BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336990
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61480.1 | Symbols: PXY | Leucine-rich repeat protein kinase... 1099 0.0
> AT5G61480.1 | Symbols: PXY | Leucine-rich repeat protein kinase
family protein | chr5:24724541-24727842 REVERSE LENGTH=3126
Length=3126
Score = 1099 bits (595), Expect = 0.0
Identities = 692/740 (94%), Gaps = 2/740 (0%)
Strand=Plus/Plus
Query 29 GATTCACAGATCAAATTCCGGCAGATTTCGCTACCGCACCTGTTCTTCAGTACTTAAATC 88
||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| ||||
Sbjct 1355 GATTCACCGATCAAATTCCGGCGGATTTCGCCACCGCTCCTGTTCTTCAGTACTTGAATC 1414
Query 89 TCTCTACCAATTCCTTCCACAGCAAATTACCGGCAAACATATGGAAAGCACCGAATCTAC 148
|||| ||||||| ||||||||| ||| |||||| ||||||||||||||| ||||||||||
Sbjct 1415 TCTCAACCAATTTCTTCCACAGGAAACTACCGGAAAACATATGGAAAGCTCCGAATCTAC 1474
Query 149 AGATCTTCTCAGCGAGTTTCAGCAATTTGATCGGTGAAATCCCAAATTACGTTGGTTGCA 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1475 AGATCTTCTCAGCGAGTTTCAGCAATTTGATCGGTGAAATCCCAAATTACGTTGGATGCA 1534
Query 209 AAAGCTTCTACAGTATTGAGCTACAAGGAAACTCACTCAACGGAACGATTCCATGGGACA 268
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 AAAGCTTCTACAGGATTGAACTACAAGGAAACTCACTCAACGGAACGATTCCATGGGACA 1594
Query 269 TCGGACATTGCGAGAAGCTTCTCTGTTTGAATCTCAGTCAAAATCATCTCTCCGGAATCA 328
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1595 TCGGACATTGCGAGAAGCTTCTCTGTTTGAATCTCAGCCAAAATCATCTCAACGGAATCA 1654
Query 329 TTCCATGGGAGATTTCAACGCTTCCGTCAATCGCCGACGTAGATCTTTCTCATAATCTAT 388
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1655 TTCCATGGGAGATTTCAACTCTTCCGTCAATCGCCGACGTAGATCTTTCTCATAATCTCT 1714
Query 389 TAACCGGAACAATCCCTTCCGATTTTGGAAGCCCCAAGACAATCACAACCTTCAACGTTT 448
||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||||||
Sbjct 1715 TAACCGGAACAATCCCTTCCGATTTCGGAAGCTCTAAGACGATCACAACCTTCAACGTTT 1774
Query 449 CGTATAATCAGCTTATCGGTCC-AGTTCCAAGTTGTTCGTTAGCGCATCTGAATCCGTCG 507
||||||||||||| |||||||| | |||||||| |||| || || |||||||||||||||
Sbjct 1775 CGTATAATCAGCTAATCGGTCCGA-TTCCAAGTGGTTCTTTCGCTCATCTGAATCCGTCG 1833
Query 508 TTTTTCGCCTCAAACGAAGGTCTCTGCGGAGATGTCATCGGAAAACCTTGCAATTCTGAT 567
|| ||| ||||||||||||| ||||| |||||| || |||||||||||||||||||||||
Sbjct 1834 TTCTTCTCCTCAAACGAAGGACTCTGTGGAGATCTCGTCGGAAAACCTTGCAATTCTGAT 1893
Query 568 AGGTTTAACACCGGAGATTCAGATCTAGACGGTCATCATAACGAGGAACGACCGAAGAAA 627
||||||||| ||||| || ||||| |||||||||||||||| ||||||||||| ||||||
Sbjct 1894 AGGTTTAACGCCGGAAATGCAGATATAGACGGTCATCATAAAGAGGAACGACCTAAGAAA 1953
Query 628 ACCGCCGGAGCTATTGTTTGGATTTTGGCGGCGGCGATTGGGGTTGGATTCTTCGTCCTT 687
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1954 ACAGCCGGAGCTATTGTTTGGATATTGGCGGCGGCGATTGGGGTTGGATTCTTCGTCCTT 2013
Query 688 GTAGCCGCTACTCGATGTTTCCTGAAAAGCTACGGAAACAGAGTCGACGGTGGTGGAAGA 747
|||||||| ||| |||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 2014 GTAGCCGCCACTAGATGCTTCCAGAAAAGCTACGGAAACAGAGTCGACGGTGGTGGAAGA 2073
Query 748 AACGGCGGAGATATAGGACC 767
||||||||||||||||||||
Sbjct 2074 AACGGCGGAGATATAGGACC 2093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5