BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336977
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48570.1 | Symbols: | zinc finger (Ran-binding) family prot... 1273 0.0
> AT1G48570.1 | Symbols: | zinc finger (Ran-binding) family protein
| chr1:17955278-17957719 REVERSE LENGTH=1603
Length=1603
Score = 1273 bits (689), Expect = 0.0
Identities = 799/851 (94%), Gaps = 11/851 (1%)
Strand=Plus/Plus
Query 1 ATGTCATCTTCCAGAATATTCCTAGTCGGAAATACCATTTTCCGTCCTCACAAACCTTCC 60
||||||||||||||||||||||||||||| ||| |||| ||||| ||||||||||| |||
Sbjct 59 ATGTCATCTTCCAGAATATTCCTAGTCGGTAATTCCATATTCCGACCTCACAAACCATCC 118
Query 61 TTTCCTCTCTCTTTCAATCGCTTCCCCTCTGTATCTCTCCGCTTCAGATGCTTCTCCAGT 120
|||||||||||||||||||| || || |||||||||||||||||| ||||||||||||||
Sbjct 119 TTTCCTCTCTCTTTCAATCGTTTTCCATCTGTATCTCTCCGCTTCCGATGCTTCTCCAGT 178
Query 121 GACGCCGCCACCGCAGTAACAACAACCACCGTGGATTCGGATTTGCCGTCTCTTTCTCCT 180
||||||||| ||||||| | ||||||||||||||||||||| ||||||||| |||||
Sbjct 179 GACGCCGCCGCCGCAGT---AGCAACCACCGTGGATTCGGATTCGCCGTCTCTCACTCCT 235
Query 181 CATCCATGGCCAGAGTGGATAACTTTCGTCGATCGTTTAAAGACGAAAGGATATTTCACC 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 236 CATCCATGGCCAGAGTGGATAACTTTCGTCGATCGCTTAAAGACGAAAGGATATTTCACC 295
Query 241 AAAGACACCGAAGATGATACGGTTTATCAGGAAATGAATCTAGTTAAAGATGCTTGTCTC 300
|||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||
Sbjct 296 AAAGACACCGAAGATGATACTGTTTATCAGGAAATGATTCTCGTTAAAGATGCTTGTCTC 355
Query 301 AGCTTCGCTCGTGATCGTTACGACGTTCTCAGGTCCTTATCATCAGGAGATGTACAAGCT 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 356 AGCTTCGCTCGTGATCGTTACGACGTTCTCAGATCCTTATCATCAGGAGATGTACAAGCT 415
Query 361 CTTGTGGAGCGTGGATGCCCTAATCTCTTCAGAAAAACTGTGAATTCATCCAAAAGGATT 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 416 CTTGTGGAGCGTGGATGCCCTAATCTCTTCAGAAAAACTGTGAATTCTTCCAAAAGGATT 475
Query 421 CGAGCTCATGTTCGA-TTAAACGAAGGAGATGTTTGTGGTTCTTGTGATCTTCGTAGCTC 479
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CGAGCTCATGTT-AAGTTAAACGAAGGAGATGTTTGTGGTTCTTGTGATCTTCGTAGCTC 534
Query 480 GTGTGATAGAGCTTATGTGATACTTAAGGATACAGAAGCTGATGCTCGAACCGTTGATGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 535 GTGTGATAGAGCTTATGTGATACTTAAGGATACAGAAGCTGATGCTCGAACTGTTGATGT 594
Query 540 TATGCGTTTACTATTGTTCAATGCGCTTGATTCGATTGTTATCTCTCGAGGTGAAATTCC 599
||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 595 TATGCGTTTACTATTGTTCAATGCGCTTGATTCTATAGTTATCTCTCGAGGTGAAGTTCC 654
Query 600 ACCTGGTAAAGAACTTGTTCATGAGTCTGCAAGAAGACTTCTTTTAGAGTTGGTTGAGTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 ACCTGGTAAAGAACTTGTTCATGAGTCTGCAAGAAGACTTCTTTTAGAGTTGGTTGAGTT 714
Query 660 CAGTGAGAAGCCTTTAAGCCCTGCCTTACCAAAACCTTCTTCTAAGGAATCTT-T--GCC 716
|||||||||||||||| |||||| ||||||||||||||||| |||||||||| | |||
