BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336986
Length=1944
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48640.1 | Symbols: | Transmembrane amino acid transporter ... 1626 0.0
AT1G48635.2 | Symbols: PEX3, PEX3-2 | peroxin 3 | chr1:17983733... 861 0.0
> AT1G48640.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr1:17986358-17988991 FORWARD LENGTH=1362
Length=1362
Score = 1626 bits (880), Expect = 0.0
Identities = 988/1042 (95%), Gaps = 0/1042 (0%)
Strand=Plus/Plus
Query 874 ATTGAAGAGCTTGAGAGACAGAAAGATATCGACGATTGGCTACCGATAACTTCATCGAGA 933
||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 64 ATTGACGAGCTTGAGAGACAGAAAGAGATCGATGATTGGCTTCCGATAACTTCATCGAGA 123
Query 934 AACGCGAAATGGTGGTACTCCACGTTTCACAATGTGACTGCCATGGTTGGAGCCGGCGTC 993
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 124 AACGCGAAATGGTGGTACTCCACGTTTCACAACGTGACTGCCATGGTTGGAGCTGGCGTC 183
Query 994 CTTGGTCTGCCTTACTCCATGGCCCAACTCGGATGGGGACCAGGCATAGCAGTCCTGATA 1053
|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CTTGGTCTCCCTTTCTTCATGGCCCAACTCGGATGGGGACCAGGCATAGCAGTCCTGATA 243
Query 1054 CTATCATGGATAATAACACTTTACACGTTATGGCAAATGGTGGAGATGCATGAGATGGTT 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CTATCATGGATAATAACACTTTACACGTTATGGCAAATGGTGGAGATGCATGAGATGGTT 303
Query 1114 CCTGGAAAACGCTTTGACCGTTACCATGAACTTGGCCAGTTCGCGTTTGGTGAACGTCTT 1173
|| |||||||||||||| || || ||||||||||| |||||||| ||||| |||||||||
Sbjct 304 CCCGGAAAACGCTTTGATCGCTATCATGAACTTGGTCAGTTCGCATTTGGCGAACGTCTT 363
Query 1174 GGCCTTTATATCATCGTCCCTCAGCAAATCATTGTTGAAGTTGGAGTATGCATAGTTTAT 1233
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 GGCCTTTATATTATCGTCCCTCAGCAAATCATTGTTGAAGTTGGAGTATGCATAGTTTAT 423
Query 1234 ATGGTCACCGGAGGACAGTCGTTGAAGAAGTTTCATGAACTCGCCTGTCAAGATTGCTCA 1293
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 424 ATGGTCACCGGAGGACAGTCGTTGAAGAAGTTTCACGAAATCGCCTGTCAAGATTGCTCA 483
Query 1294 CCGATTAGACTTTCTTTCTTCGTAATGATATTTGCTTCTTCTCATTTCGTTTTATCTCAT 1353
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 484 CCGATCAGACTTTCTTTCTTCATAATGATATTTGCTTCTTCTCATTTCGTTTTATCTCAT 543
Query 1354 CTCCCAAACTTCAATTCCATCTCGGGTGTCTCTCTTGTGGCCGCCGTCATGTCTCTTAGT 1413
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 544 CTCCCAAACTTCAACTCCATCTCGGGTGTCTCTCTTGTTGCGGCCGTCATGTCTCTTAGT 603
Query 1414 TATTCGACGATTGCTTGGACAGCAACAGCTGCGAAGGGCGTCCAAGAAGACGTTCAATAT 1473
|||||||| ||||| |||||||||||||| || |||||||| |||||||| |||||||||
Sbjct 604 TATTCGACAATTGCGTGGACAGCAACAGCCGCAAAGGGCGTTCAAGAAGATGTTCAATAT 663
Query 1474 GGTTACAAATCAGGCACGACAGCGTCAACGGTCTTAAGCTTCTTTACGGGACTTGGGGGC 1533
