BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg337011 Length=1710 Score E Sequences producing significant alignments: (Bits) Value AT1G48870.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1147 0.0 > AT1G48870.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:18072325-18074457 REVERSE LENGTH=1782 Length=1782 Score = 1147 bits (621), Expect = 0.0 Identities = 833/933 (89%), Gaps = 24/933 (3%) Strand=Plus/Plus Query 799 TTGCTTCTTTCAGCTTCTAAAGACAAGACAGCCCGGTTATGGAGAATTGGTTGTGATCAA 858 ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 853 TTGCTTCTTTCAGCTTCTAAAGACAAGACAGTTCGGTTATGGAGAACTGGTTGTGATCAA 912 Query 859 TGTCTTCATGTCTTCCATCATAACAACTATGTGACTTGCGTTGAATTCAATCCTGTGAAT 918 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 913 TGTCTTCATGTCTTCCATCATAACAACTACGTGACTTGCGTTGAATTCAATCCTGTAAAT 972 Query 919 AAGAACAACTTCTTAAGTGGATCTATCGATGGAAAAGCTCGAATCTGGGGTTTATCGGAA 978 |||||||||||| |||||| ||||| |||||||||||||||||||||||||| || ||| Sbjct 973 AAGAACAACTTCGCAAGTGGGTCTATAGATGGAAAAGCTCGAATCTGGGGTTTGTCAGAA 1032 Query 979 GAGAGAGTCGTCGCGTGGACCGATGTTCGTGATTCCATTTCTGCAATCTGTTACCAACCA 1038 || ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1033 GAAAGAGTTGTCGCTTGGACCGATGTTCGTGATTCCATTTCTGCAATCTCTTACCAACCA 1092 Query 1039 AATGGAAATGGGTTTGTCGTTGGTTGCATCACTGGGAACTGTAGGTTCTATCAAATCTCA 1098 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 1093 AACGGAAATGGGTTTGTTGTTGGTTGCATCACTGGGAACTGTAGGTTCTATCAAATCTTA 1152 Query 1099 GGTAACGATGTGATAATGGATGAGCAGATTCTTATCCGGGGACGGAATA-ACATCACCGC 1157 | ||||||||||||||||||||| |||||||||||||||||| |||||| | |||||||| Sbjct 1153 GATAACGATGTGATAATGGATGAACAGATTCTTATCCGGGGAAGGAATAGA-ATCACCGC 1211 Query 1158 CGTGGAGTTTTGTCCTGGAAGCTCGGAGAAACTTATGGTATCTTCCGACGAGTCGAAAGT 1217 |||||||||||||||||||||||| |||||| || | |||||||| || || |||||||| Sbjct 1212 CGTGGAGTTTTGTCCTGGAAGCTCCGAGAAAATTTTAGTATCTTCTGAAGATTCGAAAGT 1271 Query 1218 TCGAATATTTAATAAAACACAAATCTTTCACAAATTTAAAGCTCCATCGAAATATGGGAA 1277 |||||||||| | ||||||||||| |||||||||| |||||||||||||| | ||||| Sbjct 1272 TCGAATATTTGACAAAACACAAATGATTCACAAATTCAAAGCTCCATCGAATTTTGGGAG 1331 Query 1278 ACAATCGTCGGCGTCGTTTGTTTCTTCCACCGGAAAACATATTTTATCAGTCCGACGAGG 1337 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1332 ACAATCGTCGGCGTCGTTTGTTTCTTCCACCGGAAAACATATTTTATCAGTTAGACGAGG 1391 Query 1338 TCTCGGAGTTTATCTTTGGAACAACGATG-GTTTTCCGTCGAGGAAAGGCGCGAAATCGT 1396 | ||||||||||||| ||||||||||||| |||| || |||||||||||||| ||||||| Sbjct 1392 TGTCGGAGTTTATCTCTGGAACAACGATGCGTTT-CCTTCGAGGAAAGGCGCAAAATCGT 1450 Query 1397 CGCGTTCTTTCGAGTATTTTCATTCGCCGGGTGTTTCCGCGGCGGCGGCTTGGACTCCAC 1456 ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || Sbjct 1451 CGCGTTCTTTCGAGTATTTTCATTCGCCGGGGGTTTCCGCGGTGGCGGCTTGGACTCAAC 1510 Query 1457 CGGGAGCAAAAGTATCGAAAACGGCCGGAGATGATGAAGAATCACGGCGAGTTCTGAGAC 1516 ||| | ||||||| |||||| ||||| |||||||||||||||||||| ||| ||||| Sbjct 1511 CGGAAACAAAAGTGTCGAAAGTAGCCGGTGATGATGAAGAATCACGGCGCGTTATGAGAA 1570 Query 1517 AAATACAGAGCTCCGGGAAATTGTCTCGTTCCTGCCGTGTTACCGCCACGTGGCCGGTGG 1576 ||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||||| || Sbjct 1571 AAATACAGAGCTCTGGGAGATTGTCTCGCTCCTGTCGTGTTACCGCCACGTGGCCGGAGG 1630 Query 1577 AGAAACTCCTGATGA--GTAGTTC-TGATG-TAGGAA--TT----TA--CGA-TAAT-AC 1622 |||| ||||| |||| |||| | | | ||| || || | ||| | | | Sbjct 1631 AGAAGCTCCTTATGAATGTAGGAAGTTACGATAGTAACCTTCCCGTCGGCGAGTT-TGAT 1689 Query 1623 