Sbjct 715 TAGTGAGAAGCCTTTAATCCCTGCTTTACCAAAACCTTCTTCAAAGGAATCTTCTTTGCC 774
Query 717 TCCCAAGGAGAGGGTTTTTAAATTGAGGAATGATGATGAGCCTTCTCAGCGTGTGGCTTT 776
| | || ||||| | |||||| | |||||||||||| | ||||||||||||||||||||
Sbjct 775 TTCGAAAGAGAGAGCTTTTAAGTCGAGGAATGATGA-G--CCTTCTCAGCGTGTGGCTTT 831
Query 777 TAAATCGAGGAATGATGAGCCTTCTCAACGTGTGGCTTTTAGATCGAGGAACGATGAACC 836
|||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 832 TAAATCGAGGAATGATGATCCTTCTCAACGTGTGGCTTTTAAATCGAGGAATGATGAGCC 891
Query 837 TTCTCAACGTG 847
|||||| ||||
Sbjct 892 TTCTCACCGTG 902
Score = 1007 bits (545), Expect = 0.0
Identities = 583/601 (97%), Gaps = 3/601 (0%)
Strand=Plus/Plus
Query 732 TTTTAAATTGAGGAATGATGATGAGCCTTCTCAGCGTGTGGCTTTTAAATCGAGGAATGA 791
|||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 829 TTTTAAATCGAGGAATGATGAT---CCTTCTCAACGTGTGGCTTTTAAATCGAGGAATGA 885
Query 792 TGAGCCTTCTCAACGTGTGGCTTTTAGATCGAGGAACGATGAACCTTCTCAACGTGATCG 851
|||||||||||| ||||||||||||| |||| |||||||||| ||||||||||||||||
Sbjct 886 TGAGCCTTCTCACCGTGTGGCTTTTAAATCGCGGAACGATGAGTCTTCTCAACGTGATCG 945
Query 852 ACCTCTTTACAGTGCAGATTGGGCTTGTCCCAAATGCGACTTTGTAAATTTTGCCAGAAA 911
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 946 ACCTCTTTACAGTGCAGATTGGGCTTGTCCTAAATGCGACTTTGTAAACTTTGCCAGAAA 1005
Query 912 TGAAAGATGCCGAGAGTGCAATGAAGTCGCTGACAGACGACCTGTTGCTGCTGTTGTCAA 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 TGAAAGATGCCGAGAGTGCAATGAAGTCGCTGACAGACGACCTGTTGCTGCTGTTGTCAA 1065
Query 972 GGAAGGTGACTGGCTATGTCCTGAGTGCAGTTTCTTAAACTTTACAAGAAACCAGAGCTG 1031
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1066 GGAAGGTGACTGGCTATGTCCTGAGTGTAGTTTCTTAAACTTCACAAGAAACCAGAGCTG 1125
Query 1032 TCTGAAATGCAAAGCAAAGGGACCAAAGAAAACTTCAATGGTGAATGTTGTTGAAATGAA 1091
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1126 TCTGAAATGCAAAGCAAAGGGACCAAAGAAAACTTCAATGGTGAATATTGTTGAAATGAA 1185
Query 1092 GAAAGGAGACTGGAACTGCACTGGGTGTGGATATATGAACTTTGCTAGCAACAAACAGTG 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 GAAAGGAGACTGGAACTGCACTGGGTGTGGATATATGAACTTTGCTAGCAACAAACAGTG 1245
Query 1152 TCGAGAGTGCCGAGAACAACGTCACAAGACGCTAGCTGAGCCTGGAGATTGGGAATGCCC 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 TCGAGAGTGCCGAGAACAACGTCACAAGACGCTAGCTGAGCCTGGAGATTGGGAATGCCC 1305
Query 1212 CTCATGCGACTTTGTGAACTTTAGGAGAAACGATGCTTGCAAGAAATGCGAGTGCAAACG 1271
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 CTCATGCGACTTCGTGAACTTTAGGAGAAACGATGCTTGCAAGAAATGCGAGTGCAAACG 1365
Query 1272 ACCTAGCGAAGCCAATAACGATCAGGAAGACCATACATGGAAACGACCCGCCTTAGTGTA 1331
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1366 ACCTAGCCAAGCCAATAACGATCAAGAAGACCATACATGGAAACGACCCGCCTTAGTGTA 1425
Query 1332 A 1332
|
Sbjct 1426 A 1426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65561911770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5