BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336931
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47730.1 | Symbols: | F-box and associated interaction doma... 638 0.0
> AT1G47730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:17563931-17565106 REVERSE LENGTH=1176
Length=1176
Score = 638 bits (345), Expect = 0.0
Identities = 656/802 (82%), Gaps = 37/802 (5%)
Strand=Plus/Plus
Query 352 AAAGCAGGAAACCCTTTAGTTTGGAACCCTACTATGAGAAAGCTCTTACCTTTACCTTTA 411
||||||| || |||| || ||||||||||||||||||||||| || | |||||||
Sbjct 397 AAAGCAGCAACCCCTATAATTTGGAACCCTACTATGAGAAAG---TT--C-AAACCTTTA 450
Query 412 CGCAAACCCGA-GAAGAGCTGGAAGAGTATGAACTTCTTTTTAGGTTATGAGCCAGTCGA 470
||||| | || | |||| ||||||| ||| || ||| |||||| || || ||||| ||
Sbjct 451 CGCAAGCTGGATG-AGAGGTGGAAGAATATAAAAGTCTCTTTAGGGTACGATCCAGTTGA 509
Query 471 AGGTAAACACAAAGTAGTGTGCATGCCTTGTGGTAGA-GCTTATTATGATGAGTGTCAGG 529
|||||||||||||||||||||||||| | ||||| | |||| || | ||||||||| ||
Sbjct 510 TGGTAAACACAAAGTAGTGTGCATGCCGTATGGTA-ATGCTT-TT-T-ATGAGTGTCGGG 565
Query 530 TTTTAACATTGGGATCAGATCAAGAATCATGGAGAACGGTCAAAACCAACCACAAGGGTG 589
| |||||||||||||||||||||| | ||||||||| || |||||||||||||| |
Sbjct 566 TGTTAACATTGGGATCAGATCAAG-A--ATGGAGAACTGTTAAAACCAACCACAAAAATA 622
Query 590 GCCCTGTCAC-TGTCCATCGAACAATTTGCTATGGACAATGCAGATGCATCAATGGTGTT 648
||||| | || | ||||| | | |||| ||| |||||| |||||||||||| ||||||
Sbjct 623 GCCCTTTTACAT-TCCATGGTGGAGTTTGTTATAGACAATCCAGATGCATCAACGGTGTT 681
Query 649 ATATATTACCTAGCCGGTATTAATTTTGTTCTGGTTATAATGAGTTTCGATGTAAGATCT 708
|||||||| | ||| | || ||||| || || ||| ||| ||||||||||||||||||||
Sbjct 682 ATATATTATCGAGCTGATACTAATTCTGGTCGGGTGATATTGAGTTTCGATGTAAGATCT 741
Query 709 GAAAAGTTCGATGTGATAGAATTACCATGGGATAATAAGCTTTGGCCTAC-GATGTTGAT 767
||| |||||||||||||||||||||||||||| | || ||||| || |||| ||||
Sbjct 742 GAACGGTTCGATGTGATAGAATTACCATGGGATGAGAAT-TTTGGGCTTGTGATGATGAT 800
Query 768 ATCTTATGAAGGAAGGTTAGTTTGTCTTAGTTCCAATG--G-GAACAATAGTCGTTCAAT 824
|||||| |||||||||||| ||||||| ||| |||| | ||| ||||||||||||||
Sbjct 801 GTCTTATAAAGGAAGGTTAGCTTGTCTTGGTTTCAATCATGAGAAGAATAGTCGTTCAAT 860
Query 825 GTGGGTTTTAGAGGATGCAGAGAAACAG-GAATGGTCGAGTTATAACCT-TTTACCTCTT 882
||||||||| ||| ||| |||| | | | ||||||||| || ||| ||| ||||||| ||
Sbjct 861 GTGGGTTTTGGAGAATGTAGAGCAGC-GCGAATGGTCGTGTCATA-CCTATTTACCTATT 918
Query 883 TCTCACTATGATCCGGGTTCGGAAGACCT-TTTCAAACTAATAGGTATTACTATTGATGG 941
||||| ||||| ||||||| ||| || || |||||| |||| |||||| |||| ||||||
Sbjct 919 TCTCATTATGAGCCGGGTTTGGA-GAACTATTTCAATCTAACAGGTATCACTAATGATGG 977
Query 942 TGAACTGATTTATGTACCAAACGCGGTGTTCGAATC-TTTTGATGTCATATATATTGATC 1000
|||||||||||| ||||||||| | ||| ||||| | |||| |||| |||||| |||||
Sbjct 978 TGAACTGATTTACGTACCAAACACTGTGCTCGAA-CGTTTTCATGTTATATATTTTGATG 1036
Query 1001 CAA-AGAGAAAGACGTTTAGAAGAGT-AGGATATAGAGGAATTGGAGATAAAGATTTTAG 1058
||| | ||| |||||||||||||||| | ||| | |||| ||| |||||||| |||| |
Sbjct 1037 CAATA-AGAGAGACGTTTAGAAGAGTCAT-ATACAAAGGAGTTGCAGATAAAGGTTTTCG 1094
Query 1059 ACAACGCAATGAACTTGGAGAAAAACCTCTGCGTGGGCTTCAATTTTATCCC-AATCACA 1117
|| |||||||| ||||| ||| |||||| | ||| | || || |||| |||| |||||||
Sbjct 1095 ACTACGCAATGGACTTGAAGACAAACCTATACGTAGACTCCACTTTT-TCCCCAATCACA 1153
Query 1118 TTGAAACTCTCATGTCTTTGTA 1139
||||||||||||||||||||||
Sbjct 1154 TTGAAACTCTCATGTCTTTGTA 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5