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 664 GGTTACAAATCAGGCACGACCGCGTCAACAGTCTTAAGCTTCTTTACGGGACTTGGGGGC 723
Query 1534 ATTGCGTTTGCTTATGCAGGTCACAATGTGGTGCTTGAGATCCAAGCAACGATACCTTCT 1593
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 724 ATTGCGTTTGCATATGCAGGTCACAATGTGGTGCTTGAGATCCAAGCAACGATACCCTCT 783
Query 1594 ACTCCAAGTACCCCTTCTAAAGGTCCTATGTGGAGAGGAGTCGTGGTTGCTTACGTGGTT 1653
|| ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 784 ACACCAAGTAACCCTTCTAAAGGTCCTATGTGGAGAGGAGTGGTGGTGGCTTACGTGGTT 843
Query 1654 GTAGCCTTGTGTTATTTTCCCGTCGCTTTAGTTGGATACGGTGTTTTTGGAAACGCCGTT 1713
|| |||||||||||||| ||||| ||||| ||||| || || ||||| |||||||| |||
Sbjct 844 GTGGCCTTGTGTTATTTCCCCGTTGCTTTGGTTGGCTATGGAGTTTTCGGAAACGCGGTT 903
Query 1714 TTGGATAACGTTTTGATGTCGCTCGAAACGCCCGTTTGGGCCATCGCAACCGCTAACTTG 1773
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 904 TTGGATAACGTGTTGATGTCGCTCGAAACGCCCGTTTGGGCCATTGCAACTGCTAACTTG 963
Query 1774 TTCGTCGTTATGCATGTCATTGGTAGTTACCAGATATTTGCGATGCCGGTTTTCGACATG 1833
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 964 TTCGTCGTTATGCATGTCATTGGTAGTTACCAGATATTCGCGATGCCGGTTTTCGACATG 1023
Query 1834 GTGGAGACATTTCTGGTTAAGAAACTAAATTTCAAACCCTCTACAATTCTTCGTTTCATC 1893
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1024 GTGGAGACATTTCTGGTTAAGAAACTGAATTTCAAACCCTCTACAGTTCTTCGTTTCATT 1083
Query 1894 GTACGAAATGTTTATGTTGCTT 1915
||||||||||||||||||||||
Sbjct 1084 GTACGAAATGTTTATGTTGCTT 1105
Score = 60.2 bits (32), Expect = 7e-08
Identities = 37/39 (95%), Gaps = 1/39 (3%)
Strand=Plus/Plus
Query 1906 TATGTTGCTTCCTTGCATAATGTGGCTGCTAATCTATAA 1944
||| || ||||||||||||||||||||||||||||||||
Sbjct 1189 TAT-TTTCTTCCTTGCATAATGTGGCTGCTAATCTATAA 1226
> AT1G48635.2 | Symbols: PEX3, PEX3-2 | peroxin 3 | chr1:17983733-17986116
FORWARD LENGTH=1571
Length=1571
Score = 861 bits (466), Expect = 0.0
Identities = 525/554 (95%), Gaps = 2/554 (0%)
Strand=Plus/Plus
Query 321 TGAAGAGTTAGATCTCATTGATAGAGATGATGAACAGAAGTTTTTGTCAAGTGCTGATTT 380
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 824 TGAAGAGGTAGATCTCATTGATAGAGATGATGAACAGAAGTTTTTGTCGAGTGCTGATTT 883
Query 381 TCTTGTCACCAATGCATTGCCAAGTTTGATTTCAGATATGCAGGGTGCAGTCGAGGAAGT 440
|||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 884 TCTTGTCACCAATGCAATGCCAAGTTTGATTTCAGATATGCAGGGTTCAGCCGAGGAAGT 943
Query 441 CCTTAGAGGAAAGCAGTTGAAGGATGTAATTACCACAAGAGTTCTTCAAGAAACCGTGAT 500
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 944 CCTTAAAGGAAAGCAGTTAAAGGATGTAATTACCACAAGAGTTCTTCAAGAAACCGTGAT 1003
Query 501 GCGGGTTTTAGAAGTGTTTATGAGCACTGGAAGTCCACATCACTGGGTTGATTATTTAAT 560