CCT-CC----CGTGGAGACTGGTGATCGTGACGGCGAGCTTGGATGGGATGATTAGGACA 1677 | | || |||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 1690 CTTGCCGAGGCGTGGAGACTGGTGATCGTGACCGTGAGCTTGGATGGGATGATTAGGACA 1749 Query 1678 TTCCATAACTATGGACTGCCACGTAGATTGTAG 1710 ||||||||||||||||||||||||| ||| ||| Sbjct 1750 TTCCATAACTATGGACTGCCACGTACATTTTAG 1782 Score = 998 bits (540), Expect = 0.0 Identities = 734/821 (89%), Gaps = 39/821 (5%) Strand=Plus/Plus Query 1 ATGAGTGTTGAAAGAAGTGAA---GTTGTTGATGATGTGTTCTTTGATTCATCTGATGTT 57 |||||||| | |||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 4 ATGAGTGTGGGAAGAAGTGAAGTTGTTGTTGATGATTTGTTCTTTGATTCATCTGATGTT 63 Query 58 TTGTCTATTGGTGAAC-A--AGTA--A-aagaagaag-a--agaagaagCAGAGTTTCAA 108 |||||||||||||||| | |||| | ||||||||| | ||||||||||||||||||| Sbjct 64 TTGTCTATTGGTGAACAAGTAGTAGTAGAAGAAGAAGAAGTAGAAGAAGCAGAGTTTCAA 123 Query 109 ATTTGGTCTGGTGAGCCAGTTAGTGTTGAGGAACGTCGTGTACGGTTTCTCAAGAAAATG 168 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 124 GTTTGGTCTGGTGAGCCAATTAGTGTTGAGGAACGTCGTGTACGGTTTCTCAAGAAAATG 183 Query 169 GGTTTATTAGAAGAGAGATTTGAGTCTATGTATTTGGAGAGGATGATAAGTGATTACAGC 228 |||||||||| | ||||| | | || | ||||||||||| |||| |||||||| Sbjct 184 GGTTTATTAG-A-AGAGA---G-G----TG--TCTGGAGAGGATGGTAAGCGATTACAGT 231 Query 229 GATGAGGTTACTACTAGTTCTTCTTCAGATTCATATCTCTGTGATAGTGAATTGCAGTGT 288 ||||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 232 GATGAGG-T--TACTAGTTCTTCTTCAGATTCATCTCTCTGTGATAGTGGATTGCAGTGT 288 Query 289 TGTGTTAGAGAGGAGAATTATGGATCAACCACTTCGATGTCTGATGAGGAACTAGAAGGA 348 ||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||| Sbjct 289 TGTGTTAGAGAGGAGAACTATGGATCAACTACTTCAATCTCTGATGAGGAACTAGAAGGA 348 Query 349 ---GA-G--GATGATGATGAGTCAGAAGAAAACTCAACCGATGTTTGTTCGAGTCCATCA 402 || | ||||||||||| |||||||||| ||||| ||| || | |||||||| Sbjct 349 GTGGATGATGATGATGATGATTCAGAAGAAATCTCAAGTAATGCTTCCACCAGTCCATCG 408 Query 403 CGGAGTTTCAGCAAGAAAAGCGCGAAGAAATGGTTTTTCAATTGC-TTT--GTAGGAGTG 459 ||||||| |||||||||||||||||| |||||||| ||||||||| ||| | ||||||| Sbjct 409 CGGAGTTCCAGCAAGAAAAGCGCGAAAAAATGGTTGTTCAATTGCTTTTCAGCAGGAGTG 468 Query 460 AAGGATAAAGATTTCAAATACAAATCAAGTGAAGCGACGATGAGTAAAGTGAAAGTGAAG 519 |||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| Sbjct 469 AAGGATAAAGATTTCAAATACAAATCAAGTGAAGAGACAATGAGCAAAGTGAAAGTGAAG 528 Query 520 ACTAATAAGAAGAGTCATGTAGAGTTATCTGCAGCTTACATGGTACAAAAGATTAATGGA 579 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 529 ACTAACAAGAAGAGTCATGTAGAGTTATCTGCAGCTTACATGGTACAAAAGATTAATGGA 588 Query 580 CACAAAGGGAAAATTTGGGTATTGAAGTTTAGTCCTGATGGTAAGTTCTTAGCAACCGGA 639 |||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||||| Sbjct 589 CACAAAGGGAAAATTTGGACATTAAAGTTTAGTCCTGATGGTAAATACTTAGCAACCGGA 648 Query 640 GGTGAAGATGGAGTTGTAAAGATATGGCGAATCACGCTATCGGATTCTTTACTCTCCTCT 699 || ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 649 GGCGAAGATGGAGTTGTAAAGATATGGCGAATCACGCTATCGGATTCTCTACTCGCCTCT 708 Query 700 TTTATGCGACAACAAGAACCAAATAA-CCAACAAGAAGCATTGGTTATCTTTCCTCAGAA 758 ||| | |||||||||||||||| ||| |||||||| |||||||||| | ||||||||||| Sbjct 709 TTTCTTCGACAACAAGAACCAA-TAAACCAACAAGCAGCATTGGTTCTGTTTCCTCAGAA 767 Query 759 AGCTTTTCATATTGAAGAA-CACCGTTTCAAGAACTTTATG 798 |||||||||||| |||||| ||||||||||||||||||||| Sbjct 768 AGCTTTTCATATCGAAGAAACACCGTTTCAAGAACTTTATG 808 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84537717780 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5