BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336831
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53790.2 | Symbols: | F-box and associated interaction doma... 1266 0.0
AT1G43781.1 | Symbols: | Pseudogene of AT1G53790; F-box family... 928 0.0
> AT1G53790.2 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:20079081-20081455 REVERSE LENGTH=1852
Length=1852
Score = 1266 bits (685), Expect = 0.0
Identities = 978/1114 (88%), Gaps = 41/1114 (4%)
Strand=Plus/Plus
Query 37 ATCCCAATCGATGTCCTCATGGATATATTTTCGAGAGTTCCTGCAAAGTCTATAGCTATG 96
||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 305 ATCCCGATCGATCTCCTCATGGATATCTTTTCGAGAGTTCCTGCAAAGTCTATAGCTAGG 364
Query 97 TTTCGTTGCGTATCGAAATTCTGGGATTCAATACTTTGCCATCCTGATTTCACA-GAGTT 155
|||||||||||||| ||| ||||||| || |||||||| | ||||||||||| | |||||
Sbjct 365 TTTCGTTGCGTATCCAAACTCTGGGAATCCATACTTTGTCGTCCTGATTTCA-AGGAGTT 423
Query 156 GTAT-ATGAATACGTCTTCGATTCGTCAACC-TCTGC-TCTTTTTCACCTTGGAAGAT-A 211
|| | |||| || |||||||||||||| ||| | ||| || |||||||||| ||||| |
Sbjct 424 GT-TCATGACTATGTCTTCGATTCGTCCACCGT-TGCTTC-TTTTCACCTTCCAAGATGA 480
Query 212 --ATGGCAAGTTGTTCTTCTTCTCTTCACCTCACCCTCAGAATCC-TCCAGATGAGAACA 268
||||||| ||||||||||||||||||||||||||||||| ||| | | | ||||| |
Sbjct 481 TGATGGCAATTTGTTCTTCTTCTCTTCACCTCACCCTCAGATTCCATGTA-ACGAGAATA 539
Query 269 CATCTCTTGTACCCACCCGTTATCATGTTCACCATAACCATTCTCCTACAGATT-TTTCA 327
| ||||||||||||||||||||||||||| | || || | || ||||||| |||
Sbjct 540 CGTCTCTTGTACCCACCCGTTATCATGTT---C--AA-CA-T-ACC-ACAGATTCTTT-T 589
Query 328 TCTGAAGTTAGTTTTCCTCTTCGTGGATTCGTCTGTAGTCGAGATAAGGGAAGTCTAGAT 387
|||||| || ||| ||||||| |||||||| ||||| | |||| |||| ||| |||||||
Sbjct 590 TCTGAAATTGGTTCTCCTCTTTGTGGATTCATCTGTCGCCGAGGTAAGAGAAATCTAGAT 649
Query 388 ACTATGGTTATTTGCAACCCTGTCACAGGAGAGTTTGTATCCTTACCTAAGGTGGAGTTG 447
|||||||| ||||| ||||| ||||| ||||||| ||||||||||| || ||||| ||
Sbjct 650 ACTATGGTAATTTGTAACCCAGTCACGGGAGAGTCCGTATCCTTACCCAAAGTGGAACTG 709
Query 448 AAGAGTGTTAATACTGAGACAAGACCTTATTTAGGGTATGATCCGAT-CGACAAACAGTT 506
|||||| |||||||||||||||||||||||||||| ||||||||| | || ||||||| |
Sbjct 710 AAGAGTATTAATACTGAGACAAGACCTTATTTAGGATATGATCCGGTCCG-CAAACAGCT 768
Query 507 AAAAGTATTGTGCATCAAGTTC-GATGATATCCCAAATACGTGTGATGAGCATCAAGTTT 565
||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 769 AAAGGTATTGTGCATCAAG-TCTGATGATATCCCAAATACGTGTGATGAGCATCAAGTTT 827
Query 566 TGACATTGGAGAATGGAAAACATTTATGGAGAACAATCCAATGCAAACCCCATTATCCTA 625
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TGACATTGGAGAATGGAAACCATTTATGGAGAACAATCCAATGCAAACCCCATTATCCTA 887
Query 626 AATCTGATGGAATTTGCATAGATGGTACTTTGTATTATACAGCAGGGTTCGATATGCGGA 685
||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 888 AATCTGATGGAATATGCATAGATGGTATTTTGTATTATACAGCTGGGTTCGATATGCGGG 947
Query 686 TAAGCGTTTCTATGATAGTGTGCTTTGATGTTAGGTCTGAGAAGTTTAGCTTTATCAACA 745
||| ||||||||| |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 948 CAAGGGTTTCTATGGTAGTGTGCTTTGATGTGAGGTCTGAAAAGTTTAGCTTTATCAACA 1007