|| | || |||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1004 GCAGATTGTAGATGTGTTTATGAGCACTGGAAGCCCACATCACTGGGTTGATTATTTAAT 1063
Query 561 GATGCCTCAAGACACAAAGCTTTCAGGAACCACAAGCGGCTCTTCTGATGAAACAGTGTC 620
||||||||||||||||||||||||| |||||||||| | ||||||||||||| | |||||
Sbjct 1064 GATGCCTCAAGACACAAAGCTTTCAAGAACCACAAGTGACTCTTCTGATGAAGCTGTGTC 1123
Query 621 CAAGTTTCGTCAACTCATGGTTGAGACCCGAGAAGTACTCATCAACACTGAATTCACAAA 680
|||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1124 CAAGTTTCATCAACTCATGGTTGAGACTCGAGAAGTACTCATCAGCACTGAATTCACAAA 1183
Query 681 TATAGTGGAAATTTCGCTCAAGTGTTTCACGGATGCT-TTGGTAGAAGAAATGGAAACGC 739
|||||| ||||||||||||||||| |||||||||| | |||||||| |||||||||||||
Sbjct 1184 TATAGTCGAAATTTCGCTCAAGTGCTTCACGGATG-TGTTGGTAGAGGAAATGGAAACGC 1242
Query 740 AGACTGTAGCGGGCGGTTTGGCTACAGGGAAACCATTGGCAAAGGTCTTACCACACATTG 799
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1243 AGACTGAAGCAGGCGGTTTGGCTACAGGGAAACCATTGGCAAAGGTCTTACCACAGATTG 1302
Query 800 AGAAAACAATGAATGTGATTACAGCTGAACCAAGCAAGAACCGGTTCTTACAAATCATCA 859
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 AGAAGACAATGAATGTGATTACAGCTGAACCAAGCAAGAACCGGTTCTTACAAATCATCA 1362
Query 860 GAGATCTGCCTGAA 873
||||||||||||||
Sbjct 1363 GAGATCTGCCTGAA 1376
Score = 521 bits (282), Expect = 8e-147
Identities = 308/321 (96%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 1 ATGAAAGCACATTTCGAGAGTATTCAGATGATTGTAGATTCGACCACACTGCCTCACGCA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 396 ATGAAAGCACATTTCGAGAGTATTCAGATGATTGTGGATTCGACCACACTGCCTCACGCA 455
Query 61 ATTCAGTTTTTGAGTATCCGTATAAGCGAGGAGATCGATGTCTCAGATGTTATGGACAGA 120
|| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 456 ATGCAGTTTTTGAGTATCCGTATCAGCGAGGAGATCGATGTCTCTCATGTTATGGACAGA 515
Query 121 CTGGACAAAGGGAAAGGAATGTTGAGTTCACCTGAGAAGCTTCAGCTCTGGGACGAGCTC 180
||| || |||||||||||||| ||||| |||||||||| |||||||||||||| ||||||
Sbjct 516 CTGAACCAAGGGAAAGGAATGCTGAGTCCACCTGAGAAACTTCAGCTCTGGGATGAGCTC 575
Query 181 AAGATTTTGAGTTTCACGAGGATGGTTTTGTCTCTGTGGTCTGTGACAATGCTTAGCTTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 AAGATTTTGAGTTTCACGAGGATGGTTTTGTCTCTGTGGTCTGTGACAATGCTTAGCTTA 635
Query 241 TACATTAGGGTTCAAGTCAACATTTTAGGCAGACATTTGTATGTTGACACCGCACGAGCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 636 TACATTAGGGTTCAAGTCAACATTTTAGGCAGACATTTGTATGTTGACACCGCTCGAGCT 695
Query 301 CTTGGCAGCTCTCATATACTT 321
||||||||||||||| |||||
Sbjct 696 CTTGGCAGCTCTCATTTACTT 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96284645310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5