BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336838
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 466 1e-130
AT3G33528.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 444 6e-124
AT3G43880.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 355 3e-97
AT3G29790.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 327 6e-89
> AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G33528.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:4358652-4360099 REVERSE LENGTH=768
Length=768
Score = 466 bits (252), Expect = 1e-130
Identities = 303/326 (93%), Gaps = 9/326 (3%)
Strand=Plus/Plus
Query 280 GAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTATGTCTATGAGTCACC 338
||||||||||||||||||||||||||| || |||| |||||||| |||||||||||||||
Sbjct 445 GAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTGTGTCTATGAGTCACC 503
Query 339 GATGTTGGATACAAGTGATGGTCTTGA------GTTTCTTGGAGAAAGTAAAGGTACAAA 392
|||| |||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 504 GATGATGGATACAAGTGATGGTCTTGAGTTTGCGTTTCTTGGAGAAAGTAAAGGTAGAAA 563
Query 393 GGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGAGTTTTC 452
|||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||
Sbjct 564 GGAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTCATTCGCAGATTGAGTTTTC 623
Query 453 AGAAGATATAATGAATCTCGTCGTTGAGGATAGTGAGATAGATGAAGACTGCAGTATTTG 512
|||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||
Sbjct 624 AGAAGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATGAAGACAACAGTCTTTG 683
Query 513 GGGAAAACCTAAGAGAAAAGGTAGCAGTATTTTTCGAAAACCTAAGAGAATGGAAGAGAC 572
|||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct 684 GGGAAAACCTAAGAGAAAAGGTAGCAAT-TTTTTCGAAAACCTAAGAGAAAGGAAGAGAC 742
Query 573 TACAACAAGCTATGAAGCTGAGCTAA 598
|||||||| |||||||||||||||||
Sbjct 743 TACAACAACCTATGAAGCTGAGCTAA 768
> AT3G33528.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G07526.3);
Has 57 Blast hits to 57 proteins in 2 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:14082795-14084346
REVERSE LENGTH=765
Length=765
Score = 444 bits (240), Expect = 6e-124
Identities = 312/346 (90%), Gaps = 8/346 (2%)
Strand=Plus/Plus
Query 280 GAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTATGTCTATGAGTCACC 338
||||||||||||||||||||||||||| || |||| |||||||||| |||||||||||||
Sbjct 418 GAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTATATCTATGAGTCACC 476
Query 339 GATGTTGGATACAAGTGATGGTCTT--G--AG--TTTCTTGGAGAAAGTAAAGGTACAAA 392
|||| |||||||||||||||||||| | | |||||||||||||||||| ||| |||
Sbjct 477 GATGATGGATACAAGTGATGGTCTTGGGTTTGCTTTTCTTGGAGAAAGTAAAAGTATAAA 536
Query 393 GGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGAGTTTTC 452
|||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||
Sbjct 537 GGAAATGGAATTAGTCTCTTCTCACGCTAAAGATATGTCTCAGTCCCAAATTGAGTTTTC 596
Query 453 AGAAGATATAATGAATCTCGTCGTTGAGGATAGTGAGATAGATGAAGACTGCAGTATTTG 512
||||||||| |||||||||||||||||||| |||||||||||||||||| |||| ||||
Sbjct 597 AGAAGATATTATGAATCTCGTCGTTGAGGACAGTGAGATAGATGAAGACAACAGTCTTTG 656
Query 513 GGGAAAACCTAAGAGAAAAGGTAGCAGTATTTTTCGAAAACCTAAGAGAATGGAAGAGAC 572
|||||||||||||||||||||||||| | |||| |||||||||||||||| ||| |||||
Sbjct 657 GGGAAAACCTAAGAGAAAAGGTAGCAATGTTTTCCGAAAACCTAAGAGAAAGGATGAGAC 716
Query 573 TACAACAAGCTATGAAGCTGAGCTAACTTCCTTGAGGAATCGAGTC 618
|||||||| ||||||||||||||||| || ||||| ||| ||||||
Sbjct 717 TACAACAACCTATGAAGCTGAGCTAAATTACTTGAAGAACCGAGTC 762
> AT3G43880.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G07526.3);
Has 32 Blast hits to 32 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15738173-15738616
REVERSE LENGTH=264
Length=264
Score = 355 bits (192), Expect = 3e-97
Identities = 243/266 (91%), Gaps = 9/266 (3%)
Strand=Plus/Plus
Query 340 ATGTTGGATACAAGTGATGGTCTTGA----G--TTTCTTGGAGAAAGTAAAGGTACAAAG 393
||| |||||||||| |||||||||| | ||||||||||||| |||||||||||||
Sbjct 1 ATGATGGATACAAGCAATGGTCTTGAGTTTGCTTTTCTTGGAGAAATTAAAGGTACAAAG 60
Query 394 GAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGAGTTTTCA 453
||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct 61 GAAATGGAATTAGTCTCTTCTGAGGCTAAAGATATGTCTCAGTCGCAAGTTGAGTTTTCA 120
Query 454 GAAGATATAATGAATCTCGTCGTTGAGGATAGTGAGATAGATGAAGACTGCAGTATTTGG 513
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 121 GAAGATATTATGAATCTCGTCGTTGAAGAAAGTGAGATAGATGAAGACTGCAGTATTTGG 180
Query 514 GGAAAACCTAAGAGAAAAGGTAGCAGTATTTT-TCGAAAACCTAAGAGAATGGAAGAGAC 572
||||||||||||||||||||||| |||||||| | |||||| ||| |||| |||||||||
Sbjct 181 GGAAAACCTAAGAGAAAAGGTAG-AGTATTTTCT-GAAAACATAAAAGAAAGGAAGAGAC 238
Query 573 TACAACAAGCTATGAAGCTGAGCTAA 598
|||||||| |||||||||||||||||
Sbjct 239 TACAACAACCTATGAAGCTGAGCTAA 264
> AT3G29790.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G33528.1);
Has 40 Blast hits to 40 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:11693095-11693622
REVERSE LENGTH=435
Length=435
Score = 327 bits (177), Expect = 6e-89
Identities = 220/240 (92%), Gaps = 6/240 (3%)
Strand=Plus/Plus
Query 347 ATACAAGTGATGGTCTTGA----G--TTTCTTGGAGAAAGTAAAGGTACAAAGGAAATGG 400
||||||| ||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 8 ATACAAGCGATGGTCTTGAGTTTGCTTTTCTTGGAGAAAGTAATGGTACAAAGGAAATGA 67
Query 401 AATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGAGTTTTCAGAAGATA 460
|||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 68 AATTAGTCTCTTCTGATGCTAAAGATATGTCTCAGTCGCAAGTTGAGTTTTCAGAAGATA 127
Query 461 TAATGAATCTCGTCGTTGAGGATAGTGAGATAGATGAAGACTGCAGTATTTGGGGAAAAC 520
| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 128 TTGTGAATCTCGTCGTTGAAGACAGTGAGATAGATGAAGATTGCAGTATTTGGGGAAAAC 187
Query 521 CTAAGAGAAAAGGTAGCAGTATTTTTCGAAAACCTAAGAGAATGGAAGAGACTACAACAA 580
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 188 CTAAGAGAAAAGGTAGCAGTATTTTCCGAAAACCTAAGAGAAAGGAAGAGACTACAACAA 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5