Query 746 TAGATGAATGCATGTTGATGACTG-CTTCTTGTACTTTGATCAACTACAAGGGTAAACTA 804
|| ||| || ||||||||||| || || |||||||| | |||||||||||||||||||||
Sbjct 1008 TACATGTATTCATGTTGATGAATGACT-CTTGTACTCTAATCAACTACAAGGGTAAACTA 1066
Query 805 GGTGCACTTCAGTTTTCATTTTTGCCTCCAAAACGTCTTGAG-TTCTGGGTTCTAC-AAG 862
||||||||||||||| ||| |||| |||||||||||||| || |||||||||||| ||
Sbjct 1067 GGTGCACTTCAGTTTACATGTTTGTCTCCAAAACGTCTT-AGGTTCTGGGTTCTAGTAA- 1124
Query 863 ATGCTCA-AAAATATATATGGTCCAAA-GATATCTACACATTGCCTCCTTTTTGGAACAA 920
||||| | |||| |||||||| ||||| | |||||| ||||||||||||| ||||||||
Sbjct 1125 ATGCTGAGAAAA-ATATATGGACCAAATG-TATCTATGCATTGCCTCCTTTGTGGAACAA 1182
Query 921 CGTAGTAGTTAAGCGTACCGAGTTAGTCATTGTTGGAATGACTCCTGGAGGTGAAGTTGT 980
| | ||||| ||| ||| ||||||| |||||||||||||||| |||||||||||||||
Sbjct 1183 C-T--TAGTTCAGCATACGGAGTTAGCCATTGTTGGAATGACTGATGGAGGTGAAGTTGT 1239
Query 981 GTTGACACCGTACTGTCTGGTAGACGCATTTTACGTTTATTACTTCAACCTAGAGAGCAA 1040
|||| ||| ||||||||| || ||||||||||| |||||||||||||||| ||||||||
Sbjct 1240 GTTGTCACAGTACTGTCTAATATACGCATTTTACATTTATTACTTCAACCTTGAGAGCAA 1299
Query 1041 GAGTCTCACAAGAGTTCAAGTACAAGGTCTTAAAATGTTTAAGCGTACGAGAGTTTACAC 1100
||||||||||||||||||| |||||| | || ||||||| || |||||||||||||||||
Sbjct 1300 GAGTCTCACAAGAGTTCAAATACAAGATGTTGAAATGTTCAAACGTACGAGAGTTTACAC 1359
Query 1101 CTCTCTAGACTATGTTGAGAATTTGAAACTTATG 1134
|||||||| ||||||||||||||| |||||||||
Sbjct 1360 CTCTCTAGGCTATGTTGAGAATTTTAAACTTATG 1393
> AT1G43781.1 | Symbols: | Pseudogene of AT1G53790; F-box family
protein | chr1:16568967-16575486 FORWARD LENGTH=1122
Length=1122
Score = 928 bits (502), Expect = 0.0
Identities = 936/1137 (82%), Gaps = 63/1137 (6%)
Strand=Plus/Plus
Query 37 ATCCCAATCGATGTCCTCATGGATATATTTTCGAGAGTTCCTGCAAAGTCTATAGCTATG 96
|||| ||| ||| ||||||||||||||||||| ||||||| || | | ||||||| | |
Sbjct 7 ATCCAAATTGATCTCCTCATGGATATATTTTCTCGAGTTCC-GCGACGACTATAGCAAGG 65
Query 97 TTTCGTTGCGTATCGAAATTCT-GGGATTCAATACTTTGCCATCCTGATTTCACAGAGTT 155
|||| ||| ||||| ||||| | |||| || |||||||||| || ||||| || |||||
Sbjct 66 TTTCCTTGTGTATCTAAATTATGGGGA-TCCATACTTTGCCGTCAAGATTTTACTGAGTT 124
Query 156 G-TATATGAATACGTCTTCGATTCG-TCAAC-CTCTGCTCTTTTTCACCTTGGAA---GA 209
| | | |||||| ||||| || ||| || || | |||||||| || ||||| || ||
Sbjct 125 GTTCT-TGAATATGTCTTTGACTCGTTC-ACGC-CTGCTCTTATTAACCTTCCAAGCTGA 181
Query 210 TAATGGCAAGT-TGTTCTTCTTCTCTTCACCTCACCCTCAGAATCCTCCAGATGAGAACA 268
||||| || | |||||||||||||||| || |||||||| ||||||||||||||
Sbjct 182 AAATGGGAA-TAAATTCTTCTTCTCTTCACATCTGCCTCAGAA---TCCAGATGAGAACA 237
Query 269 CATCTC-TTGTACCCA--C-CC-GTTATCATGTTCACCATAACCATTCTCCTACAGATTT 323
|||||| ||||||||| | || ||||||||||| ||||||| ||||||||| ||| ||
Sbjct 238 CATCTCTTTGTACCCACCCACCTGTTATCATGTTTACCATAAGAATTCTCCTAGAGAGTT 297
Query 324 TTCATCTGAAGTTAGTT-TTCCTCTTCGTGGATTC-GTCTGTAGTCGAGATAAGGGAAGT 381
|||||||||| || ||| | |||||||||||| || | ||| | |||||||||||||||
