BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337011
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48870.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1147 0.0
> AT1G48870.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:18072325-18074457 REVERSE LENGTH=1782
Length=1782
Score = 1147 bits (621), Expect = 0.0
Identities = 833/933 (89%), Gaps = 24/933 (3%)
Strand=Plus/Plus
Query 799 TTGCTTCTTTCAGCTTCTAAAGACAAGACAGCCCGGTTATGGAGAATTGGTTGTGATCAA 858
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 853 TTGCTTCTTTCAGCTTCTAAAGACAAGACAGTTCGGTTATGGAGAACTGGTTGTGATCAA 912
Query 859 TGTCTTCATGTCTTCCATCATAACAACTATGTGACTTGCGTTGAATTCAATCCTGTGAAT 918
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 913 TGTCTTCATGTCTTCCATCATAACAACTACGTGACTTGCGTTGAATTCAATCCTGTAAAT 972
Query 919 AAGAACAACTTCTTAAGTGGATCTATCGATGGAAAAGCTCGAATCTGGGGTTTATCGGAA 978
|||||||||||| |||||| ||||| |||||||||||||||||||||||||| || |||
Sbjct 973 AAGAACAACTTCGCAAGTGGGTCTATAGATGGAAAAGCTCGAATCTGGGGTTTGTCAGAA 1032
Query 979 GAGAGAGTCGTCGCGTGGACCGATGTTCGTGATTCCATTTCTGCAATCTGTTACCAACCA 1038
|| ||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1033 GAAAGAGTTGTCGCTTGGACCGATGTTCGTGATTCCATTTCTGCAATCTCTTACCAACCA 1092
Query 1039 AATGGAAATGGGTTTGTCGTTGGTTGCATCACTGGGAACTGTAGGTTCTATCAAATCTCA 1098
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1093 AACGGAAATGGGTTTGTTGTTGGTTGCATCACTGGGAACTGTAGGTTCTATCAAATCTTA 1152
Query 1099 GGTAACGATGTGATAATGGATGAGCAGATTCTTATCCGGGGACGGAATA-ACATCACCGC 1157
| ||||||||||||||||||||| |||||||||||||||||| |||||| | ||||||||
Sbjct 1153 GATAACGATGTGATAATGGATGAACAGATTCTTATCCGGGGAAGGAATAGA-ATCACCGC 1211
Query 1158 CGTGGAGTTTTGTCCTGGAAGCTCGGAGAAACTTATGGTATCTTCCGACGAGTCGAAAGT 1217
|||||||||||||||||||||||| |||||| || | |||||||| || || ||||||||
Sbjct 1212 CGTGGAGTTTTGTCCTGGAAGCTCCGAGAAAATTTTAGTATCTTCTGAAGATTCGAAAGT 1271
Query 1218 TCGAATATTTAATAAAACACAAATCTTTCACAAATTTAAAGCTCCATCGAAATATGGGAA 1277
|||||||||| | ||||||||||| |||||||||| |||||||||||||| | |||||
Sbjct 1272 TCGAATATTTGACAAAACACAAATGATTCACAAATTCAAAGCTCCATCGAATTTTGGGAG 1331
Query 1278 ACAATCGTCGGCGTCGTTTGTTTCTTCCACCGGAAAACATATTTTATCAGTCCGACGAGG 1337
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1332 ACAATCGTCGGCGTCGTTTGTTTCTTCCACCGGAAAACATATTTTATCAGTTAGACGAGG 1391
Query 1338 TCTCGGAGTTTATCTTTGGAACAACGATG-GTTTTCCGTCGAGGAAAGGCGCGAAATCGT 1396
| ||||||||||||| ||||||||||||| |||| || |||||||||||||| |||||||
Sbjct 1392 TGTCGGAGTTTATCTCTGGAACAACGATGCGTTT-CCTTCGAGGAAAGGCGCAAAATCGT 1450
Query 1397 CGCGTTCTTTCGAGTATTTTCATTCGCCGGGTGTTTCCGCGGCGGCGGCTTGGACTCCAC 1456
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct 1451 CGCGTTCTTTCGAGTATTTTCATTCGCCGGGGGTTTCCGCGGTGGCGGCTTGGACTCAAC 1510
Query 1457 CGGGAGCAAAAGTATCGAAAACGGCCGGAGATGATGAAGAATCACGGCGAGTTCTGAGAC 1516
||| | ||||||| |||||| ||||| |||||||||||||||||||| ||| |||||
Sbjct 1511 CGGAAACAAAAGTGTCGAAAGTAGCCGGTGATGATGAAGAATCACGGCGCGTTATGAGAA 1570
Query 1517 AAATACAGAGCTCCGGGAAATTGTCTCGTTCCTGCCGTGTTACCGCCACGTGGCCGGTGG 1576
||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||||| ||
Sbjct 1571 AAATACAGAGCTCTGGGAGATTGTCTCGCTCCTGTCGTGTTACCGCCACGTGGCCGGAGG 1630
Query 1577 AGAAACTCCTGATGA--GTAGTTC-TGATG-TAGGAA--TT----TA--CGA-TAAT-AC 1622
|||| ||||| |||| |||| | | | ||| || || | ||| | | |
Sbjct 1631 AGAAGCTCCTTATGAATGTAGGAAGTTACGATAGTAACCTTCCCGTCGGCGAGTT-TGAT 1689
