BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg337039

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05450.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Cystatin-...   254    6e-67


> AT3G05450.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Cystatin-related, 
plant (InterPro:IPR006525); BEST Arabidopsis thaliana 
protein match is: Cystatin/monellin superfamily protein 
(TAIR:AT3G05685.1); Has 2098 Blast hits to 1525 proteins in 
202 species: Archae - 2; Bacteria - 561; Metazoa - 485; Fungi 
- 302; Plants - 191; Viruses - 20; Other Eukaryotes - 537 
(source: NCBI BLink). | chr3:1573909-1576418 REVERSE LENGTH=1323
Length=1323

 Score =  254 bits (137),  Expect = 6e-67
 Identities = 270/328 (82%), Gaps = 34/328 (10%)
 Strand=Plus/Plus

Query  13   TCAAGCGACGGCGAGGCCAAG-GATGGATCTTCAAGCGAAACCCAATCGACAGAGTAC-A  70
            |||||||||||||||  |||| | ||||||||||||||||| |||||| || |||| | |
Sbjct  670  TCAAGCGACGGCGAGATCAAGTG-TGGATCTTCAAGCGAAAACCAATCAACGGAGT-CAA  727

Query  71   TGGAAATTTCCACGGGCGATGAATCTTCTATGCTGGGGAAGCGCAAGGTTGAAACCCCC-  129
            |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || 
Sbjct  728  TGGAAATTACCACGGGAGATGAATCTTCTATGCTGGGGAAGCGCAAGGTTGAAACCACCG  787

Query  130  ATCCTGGAGGATCTC-AGTGAAAACGA--AGGCG-A-C---AT-A----GA--AGGTG--  172
            | ||||||||||| | | |||||| ||  ||| | | |   || |    ||  ||| |  
Sbjct  788  A-CCTGGAGGATCCCGA-TGAAAATGACGAGGAGGATCCCGATGAAAACGACGAGGAGGA  845

Query  173  TCG--AC-GATGATAGTGATTCCGAATGGGATAAGGATAGCTTCGATGGTCTG-GAATAT  228
            | |  |  | ||||||||||||||||||||||||||||||||||||||| | | || |||
Sbjct  846  TAGTGAAAG-TGATAGTGATTCCGAATGGGATAAGGATAGCTTCGATGGCC-GAGAGTAT  903

Query  229  CATTCCTGGGATGATCAGA-AGGAGTATATCGACAAAT-ATTTTGAGAAGAGGGCCCGTT  286
            |||||||  |||||||||| || |||||  | || ||  |  ||||||||||||||||||
Sbjct  904  CATTCCTCTGATGATCAGAGAG-AGTATGCC-ACCAAGGACCTTGAGAAGAGGGCCCGTT  961

Query  287  TTTACAAGCGCACGGTCATCGAAACCAA  314
            ||||||||||||||||||||||||||||
Sbjct  962  TTTACAAGCGCACGGTCATCGAAACCAA  989



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18096389640


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5