Sbjct 298 TTCATCTGAA-TTGGTTCTCCCTCTTCGTGGACTCAAT-TGTTGCCGAGATAAGGGAAGT 355
Query 382 CTAGATACTATGGTTATTTGCAACCCTG-TCACAGGAGAGTTTGTATCCTTACCTAAGGT 440
||||||||||| |||||| ||||| | |||| ||||||| | |||||||||| || |
Sbjct 356 CTAGATACTATCATTATTTATAACCC-GATCACGGGAGAGTCTCTATCCTTACCCAAACT 414
Query 441 GGAGTTGAAGAG-TGTTAATACTGAGAC-AAGACCTTATTTAGGGTATGATCCGATCGAC 498
||| |||||||| | || ||| || ||| ||| ||||||||||| ||||||||||| ||
Sbjct 415 GGAATTGAAGAGAT-TTCATATTGTGACAAAG-CCTTATTTAGGATATGATCCGATTGAG 472
Query 499 AAACAGTTAAAAGTATTGTGCATCAAG-TTCGATGATATCCCAAATACGTG-TGATGAGC 556
||||||||||||||||||||||||||| || | ||| ||||| | ||| || |||||| |
Sbjct 473 AAACAGTTAAAAGTATTGTGCATCAAGTTTAG-TGAAATCCCGAGTAC-TGTTGATGATC 530
Query 557 ATCAAGTTTTGACATTGGAGAATGGAAAACATTTATGGAGAACAATCCAATGCAAACCCC 616
||||||| ||||||||| |||||||||||||||||||||||||||| |||| ||||||||
Sbjct 531 ATCAAGTGTTGACATTGAAGAATGGAAAACATTTATGGAGAACAATTCAATACAAACCCC 590
Query 617 ATTATCCTAAATCTGATGGAATTTGCATAGATGGTACTT-TGTATTATACAGC-AGGGTT 674
|||||||||||| | ||||||| ||| |||||||| || ||||||||||||| ||| |
Sbjct 591 ATTATCCTAAATGTAATGGAATATGCTTAGATGGT-TTTCTGTATTATACAGCTCGGG-T 648
Query 675 CGATATGCGGATAAGCGTTTCTATGATAGTGTGCTTTGATGTTAGGTCTGAGAAGTTTAG 734
||||| | |||| | | ||| | ||||| ||||| |||||| |||||||||||||||
Sbjct 649 CGATAGGTGGATGTGGGATTCCAAAATAGTTTGCTTCAATGTTAAGTCTGAGAAGTTTAG 708
Query 735 CTTTATCAACATAGATGAATGCATGTTGATGACTGC-TTCTTGTACTTTGATCAACTACA 793
||||| ||||||||| |||||||||||||||| | |||||||||||||||||||||||
Sbjct 709 GTTTATTGACATAGATGGATGCATGTTGATGACT-CATTCTTGTACTTTGATCAACTACA 767
Query 794 AGGGTAAACTAGGTGCACTTCAGTTTTCATTTTTGCCTCCAAAACGTCTTGAGTTCTGGG 853
|||||||| ||| ||||||||||||| |||||||| || || || |||||||| |||
Sbjct 768 AGGGTAAATTAGATGCACTTCAGTTTACATTTTTGGGTCGAAGACAACTTGAGTTTTGGA 827
Query 854 TTCTACAAGATGCTCAAAAATATATATGGTCCAAAGATATCTACACATT---GCC-T--C 907
||||| |||||||| | |||| ||||||||||||||||||||| | ||| | | |
Sbjct 828 TTCTAGAAGATGCTGAGAAATGTATATGGTCCAAAGATATCTATATATTCTAGATATTGC 887
Query 908 CTT-TT--TGGAACAACGTAGTAGTT-AAGCGTACCGAGTTAGTCATTGTTGGAATGACT 963
||| || ||| | ||| | ||||| || |||||||||| |||||||||||||||||
Sbjct 888 CTTCTTGGTGGGATAAC--A-TAGTTCAAAA-TACCGAGTTATTCATTGTTGGAATGACT 943
Query 964 CCTGGAGGTGAAGTTGTGTTGACACCGTACTGTCTGGTA---GA-CGCATTTTACGTTTA 1019
| ||||||||||||||||| ||||||||||||| ||| || | ||| |||| || |
Sbjct 944 GGTAGAGGTGAAGTTGTGTTGTCACCGTACTGTCTAGTACTAGAAC-CATGTTACATTGA 1002
Query 1020 TTACTTCAACCTAGAGAGCAAGAGTCTCACAAGAGTTCAAGTACAAGGTCTTAAAATG-T 1078
||| |||||||| ||||| | |||| |||||||||||||| ||||||||||| || || |
Sbjct 1003 TTAATTCAACCTCGAGAGGAGGAGTTTCACAAGAGTTCAAATACAAGGTCTTGAAGTGCT 1062
Query 1079 T-TAAGCGTACGAGAGTTTACACCTCTCTAGACTATGTTGAGAATTTGAAACTTATG 1134
| |||| |||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1063 TATAAGGGTACGAGAGTTTACACTTCTCTAGACTATGCTGAGAATTTGAAACTTATG 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72338985345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5