BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336962
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48420.1 | Symbols: D-CDES, ATACD1, ACD1 | D-cysteine desulf... 1879 0.0
> AT1G48420.1 | Symbols: D-CDES, ATACD1, ACD1 | D-cysteine desulfhydrase
| chr1:17896597-17898804 REVERSE LENGTH=1377
Length=1377
Score = 1879 bits (1017), Expect = 0.0
Identities = 1136/1194 (95%), Gaps = 6/1194 (1%)
Strand=Plus/Plus
Query 19 TTGACACTCTCAAGAGT-AAGACTTGAGCTTGGGAGAAGAAGAATGTCTGCAACATCCGT 77
||||||||||||||||| ||| || ||||||| ||||||||| |||||||||||||||||
Sbjct 17 TTGACACTCTCAAGAGTAAAG-CTCGAGCTTGCGAGAAGAAGCATGTCTGCAACATCCGT 75
Query 78 ACCTTCAATGGCGGATTTTCTCACaaaaaaaCCTTACACTCCTCCTTCTTGGGCTTCTCA 137
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 76 ACCTTCAATGGCGGATTTTCTCACCAAAAAACCTTACTCTCCTCCTTCTTGGGCTTCTCA 135
Query 138 TCTTCTTCCGATTCCTTCCCACACTTTCTCTCTCGCTCACCTTCCTACGCCGATCCATCG 197
||||| |||| ||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 136 TCTTCGTCCGCTTCCTTCTCACACTTTCTCCCTCGCTCACCTTCCTACTCCGATCCATCG 195
Query 198 ATGGAATCTTCCTGGTCTTCCTAATGGCACTGAACTCTGGATCAAGCGAGATGATTTCAC 257
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 196 ATGGAATCTTCCTGGTCTTCCTAATGGCACAGAACTCTGGATCAAGCGAGATGATTTCAC 255
Query 258 CGGAATGGAATTGAGTGGAAACAAAGTCCGAAAACTCGAATTCTTAATGGCGGAAGCTGT 317
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 256 CGGAATGGAATTGAGTGGAAACAAAGTACGAAAACTCGAATTCTTAATGGCGGAAGCTGT 315
Query 318 TGATCAAAACGCCGACACCGTTATCACCATCGGCGGTATTCAGAGCAATCATTGTCGTGC 377
||||||| |||| || || || ||||| ||||||||||||||||||||||||||||||||
Sbjct 316 TGATCAACACGCTGATACTGTAATCACTATCGGCGGTATTCAGAGCAATCATTGTCGTGC 375
Query 378 TACAGCCACCGCATCAAACTATCTCAATCTCAATTCTCATCTTATTCTTCGTACTTCCAA 437
||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 376 TACAGCCACTGCATCTAACTATCTTAATCTCAATTCTCATCTTATTCTCCGTACTTCCAA 435
Query 438 GCTTCTTGCTGATGAAGATCCTGGATTGGTTGGGAATCTCCTTGTCGAGCGTCTCGTTGG 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 GCTTCTTGCTGATGAAGATCCTGGATTGGTTGGGAATCTCCTTGTCGAGCGTCTCGTTGG 495
Query 498 AGCTAATGTTCATCTCATCTCTAAGGAAGAGTATTCTTCCATTGGGAGTGAGGCTCTTAC 557
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 496 AGCTAATGTTCATCTAATCTCTAAAGAAGAGTATTCTTCCATTGGGAGTGAGGCTCTTAC 555
Query 558 TAATGCTCTGAAAGAGAAACTGGAAAAGGAAGGGAAA-AAACCGTATGTTATTCCGGTCG 616
||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||| ||||
Sbjct 556 TAATGCTCTGAAAGAGAAACTGGAAAAAGAA-GGAAAGAAACCCTATGTTATTCCAGTCG 614
Query 617 GTGGATCAAACTCTTTGGGAACTTGGGGTTATATCGAAGCAGCAAGGGAAATTGAGGAGC 676
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 615 GTGGATCGAACTCTTTGGGAACTTGGGGTTATATAGAAGCAGCAAGGGAAATTGAGGAGC 674
Query 677 AGCTGAA-AAGTAGACCTGATGGTCTGAAATTTGATGATATTGTGGTAGCATGTGGCAGT 735
||||||| | |||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 675 AGCTGAATTA-TAGACCCGATGACCTGAAATTTGATGATATTGTGGTAGCATGTGGCAGT 733
Query 736 GGTGGTACAATTGCTGGTATTTCATTGGGGTCTTGGTTGGGAGCTCTAAAAGCCAAGGTT 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 GGTGGTACAATTGCTGGTATTTCATTGGGGTCTTGGTTGGGAGCTCTAAAAGCCAAGGTT 793
Query 796 CATGCTTTCTCGGTTTGCGATGATCCTGATTACTTCTATGACTTTGTCCAAGGGCTTTTG 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 794 CATGCTTTCTCGGTTTGCGATGATCCTGATTACTTCTATGACTTTGTCCAAGGGCTTCTG 853
Query 856 GATGGACTTCAAGCTGGTGTTAACTCTCGTGATATTGTTAGCATCCACAATGCCAAAGGA 915
||||||||||| ||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 854 GATGGACTTCACGCTGGTGTTAACTCTCGTGATATCGTCAACATCCACAATGCCAAAGGA 913
Query 916 AATGGATATGCCATGAACACTTCAGAGGAGCTTAAGTTTGTAAAGGAAGTAGCAAGTTCA 975
|| ||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||
Sbjct 914 AAAGGATATGCCATGAACACGTCAGAGGAGCTTGAGTTTGTAAAGAAAGTAGCAAGTTCA 973
Query 976 ACTGGTGTTATTCTTGATCCTGTTTACAGTGGGAAAGCTGTGTATGGTTTGATAAATGAG 1035
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 974 ACTGGTGTTATTCTTGATCCGGTTTACAGTGGGAAAGCTGCGTATGGTTTGATAAATGAG 1033
Query 1036 ATCACCAAAGATCCCAAAAATTGGGAGGGAAGGAAGATATTGTTCATACACACCGGTGGG 1095
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1034 ATCACCAAAGATCCCAAATGTTGGGAGGGAAGGAAGATATTGTTCATACACACTGGTGGG 1093
Query 1096 CTTCTTGGGTTGTATGATAAGGTTGATCAAATGGCTTCTCTGATGGGTAGTTGGTGCCGG 1155
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||
Sbjct 1094 CTTCTTGGGTTGTATGATAAGGTTGATCAAATGGCATCTCTGATGGGTAATTGGTCCCGG 1153
Query 1156 ATGGATGTTTCAGAATCCGTGCCAAGAAAAGATGGTGTTGGAAAAATGTTCTAG 1209
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1154 ATGGATGTTTCAGAATCCGTTCCAAGAAAAGATGGTGTTGGGAAAATGTTCTAG 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59387244735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5