BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg336838 Length=690 Score E Sequences producing significant alignments: (Bits) Value AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 466 1e-130 AT3G33528.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 444 6e-124 AT3G43880.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 355 3e-97 AT3G29790.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 327 6e-89 > AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G33528.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:4358652-4360099 REVERSE LENGTH=768 Length=768 Score = 466 bits (252), Expect = 1e-130 Identities = 303/326 (93%), Gaps = 9/326 (3%) Strand=Plus/Plus Query 280 GAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTATGTCTATGAGTCACC 338 ||||||||||||||||||||||||||| || |||| |||||||| ||||||||||||||| Sbjct 445 GAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTGTGTCTATGAGTCACC 503 Query 339 GATGTTGGATACAAGTGATGGTCTTGA------GTTTCTTGGAGAAAGTAAAGGTACAAA 392 |||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 504 GATGATGGATACAAGTGATGGTCTTGAGTTTGCGTTTCTTGGAGAAAGTAAAGGTAGAAA 563 Query 393 GGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGAGTTTTC 452 |||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||| Sbjct 564 GGAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTCATTCGCAGATTGAGTTTTC 623 Query 453 AGAAGATATAATGAATCTCGTCGTTGAGGATAGTGAGATAGATGAAGACTGCAGTATTTG 512 |||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||| Sbjct 624 AGAAGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATGAAGACAACAGTCTTTG 683 Query 513 GGGAAAACCTAAGAGAAAAGGTAGCAGTATTTTTCGAAAACCTAAGAGAATGGAAGAGAC 572 |||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||| Sbjct 684 GGGAAAACCTAAGAGAAAAGGTAGCAAT-TTTTTCGAAAACCTAAGAGAAAGGAAGAGAC 742 Query 573 TACAACAAGCTATGAAGCTGAGCTAA 598 |||||||| ||||||||||||||||| Sbjct 743 TACAACAACCTATGAAGCTGAGCTAA 768 > AT3G33528.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G07526.3); Has 57 Blast hits to 57 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:14082795-14084346 REVERSE LENGTH=765 Length=765 Score = 444 bits (240), Expect = 6e-124 Identities = 312/346 (90%), Gaps = 8/346 (2%) Strand=Plus/Plus Query 280 GAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTATGTCTATGAGTCACC 338 ||||||||||||||||||||||||||| || |||| |||||||||| ||||||||||||| Sbjct 418 GAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTATATCTATGAGTCACC 476 Query 339 GATGTTGGATACAAGTGATGGTCTT--G--AG--TTTCTTGGAGAAAGTAAAGGTACAAA 392 |||| |||||||||||||||||||| | | |||||||||||||||||| ||| ||| Sbjct 477 GATGATGGATACAAGTGATGGTCTTGGGTTTGCTTTTCTTGGAGAAAGTAAAAGTATAAA 536 Query 393 GGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGAGTTTTC 452 |||||||||||||||||||||||| ||||||||||||||||| || || |||||||||| Sbjct 537 GGAAATGGAATTAGTCTCTTCTCACGCTAAAGATATGTCTCAGTCCCAAATTGAGTTTTC 596 Query 453 AGAAGATATAATGAATCTCGTCGTTGAGGATAGTGAGATAGATGAAGACTGCAGTATTTG 512 ||||||||| |||||||||||||||||||| |||||||||||||||||| |||| |||| Sbjct 597 AGAAGATATTATGAATCTCGTCGTTGAGGACAGTGAGATAGATGAAGACAACAGTCTTTG 656 Query 513 GGGAAAACCTAAGAGAAAAGGTAGCAGTATTTTTCGAAAACCTAAGAGAATGGAAGAGAC 572 |||||||||||||||||||||||||| | |||| |||||||||||||||| ||| ||||| Sbjct 657 GGGAAAACCTAAGAGAAAAGGTAGCAATGTTTTCCGAAAACCTAAGAGAAAGGATGAGAC 716 Query 573 TACAACAAGCTATGAAGCTGAGCTAACTTCCTTGAGGAATCGAGTC 618 |||||||| ||||||||||||||||| || ||||| ||| |||||| Sbjct 717 TACAACAACCTATGAAGCTGAGCTAAATTACTTGAAGAACCGAGTC 762 > AT3G43880.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G07526.3); Has 32 Blast hits to 32 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15738173-15738616 REVERSE LENGTH=264 Length=264 Score = 355 bits (192), Expect = 3e-97 Identities = 243/266 (91%), Gaps = 9/266 (3%) Strand=Plus/Plus Query 340 ATGTTGGATACAAGTGATGGTCTTGA----G--TTTCTTGGAGAAAGTAAAGGTACAAAG 393 ||| |||||||||| |||||||||| | ||||||||||||| ||||||||||||| Sbjct 1 ATGATGGATACAAGCAATGGTCTTGAGTTTGCTTTTCTTGGAGAAATTAAAGGTACAAAG 60 Query 394 GAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGAGTTTTCA 453 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||| Sbjct 61 GAAATGGAATTAGTCTCTTCTGAGGCTAAAGATATGTCTCAGTCGCAAGTTGAGTTTTCA 120 Query 454 GAAGATATAATGAATCTCGTCGTTGAGGATAGTGAGATAGATGAAGACTGCAGTATTTGG 513 |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 121 GAAGATATTATGAATCTCGTCGTTGAAGAAAGTGAGATAGATGAAGACTGCAGTATTTGG 180 Query 514 GGAAAACCTAAGAGAAAAGGTAGCAGTATTTT-TCGAAAACCTAAGAGAATGGAAGAGAC 572 ||||||||||||||||||||||| |||||||| | |||||| ||| |||| ||||||||| Sbjct 181 GGAAAACCTAAGAGAAAAGGTAG-AGTATTTTCT-GAAAACATAAAAGAAAGGAAGAGAC 238 Query 573 TACAACAAGCTATGAAGCTGAGCTAA 598 |||||||| ||||||||||||||||| Sbjct 239 TACAACAACCTATGAAGCTGAGCTAA 264 > AT3G29790.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G33528.1); Has 40 Blast hits to 40 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:11693095-11693622 REVERSE LENGTH=435 Length=435 Score = 327 bits (177), Expect = 6e-89 Identities = 220/240 (92%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 347 ATACAAGTGATGGTCTTGA----G--TTTCTTGGAGAAAGTAAAGGTACAAAGGAAATGG 400 ||||||| ||||||||||| | ||||||||||||||||| ||||||||||||||| Sbjct 8 ATACAAGCGATGGTCTTGAGTTTGCTTTTCTTGGAGAAAGTAATGGTACAAAGGAAATGA 67 Query 401 AATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGAGTTTTCAGAAGATA 460 |||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 68 AATTAGTCTCTTCTGATGCTAAAGATATGTCTCAGTCGCAAGTTGAGTTTTCAGAAGATA 127 Query 461 TAATGAATCTCGTCGTTGAGGATAGTGAGATAGATGAAGACTGCAGTATTTGGGGAAAAC 520 | |||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| Sbjct 128 TTGTGAATCTCGTCGTTGAAGACAGTGAGATAGATGAAGATTGCAGTATTTGGGGAAAAC 187 Query 521 CTAAGAGAAAAGGTAGCAGTATTTTTCGAAAACCTAAGAGAATGGAAGAGACTACAACAA 580 ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 188 CTAAGAGAAAAGGTAGCAGTATTTTCCGAAAACCTAAGAGAAAGGAAGAGACTACAACAA 247 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33405707755 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5