560
Query 1223 ATCAGATACAGATTCCTCTACCT-CCAAAGACT-GATCCT--CGTGCTATCATGATGACG 1278
||||||| ||||||||||||||| ||||| | | |||||| |||| | |||||||||
Sbjct 561 ATCAGATTCAGATTCCTCTACCTCCCAAA-A-TCGATCCTAGCGTG--ACCATGATGACT 616
Query 1279 GTTGAAGAGAAACCGGACATAACTTACTGTGATATCGGTGGCTGTGCAAGGAGCAGATTG 1338
|| ||||||||||| || |||||||| |||| | ||||| ||||||||||||||||
Sbjct 617 GTCGAAGAGAAACCTGATGTAACTTACAATGATGTTGGTGG--ATGCAAGGAGCAGATTG 674
Query 1339 AGAAGATTAGAGAGGTATGTTGTTGAACTACCAATGCTTCATCCAGAGAAATTTGTGAAG 1398
|||||| | | || | | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 675 AGAAGA-T-GCGA-G-AGGTTGTTGAACTGCCAATGCTTCATCCAGAGAAATTTGTGAAG 730
Query 1399 CTTGGAATAGATCCTCCCAAGGGCGTTCTTTGCTATGGTCCTCCGGGTACTGGAAAAACC 1458
||||||||||||||||||||||| ||||| ||||| || ||||| |||||||| |||||
Sbjct 731 CTTGGAATAGATCCTCCCAAGGGTGTTCTCTGCTACGGACCTCCTGGTACTGGTAAAACT 790
Query 1459 CTTGTGGCTAGAGCTGTAGCTAATAGAACCGGTGCTTGCTTTATCAGGATTATTGGCAGT 1518
||| ||||||||||||| || || ||||||| |||||||||||||||| ||||||| |||
Sbjct 791 CTTCTGGCTAGAGCTGTGGCCAACAGAACCGATGCTTGCTTTATCAGGGTTATTGGAAGT 850
Query 1519 GAGCTCGTTCAGAAGTACATCGGTGAAGGAGCAAGGATGGTTCGTGAACTGTTTCAGATG 1578
||||| ||||||||||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct 851 GAGCTTGTTCAGAAGTATGTTGGTGAAGGAGCTAGGATGGTTCGTGAACTGTTTCAGATG 910
Query 1579 GCACGCTCAAAGAAAGCTTGCATTTTGTTCATTGACGAAATCGATGCCATTGGTGGTGCA 1638
||||| || |||||||| |||||| ||||| |||||||| | ||||||||||||||||||
Sbjct 911 GCACGGTCCAAGAAAGCCTGCATTGTGTTCTTTGACGAAGTTGATGCCATTGGTGGTGCA 970
Query 1639 AGATTTGATGACGGTGTAGGCGGTGATAATGAAGTCCAACGTACTATGCTTGAGATTGTG 1698
||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 971 AGATTTGATGATGGTGTTGGTGGTGATAACGAAGTCCAACGTACTATGCTTGAGATTGTG 1030
Query 1699 AATCAGCTTGATGGGTTTGACGCACGTGGTAACATCAAGGTTCTTATGGCAACAAACAGG 1758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 AATCAGCTTGATGGGTTTGACGCACGTGGTAACATCAAGGTTCTTATGGCAACAAACAGG 1090
Query 1759 CCTGACATACTGGACCCTGCTCTTTTACGTCCTGGACGTCTTGACCGCAAGATTGAGTTT 1818
||||||| ||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1091 CCTGACACACTAGACCCAGCTCTTTTACGTCCTGGACGTCTTGACCGTAAGGTTGAGTTT 1150
Query 1819 TGTCTGCCTGATCTGGAGAGCAGAACACAGATCTTCAAGATTCACACACGAACCATGAAC 1878
|||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1151 GGTCTACCTGACCTGGAGAGCAGAACACAGATCTTCAAGATTCACACAAGAACCATGAAC 1210
