BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337030
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49030.1 | Symbols: | PLAC8 family protein | chr1:18136705-... 590 7e-168
> AT1G49030.1 | Symbols: | PLAC8 family protein | chr1:18136705-18137946
FORWARD LENGTH=864
Length=864
Score = 590 bits (319), Expect = 7e-168
Identities = 505/591 (85%), Gaps = 27/591 (5%)
Strand=Plus/Plus
Query 85 CAAGCCGAGCAGAAACATCCCAACAATGGTGGAAG-GGTTGACCAACCAAGTGGAGTACC 143
||||| ||||||| | |||||||||| ||||| || |||| ||||||||| ||||||
Sbjct 192 CAAGCTGAGCAGATATATCCCAACAACGGTGG-AGTGGTTAACCAACCAAACCAAGTACC 250
Query 144 TATGGGCAGACC-GGGCCAACCTACAAATATCAA-CACCGGTGGAATGGGTAGCCAACCT 201
|| | ||||| || || |||||| ||||||| || ||| || || ||||||
Sbjct 251 GAT--G-AGACCTGGTCC-ACCTACGTATATCAATCA-AAGTGCAACATTTAACCAACCA 305
Query 202 TATGGAGTA-CAAATGGTCC-GTCCACCACCAGTTATTAACCAACCATCGAACTGGACTT 259
||||||||| | ||||| || | || ||| || | || ||||||||||||||||
Sbjct 306 TATGGAGTATC-AATGG-CCGGACC-GGTCCA--TA--CA-CAGCCATCGAACTGGACTT 357
Query 260 CAGGGCTTTTTGATTGCATGCATGATGGTGAAAATGCTATCATCACATTTTGCTTCCCGT 319
|||| || |||||||||||| | || || ||||||||| ||||||||| || || || |
Sbjct 358 CAGGTCTATTTGATTGCATGAACGACGGCGAAAATGCTCTCATCACATGCTGTTTTCCAT 417
Query 320 TCGTCACGTTCGGACAGATCGCAGAGGTTGTCGACGAAGGCGC-AACATCTTGTGGGACG 378
||||||||||||||||||||||||||||| |||| ||||| || | || ||||||||||
Sbjct 418 TCGTCACGTTCGGACAGATCGCAGAGGTTATCGATGAAGGAGCGACCA-GTTGTGGGACG 476
Query 379 AG-TGGAATGTTGTATGGATTGATATGTTGTCTGTTTGGGATACCATGTATATACT-CAT 436
| ||||||||||||||| |||||||||||| |||||| |||||| ||| | || | |||
Sbjct 477 -GCTGGAATGTTGTATGGGTTGATATGTTGTTTGTTTGCGATACCGTGTGTGTA-TACAT 534
Query 437 GCACATTCC-GAGCCAAACTCCGAAATAAGTACGGGTTACCGGATGCTCCAGCTCCAGAT 495
||||||||| || |||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 535 GCACATTCCGGA-CCAAGCTCCGAAGCAAGTACGGGTTACCGGATGCTCCAGCTCCAGAT 593
Query 496 TGGATCACTCATTGCTTCTGTGAATACTGTGCTCTTTGCCAAGAATATCGTGAACTCAAA 555
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 594 TGGATCACTCATTGCTTCTGTGAATATTGTGCTCTTTGCCAAGAATATCGTGAACTCAAG 653
Query 556 AATCGTGGCCTTGACCCTTCCATTGGCTGGATTGGGAATGTGCAAAAGCAGCGAATGGGT 615
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 654 AATCGTGGCCTTGACCCTTCCATTGGATGGATTGGGAACGTGCAAAAGCAGCGAATGGGT 713
Query 616 CAGCCACAAGAGATGATGGCTCCTCCAATGGGTCAACGAATGATGGGTTGA 666
|||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 CAGCAACAAGAGATGATGGCTCCTCCAATGGGTCAACGAATGATGGGTTGA 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5