Query 1623 CCT-CC----CGTGGAGACTGGTGATCGTGACGGCGAGCTTGGATGGGATGATTAGGACA 1677
| | || |||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1690 CTTGCCGAGGCGTGGAGACTGGTGATCGTGACCGTGAGCTTGGATGGGATGATTAGGACA 1749
Query 1678 TTCCATAACTATGGACTGCCACGTAGATTGTAG 1710
||||||||||||||||||||||||| ||| |||
Sbjct 1750 TTCCATAACTATGGACTGCCACGTACATTTTAG 1782
Score = 998 bits (540), Expect = 0.0
Identities = 734/821 (89%), Gaps = 39/821 (5%)
Strand=Plus/Plus
Query 1 ATGAGTGTTGAAAGAAGTGAA---GTTGTTGATGATGTGTTCTTTGATTCATCTGATGTT 57
|||||||| | |||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 4 ATGAGTGTGGGAAGAAGTGAAGTTGTTGTTGATGATTTGTTCTTTGATTCATCTGATGTT 63
Query 58 TTGTCTATTGGTGAAC-A--AGTA--A-aagaagaag-a--agaagaagCAGAGTTTCAA 108
|||||||||||||||| | |||| | ||||||||| | |||||||||||||||||||
Sbjct 64 TTGTCTATTGGTGAACAAGTAGTAGTAGAAGAAGAAGAAGTAGAAGAAGCAGAGTTTCAA 123
Query 109 ATTTGGTCTGGTGAGCCAGTTAGTGTTGAGGAACGTCGTGTACGGTTTCTCAAGAAAATG 168
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 124 GTTTGGTCTGGTGAGCCAATTAGTGTTGAGGAACGTCGTGTACGGTTTCTCAAGAAAATG 183
Query 169 GGTTTATTAGAAGAGAGATTTGAGTCTATGTATTTGGAGAGGATGATAAGTGATTACAGC 228
|||||||||| | ||||| | | || | ||||||||||| |||| ||||||||
Sbjct 184 GGTTTATTAG-A-AGAGA---G-G----TG--TCTGGAGAGGATGGTAAGCGATTACAGT 231
Query 229 GATGAGGTTACTACTAGTTCTTCTTCAGATTCATATCTCTGTGATAGTGAATTGCAGTGT 288
||||||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 232 GATGAGG-T--TACTAGTTCTTCTTCAGATTCATCTCTCTGTGATAGTGGATTGCAGTGT 288
Query 289 TGTGTTAGAGAGGAGAATTATGGATCAACCACTTCGATGTCTGATGAGGAACTAGAAGGA 348
||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||
Sbjct 289 TGTGTTAGAGAGGAGAACTATGGATCAACTACTTCAATCTCTGATGAGGAACTAGAAGGA 348
Query 349 ---GA-G--GATGATGATGAGTCAGAAGAAAACTCAACCGATGTTTGTTCGAGTCCATCA 402
|| | ||||||||||| |||||||||| ||||| ||| || | ||||||||
Sbjct 349 GTGGATGATGATGATGATGATTCAGAAGAAATCTCAAGTAATGCTTCCACCAGTCCATCG 408
Query 403 CGGAGTTTCAGCAAGAAAAGCGCGAAGAAATGGTTTTTCAATTGC-TTT--GTAGGAGTG 459
||||||| |||||||||||||||||| |||||||| ||||||||| ||| | |||||||
Sbjct 409 CGGAGTTCCAGCAAGAAAAGCGCGAAAAAATGGTTGTTCAATTGCTTTTCAGCAGGAGTG 468
Query 460 AAGGATAAAGATTTCAAATACAAATCAAGTGAAGCGACGATGAGTAAAGTGAAAGTGAAG 519
|||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||
Sbjct 469 AAGGATAAAGATTTCAAATACAAATCAAGTGAAGAGACAATGAGCAAAGTGAAAGTGAAG 528
Query 520 ACTAATAAGAAGAGTCATGTAGAGTTATCTGCAGCTTACATGGTACAAAAGATTAATGGA 579
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 ACTAACAAGAAGAGTCATGTAGAGTTATCTGCAGCTTACATGGTACAAAAGATTAATGGA 588
Query 580 CACAAAGGGAAAATTTGGGTATTGAAGTTTAGTCCTGATGGTAAGTTCTTAGCAACCGGA 639
|||||||||||||||||| ||| |||||||||||||||||||| | |||||||||||||
Sbjct 589 CACAAAGGGAAAATTTGGACATTAAAGTTTAGTCCTGATGGTAAATACTTAGCAACCGGA 648
Query 640 GGTGAAGATGGAGTTGTAAAGATATGGCGAATCACGCTATCGGATTCTTTACTCTCCTCT 699
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 649 GGCGAAGATGGAGTTGTAAAGATATGGCGAATCACGCTATCGGATTCTCTACTCGCCTCT 708
Query 700 TTTATGCGACAACAAGAACCAAATAA-CCAACAAGAAGCATTGGTTATCTTTCCTCAGAA 758
||| | |||||||||||||||| ||| |||||||| |||||||||| | |||||||||||
Sbjct 709 TTTCTTCGACAACAAGAACCAA-TAAACCAACAAGCAGCATTGGTTCTGTTTCCTCAGAA 767
Query 759 AGCTTTTCATATTGAAGAA-CACCGTTTCAAGAACTTTATG 798
|||||||||||| |||||| |||||||||||||||||||||
Sbjct 768 AGCTTTTCATATCGAAGAAACACCGTTTCAAGAACTTTATG 808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84537717780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5