Query 1879 TGCGAAAGAGACATCCGGTTT-GAACTCCTTGCTGGTCTCTGCCCAAATTCAACAGGAGC 1937
||||||||||||||||| ||| |||||||||||| | ||||||||||| ||||| |||||
Sbjct 1211 TGCGAAAGAGACATCCG-TTTCGAACTCCTTGCTCGCCTCTGCCCAAACTCAACGGGAGC 1269
Query 1938 TGATAT-CAGAAGTGTGTGCA-TAGAAGCCGGAATGTATGCAAT-AGGAGCTAGGAGAAA 1994
|||||| | ||||||| |||| | ||||| |||||||| ||||| || ||||||||||||
Sbjct 1270 TGATATTC-GAAGTGTATGCACT-GAAGCAGGAATGTACGCAATCAG-AGCTAGGAGAAA 1326
Query 1995 GGCTGTGAGTGAGAAAGACTTTCTGGACGCAGTGAACAAAGTGGTTAAAGGCTATCAAAA 2054
| |||||| ||||||||||||||| ||||||||||||||||| ||||||| || |||||
Sbjct 1327 GACTGTGACTGAGAAAGACTTTCTAGACGCAGTGAACAAAGTCATTAAAGGTTACCAAAA 1386
Query 2055 GTTCAGTGCAACTCCCAAGTATATGGCCTAC 2085
||||||||| |||||||||||||||| ||||
Sbjct 1387 GTTCAGTGCCACTCCCAAGTATATGGTCTAC 1417
> AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:20056533-20059638
FORWARD LENGTH=1770
Length=1770
Score = 614 bits (332), Expect = 1e-174
Identities = 759/960 (79%), Gaps = 50/960 (5%)
Strand=Plus/Plus
Query 1 ATGTCAGTTCTTATTAG-GACAAGCCTAGGGGATATAGTGACTGATC-TCTACACAGATA 58
||||||||||||||| | ||| ||||| || |||||||| | ||| | || || | ||||
Sbjct 120 ATGTCAGTTCTTATT-GTGACGAGCCTTGGTGATATAGTAATTGACCTTC-ACTCGGATA 177
Query 59 AA-GCCCCTAAAACCTGCAATAATTTTCTCAAGCTATGC-CGTATGAAGTATTACAATGG 116
|| | |||| || ||||| || || || ||||| ||| | || ||||| ||||||||
Sbjct 178 AATG-CCCTTTGACTTGCAAGAACTTCCTTAAGCTTTGCAAG-ATCAAGTACTACAATGG 235
Query 117 GTGCCTTATCCACACAGT---AAAGGATTCCATAGCAGAAACAGGTGATCCAACAGGAAC 173
||| ||| | ||||| || |||||||| || |||| | || ||||||||||| || ||
Sbjct 236 GTGTCTTTTTCACACTGTGCAAAAGGATTTCACAGCACAGACTGGTGATCCAACTGGTAC 295
Query 174 AGGG-TCTGGTGGAGACTCAATATACAAATTTCTTG-AAGGTGACCATGCTCGGTTCTT- 230
||| |||||||||| ||||| |||||||||| || | ||||| || |||| ||| ||
Sbjct 296 -GGGAGCTGGTGGAGATTCAATCTACAAATTTC-TGTACGGTGAGCAGGCTC-GTTTTTA 352
Query 231 CAGCGAAGAGATTTGCCCTGAATTGAAACATTCAAAGACTGGCACTGTTGCTATGGTTAG 290
|| || |||||| | ||| || |||||||||||||| ||||||||||| |||| ||
Sbjct 353 CAAAGATGAGATTCATCTTGATTTAAAACATTCAAAGACCGGCACTGTTGCAATGGCCAG 412
Query 291 TTCTGGTGAAAATCTGAATGCTTCCCAGTTCTATATCACACTTTGCGATGATCTT-GACC 349
| ||| || ||||| |||||||||||||||||| |||||||| | |||||| || |||
Sbjct 413 TGGTGGAGAGAATCTCAATGCTTCCCAGTTCTATTTCACACTTCGTGATGAT-TTGGACT 471
Query 350 ATCTTGATGGGAAACACACTGTGTTTGGGGAGGTTG-TCGAGGGGTTTGACGTTTTGACT 408
|||||||||||||||||||||||||||| || ||| | |||||||||||| |||||||
Sbjct 472 ATCTTGATGGGAAACACACTGTGTTTGGACAGATTGCT-GAGGGGTTTGACACTTTGACT 530
Query 409 AGTCTAGCCAAAGTTTCTGTTGATGCGAAGAACAGACCCTGTAAAAACATAAGAAT-AGA 467
|| || ||| || ||||||| ||||||||||||||| ||| ||||| ||||| | |
Sbjct 531 AGGATAAATGAAGCTTATGTTGATCCGAAGAACAGACCCTATAAGAACATTAGAATCA-A 589
Query 468 GCACACATATATACTTGAAGATCCATTTGATGATCTCCCACAACTGGCTGAATTGATACC 527
||||||| |||||||||| |||||||||||||||| |||||| ||||||||| |||| ||
Sbjct 590 GCACACACATATACTTGATGATCCATTTGATGATCCCCCACAGCTGGCTGAAATGATGCC 649
Query 528 AGATACTTCCCCTGAGGGAAAACCGAAGGAAGAGGTCACAGATGACGGGCGACTCGAATA 587
|||| |||||||||| ||||||||||| |||||||||| |||||||| ||| || ||| |
Sbjct 650 AGATGCTTCCCCTGAAGGAAAACCGAAAGAAGAGGTCAAAGATGACGTGCGGCTTGAAGA 709
Query 588 TGATTGGGTTCCAACAGATGAAGAACTTGGTCCTCAGGAACTGGAGGAGGTCATCAACAA 647
|||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| | |
Sbjct 710 TGATTGGGTTCCAATGGATGAAGAACTTGGTGCTCAGGAACTGGAGGAGGTTATCCGCGA 769
Query 648 AAACGCTGCCCATTCAAGTGCTGTTTTACTTGAAACTAAAGAAGATATCCCTGAGGCTGT 707
||| || |||||||||||||||||| ||||||||| || || ||||||||| |||||||
Sbjct 770 AAAGGCAGCCCATTCAAGTGCTGTTGTACTTGAAAGTATAGGAGATATCCCCGAGGCTGA 829
Query 708 GG-AGGAT-TC-T-AGCACTTTGCT-TTACATATGGGGTTTGAATCCT-TGTACTGATGC 761
|| | | || | | || | |||| || | | || ||||||| || ||||| |
Sbjct 830 GGTAAAACCTCCTGA-CAATGTGCTGTT-CGTCTGCAAACTGAATCCAGTG-ACTGAGG- 885
Query 762 A-GATGGCCTCAACACCATTTTTTCCCGCTTTGGAACAGTCATCTCGGTTCGA-GTCCTC 819
| || | |||| | ||||||||||| ||||||||||| || | |||| | || || ||
Sbjct 886 ATGAAGACCTCCATACCATTTTTTCACGCTTTGGAACCGTTGTATCGGCT-GATGTAATC 944
Query 820 CGGGATCGCAAGACTGGTGAGAGCTTAG-GTTGTGCATTAATCCAGTTTGAAAATGAGGT 878
|||||| |||||| ||||| || || | | | ||| || || ||||||| || |||
Sbjct 945 CGGGATTTCAAGACAGGTGACAGTTT-GTGCTATGCTTTTATAGAGTTTGAGAACAAGGA 1003
Query 879 -TGCAAGCAAAGAAGCCCGT-CTTGT--GATGGATAATTG-TACT-ATCGATGATAGACG 932
| || || || |||| || ||| | |||||| ||| | | || ||||||||||||||
Sbjct 1004 GT-CATGCGAACAAGC--GTACTT-TAAGATGGACAAT-GCT-CTGATCGATGATAGACG 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103814727060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5